HEADER VIRAL PROTEIN/INHIBITOR 21-FEB-24 8YDS TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 DELTA TITLE 2 VARIANT SPIKE PROTEIN IN COMPLEX WITH CE59 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 INHIBITING PEPTIDE CE59; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 7 2; SOURCE 8 ORGANISM_TAXID: 2697049; SOURCE 9 GENE: S, 2; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: EXPI293F KEYWDS RBD, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKAMURA,N.NUMOTO,Y.FUJIYOSHI REVDAT 2 30-JUL-25 8YDS 1 JRNL REVDAT 1 15-JAN-25 8YDS 0 JRNL AUTH S.NAKAMURA,Y.TANIMURA,R.NOMURA,H.SUZUKI,K.NISHIKAWA, JRNL AUTH 2 A.KAMEGAWA,N.NUMOTO,A.TANAKA,S.KAWABATA,S.SAKAGUCHI,A.EMI, JRNL AUTH 3 Y.SUZUKI,Y.FUJIYOSHI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF A MUTATION-TOLERANT JRNL TITL 2 INHIBITOR PEPTIDE AGAINST VARIABLE SARS-COV-2 SPIKES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 65122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39854234 JRNL DOI 10.1073/PNAS.2413465122 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6800 - 3.9500 1.00 2886 155 0.1641 0.1927 REMARK 3 2 3.9500 - 3.1400 1.00 2742 146 0.1701 0.2257 REMARK 3 3 3.1400 - 2.7400 1.00 2738 140 0.1866 0.2127 REMARK 3 4 2.7400 - 2.4900 1.00 2721 142 0.2005 0.2486 REMARK 3 5 2.4900 - 2.3100 1.00 2697 141 0.2000 0.2415 REMARK 3 6 2.3100 - 2.1800 1.00 2678 142 0.2061 0.2382 REMARK 3 7 2.1700 - 2.0700 1.00 2680 146 0.2062 0.2771 REMARK 3 8 2.0700 - 1.9800 1.00 2702 142 0.2004 0.2804 REMARK 3 9 1.9800 - 1.9000 1.00 2637 137 0.2234 0.2606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.926 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1994 REMARK 3 ANGLE : 0.737 2697 REMARK 3 CHIRALITY : 0.051 284 REMARK 3 PLANARITY : 0.007 350 REMARK 3 DIHEDRAL : 12.619 727 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE (PH 9.0), 20% PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.33333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.33333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 103 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 531 REMARK 465 LEU B 532 REMARK 465 TYR B 533 REMARK 465 PHE B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 SER B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 GLY B 548 REMARK 465 LEU B 549 REMARK 465 ASN B 550 REMARK 465 ASP B 551 REMARK 465 ILE B 552 REMARK 465 PHE B 553 REMARK 465 GLU B 554 REMARK 465 ALA B 555 REMARK 465 GLN B 556 REMARK 465 LYS B 557 REMARK 465 ILE B 558 REMARK 465 GLU B 559 REMARK 465 TRP B 560 REMARK 465 HIS B 561 REMARK 465 GLU B 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 352 53.22 -116.60 REMARK 500 PHE B 377 80.62 -156.40 REMARK 500 ASN B 422 -53.46 -129.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YDS A 1 39 PDB 8YDS 8YDS 1 39 DBREF 8YDS B 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 SEQADV 8YDS ARG B 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8YDS LYS B 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8YDS SER B 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ASN B 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS SER B 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLU B 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ASN B 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS LEU B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS TYR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS PHE B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLN B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLY B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS SER B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLY B 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS LEU B 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ASN B 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ASP B 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ILE B 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS PHE B 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLU B 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ALA B 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLN B 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS LYS B 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS ILE B 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLU B 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS TRP B 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS HIS B 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDS GLU B 562 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 39 ASP LYS GLU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 A 39 ARG ARG LEU ASP GLU GLU GLY HIS GLY GLU ALA SER LEU SEQRES 3 A 39 ARG VAL SER ASP LEU ILE TYR GLU PHE MET LYS ARG ASP SEQRES 1 B 230 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 230 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 230 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 230 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 230 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 230 ASN TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 230 GLY SER LYS PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 230 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 B 230 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 B 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 B 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 B 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU HET NAG C 1 14 HET NAG C 2 14 HET GOL B 601 6 HET GOL B 602 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *281(H2 O) HELIX 1 AA1 LYS A 2 GLU A 19 1 18 HELIX 2 AA2 HIS A 21 ARG A 38 1 18 HELIX 3 AA3 PRO B 337 ASN B 343 1 7 HELIX 4 AA4 SER B 349 TRP B 353 5 5 HELIX 5 AA5 ASP B 364 ASN B 370 1 7 HELIX 6 AA6 SER B 383 ASN B 388 1 6 HELIX 7 AA7 ASP B 405 ILE B 410 5 6 HELIX 8 AA8 GLY B 416 ASN B 422 1 7 HELIX 9 AA9 SER B 438 SER B 443 1 6 HELIX 10 AB1 GLY B 502 TYR B 505 5 4 SHEET 1 AA1 5 ASN B 354 ILE B 358 0 SHEET 2 AA1 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA1 5 PRO B 507 GLU B 516 -1 O TYR B 508 N ILE B 402 SHEET 4 AA1 5 CYS B 432 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA1 5 THR B 376 CYS B 379 -1 N LYS B 378 O VAL B 433 SHEET 1 AA2 3 CYS B 361 ALA B 363 0 SHEET 2 AA2 3 VAL B 524 GLY B 526 1 O CYS B 525 N ALA B 363 SHEET 3 AA2 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA3 2 ARG B 452 ARG B 454 0 SHEET 2 AA3 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA4 2 TYR B 473 GLN B 474 0 SHEET 2 AA4 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 2 CYS B 379 CYS B 432 1555 1555 2.07 SSBOND 3 CYS B 391 CYS B 525 1555 1555 2.05 SSBOND 4 CYS B 480 CYS B 488 1555 1555 2.07 LINK ND2 ASN B 343 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 74.050 74.050 101.000 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013504 0.007797 0.000000 0.00000 SCALE2 0.000000 0.015594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009901 0.00000 CONECT 368 575 CONECT 425 1911 CONECT 575 368 CONECT 715 1128 CONECT 805 1876 CONECT 1128 715 CONECT 1524 1581 CONECT 1581 1524 CONECT 1876 805 CONECT 1911 425 1912 1922 CONECT 1912 1911 1913 1919 CONECT 1913 1912 1914 1920 CONECT 1914 1913 1915 1921 CONECT 1915 1914 1916 1922 CONECT 1916 1915 1923 CONECT 1917 1918 1919 1924 CONECT 1918 1917 CONECT 1919 1912 1917 CONECT 1920 1913 CONECT 1921 1914 1925 CONECT 1922 1911 1915 CONECT 1923 1916 CONECT 1924 1917 CONECT 1925 1921 1926 1936 CONECT 1926 1925 1927 1933 CONECT 1927 1926 1928 1934 CONECT 1928 1927 1929 1935 CONECT 1929 1928 1930 1936 CONECT 1930 1929 1937 CONECT 1931 1932 1933 1938 CONECT 1932 1931 CONECT 1933 1926 1931 CONECT 1934 1927 CONECT 1935 1928 CONECT 1936 1925 1929 CONECT 1937 1930 CONECT 1938 1931 CONECT 1939 1940 1941 CONECT 1940 1939 CONECT 1941 1939 1942 1943 CONECT 1942 1941 CONECT 1943 1941 1944 CONECT 1944 1943 CONECT 1945 1946 1947 CONECT 1946 1945 CONECT 1947 1945 1948 1949 CONECT 1948 1947 CONECT 1949 1947 1950 CONECT 1950 1949 MASTER 275 0 4 10 12 0 0 6 2229 2 49 21 END