HEADER VIRAL PROTEIN/INHIBITOR 21-FEB-24 8YDT TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 ALPHA TITLE 2 VARIANT SPIKE PROTEIN IN COMPLEX WITH CE41 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 INHIBITING PEPTIDE CE41; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 7 2; SOURCE 8 ORGANISM_TAXID: 2697049; SOURCE 9 GENE: S, 2; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS RBD, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKAMURA,N.NUMOTO,Y.FUJIYOSHI REVDAT 2 30-JUL-25 8YDT 1 JRNL REVDAT 1 15-JAN-25 8YDT 0 JRNL AUTH S.NAKAMURA,Y.TANIMURA,R.NOMURA,H.SUZUKI,K.NISHIKAWA, JRNL AUTH 2 A.KAMEGAWA,N.NUMOTO,A.TANAKA,S.KAWABATA,S.SAKAGUCHI,A.EMI, JRNL AUTH 3 Y.SUZUKI,Y.FUJIYOSHI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF A MUTATION-TOLERANT JRNL TITL 2 INHIBITOR PEPTIDE AGAINST VARIABLE SARS-COV-2 SPIKES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 65122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39854234 JRNL DOI 10.1073/PNAS.2413465122 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2300 - 4.7900 0.99 2787 154 0.1837 0.2273 REMARK 3 2 4.7800 - 3.8000 1.00 2829 149 0.2152 0.2230 REMARK 3 3 3.8000 - 3.3200 0.99 2775 148 0.2659 0.2900 REMARK 3 4 3.3200 - 3.0100 1.00 2822 145 0.2945 0.4052 REMARK 3 5 3.0100 - 2.8000 1.00 2802 144 0.2989 0.3759 REMARK 3 6 2.8000 - 2.6300 1.00 2810 151 0.3306 0.4066 REMARK 3 7 2.6300 - 2.5000 0.99 2804 149 0.3561 0.3887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.426 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3904 REMARK 3 ANGLE : 1.011 5292 REMARK 3 CHIRALITY : 0.056 556 REMARK 3 PLANARITY : 0.006 688 REMARK 3 DIHEDRAL : 14.803 1410 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 13.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE DIHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.26633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.53267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 333 REMARK 465 GLU B 530 REMARK 465 ASN B 531 REMARK 465 LEU B 532 REMARK 465 TYR B 533 REMARK 465 PHE B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 SER B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 GLY B 548 REMARK 465 LEU B 549 REMARK 465 ASN B 550 REMARK 465 ASP B 551 REMARK 465 ILE B 552 REMARK 465 PHE B 553 REMARK 465 GLU B 554 REMARK 465 ALA B 555 REMARK 465 GLN B 556 REMARK 465 LYS B 557 REMARK 465 ILE B 558 REMARK 465 GLU B 559 REMARK 465 TRP B 560 REMARK 465 HIS B 561 REMARK 465 GLU B 562 REMARK 465 THR D 333 REMARK 465 GLU D 530 REMARK 465 ASN D 531 REMARK 465 LEU D 532 REMARK 465 TYR D 533 REMARK 465 PHE D 534 REMARK 465 GLN D 535 REMARK 465 GLY D 536 REMARK 465 SER D 537 REMARK 465 HIS D 538 REMARK 465 HIS D 539 REMARK 465 HIS D 540 REMARK 465 HIS D 541 REMARK 465 HIS D 542 REMARK 465 HIS D 543 REMARK 465 HIS D 544 REMARK 465 HIS D 545 REMARK 465 HIS D 546 REMARK 465 HIS D 547 REMARK 465 GLY D 548 REMARK 465 LEU D 549 REMARK 465 ASN D 550 REMARK 465 ASP D 551 REMARK 465 ILE D 552 REMARK 465 PHE D 553 REMARK 465 GLU D 554 REMARK 465 ALA D 555 REMARK 465 GLN D 556 REMARK 465 LYS D 557 REMARK 465 ILE D 558 REMARK 465 GLU D 559 REMARK 465 TRP D 560 REMARK 465 HIS D 561 REMARK 465 GLU D 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 109.08 -55.64 REMARK 500 TRP B 353 156.18 -47.16 REMARK 500 ASP B 364 98.49 -68.14 REMARK 500 PHE B 377 51.79 -154.06 REMARK 500 PRO B 384 4.27 -66.24 REMARK 500 PHE B 400 174.05 175.88 REMARK 500 PRO B 412 151.72 -41.88 REMARK 500 ASP B 428 43.97 -76.69 REMARK 500 ASN B 481 18.66 51.84 REMARK 500 HIS B 519 88.39 -69.71 REMARK 500 ALA B 522 100.19 80.00 REMARK 500 HIS C 21 55.75 -96.13 REMARK 500 MET C 36 10.07 -67.64 REMARK 500 ALA D 352 51.97 -107.01 REMARK 500 ASN D 360 71.78 61.01 REMARK 500 ALA D 372 -148.72 -164.99 REMARK 500 PHE D 377 49.77 -144.93 REMARK 500 ASN D 388 3.81 -69.93 REMARK 500 ALA D 411 146.41 -173.54 REMARK 500 ASN D 422 -53.70 -124.21 REMARK 500 ASP D 428 33.09 -87.40 REMARK 500 THR D 470 43.35 -103.32 REMARK 500 PRO D 499 28.10 -73.24 REMARK 500 LEU D 517 48.89 -101.46 REMARK 500 HIS D 519 87.92 -69.21 REMARK 500 ALA D 522 115.27 74.81 REMARK 500 SER D 527 44.02 -70.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YDT A 1 39 PDB 8YDT 8YDT 1 39 DBREF 8YDT B 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 DBREF 8YDT C 1 39 PDB 8YDT 8YDT 1 39 DBREF 8YDT D 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 SEQADV 8YDT TYR B 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8YDT SER B 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASN B 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT SER B 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU B 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASN B 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT LEU B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT TYR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT PHE B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLN B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLY B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT SER B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLY B 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT LEU B 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASN B 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASP B 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ILE B 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT PHE B 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU B 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ALA B 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLN B 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT LYS B 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ILE B 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU B 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT TRP B 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS B 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU B 562 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT TYR D 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8YDT SER D 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASN D 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT SER D 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU D 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASN D 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT LEU D 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT TYR D 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT PHE D 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLN D 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLY D 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT SER D 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLY D 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT LEU D 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASN D 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ASP D 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ILE D 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT PHE D 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU D 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ALA D 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLN D 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT LYS D 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT ILE D 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU D 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT TRP D 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT HIS D 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDT GLU D 562 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 39 ASP LYS GLU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 A 39 ARG ARG LEU ASP GLU GLU GLY HIS GLY GLU ALA SER LEU SEQRES 3 A 39 ARG VAL SER ASP LEU ILE TYR GLU PHE MET LYS LYS ASP SEQRES 1 B 230 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 230 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 230 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 230 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 230 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 230 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 230 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 230 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR TYR SEQRES 14 B 230 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 B 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 B 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 B 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU SEQRES 1 C 39 ASP LYS GLU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 C 39 ARG ARG LEU ASP GLU GLU GLY HIS GLY GLU ALA SER LEU SEQRES 3 C 39 ARG VAL SER ASP LEU ILE TYR GLU PHE MET LYS LYS ASP SEQRES 1 D 230 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 D 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 D 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 D 230 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 D 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 D 230 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 D 230 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 D 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 D 230 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 D 230 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 D 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 D 230 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 D 230 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR TYR SEQRES 14 D 230 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 D 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 D 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 D 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 D 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU HET NAG B 601 14 HET NAG D 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 2(C8 H15 N O6) HELIX 1 AA1 LYS A 2 GLU A 19 1 18 HELIX 2 AA2 HIS A 21 LYS A 38 1 18 HELIX 3 AA3 PHE B 338 ASN B 343 1 6 HELIX 4 AA4 SER B 349 TRP B 353 5 5 HELIX 5 AA5 ASP B 364 ALA B 372 1 9 HELIX 6 AA6 ASP B 405 ILE B 410 5 6 HELIX 7 AA7 GLY B 416 ASN B 422 1 7 HELIX 8 AA8 SER B 438 SER B 443 1 6 HELIX 9 AA9 GLY B 502 TYR B 505 5 4 HELIX 10 AB1 LYS C 2 GLY C 20 1 19 HELIX 11 AB2 HIS C 21 MET C 36 1 16 HELIX 12 AB3 PRO D 337 ASN D 343 1 7 HELIX 13 AB4 ASP D 364 ASN D 370 1 7 HELIX 14 AB5 SER D 383 ASN D 388 1 6 HELIX 15 AB6 GLY D 404 ARG D 408 1 5 HELIX 16 AB7 GLY D 416 ASN D 422 1 7 HELIX 17 AB8 SER D 438 SER D 443 1 6 HELIX 18 AB9 GLY D 502 TYR D 505 5 4 SHEET 1 AA1 5 ASN B 354 ILE B 358 0 SHEET 2 AA1 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA1 5 PRO B 507 GLU B 516 -1 O TYR B 508 N ILE B 402 SHEET 4 AA1 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA1 5 THR B 376 TYR B 380 -1 N LYS B 378 O VAL B 433 SHEET 1 AA2 3 CYS B 361 ALA B 363 0 SHEET 2 AA2 3 VAL B 524 GLY B 526 1 O CYS B 525 N ALA B 363 SHEET 3 AA2 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA3 2 LEU B 452 ARG B 454 0 SHEET 2 AA3 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA4 2 TYR B 473 GLN B 474 0 SHEET 2 AA4 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA5 5 ASN D 354 ILE D 358 0 SHEET 2 AA5 5 ASN D 394 ARG D 403 -1 O VAL D 395 N ILE D 358 SHEET 3 AA5 5 PRO D 507 GLU D 516 -1 O VAL D 512 N ASP D 398 SHEET 4 AA5 5 GLY D 431 ASN D 437 -1 N ILE D 434 O VAL D 511 SHEET 5 AA5 5 THR D 376 TYR D 380 -1 N TYR D 380 O GLY D 431 SHEET 1 AA6 3 CYS D 361 ALA D 363 0 SHEET 2 AA6 3 VAL D 524 GLY D 526 1 O CYS D 525 N ALA D 363 SHEET 3 AA6 3 CYS D 391 PHE D 392 -1 N PHE D 392 O VAL D 524 SHEET 1 AA7 2 LEU D 452 ARG D 454 0 SHEET 2 AA7 2 LEU D 492 SER D 494 -1 O GLN D 493 N TYR D 453 SHEET 1 AA8 2 TYR D 473 GLN D 474 0 SHEET 2 AA8 2 CYS D 488 TYR D 489 -1 O TYR D 489 N TYR D 473 SSBOND 1 CYS B 336 CYS B 361 1555 1555 2.04 SSBOND 2 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 3 CYS B 391 CYS B 525 1555 1555 2.04 SSBOND 4 CYS B 480 CYS B 488 1555 1555 2.04 SSBOND 5 CYS D 336 CYS D 361 1555 1555 2.03 SSBOND 6 CYS D 379 CYS D 432 1555 1555 2.04 SSBOND 7 CYS D 391 CYS D 525 1555 1555 2.01 SSBOND 8 CYS D 480 CYS D 488 1555 1555 2.03 LINK ND2 ASN B 343 C1 NAG B 601 1555 1555 1.46 LINK ND2 ASN D 343 C1 NAG D 601 1555 1555 1.45 CRYST1 73.307 73.307 99.799 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013641 0.007876 0.000000 0.00000 SCALE2 0.000000 0.015752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010020 0.00000 CONECT 359 566 CONECT 416 3783 CONECT 566 359 CONECT 706 1119 CONECT 796 1866 CONECT 1119 706 CONECT 1510 1567 CONECT 1567 1510 CONECT 1866 796 CONECT 2250 2457 CONECT 2307 3797 CONECT 2457 2250 CONECT 2597 3010 CONECT 2687 3757 CONECT 3010 2597 CONECT 3401 3458 CONECT 3458 3401 CONECT 3757 2687 CONECT 3783 416 3784 3794 CONECT 3784 3783 3785 3791 CONECT 3785 3784 3786 3792 CONECT 3786 3785 3787 3793 CONECT 3787 3786 3788 3794 CONECT 3788 3787 3795 CONECT 3789 3790 3791 3796 CONECT 3790 3789 CONECT 3791 3784 3789 CONECT 3792 3785 CONECT 3793 3786 CONECT 3794 3783 3787 CONECT 3795 3788 CONECT 3796 3789 CONECT 3797 2307 3798 3808 CONECT 3798 3797 3799 3805 CONECT 3799 3798 3800 3806 CONECT 3800 3799 3801 3807 CONECT 3801 3800 3802 3808 CONECT 3802 3801 3809 CONECT 3803 3804 3805 3810 CONECT 3804 3803 CONECT 3805 3798 3803 CONECT 3806 3799 CONECT 3807 3800 CONECT 3808 3797 3801 CONECT 3809 3802 CONECT 3810 3803 MASTER 325 0 2 18 24 0 0 6 3806 4 46 42 END