HEADER VIRAL PROTEIN/INHIBITOR 21-FEB-24 8YDV TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 OMICRON TITLE 2 BA.5 VARIANT SPIKE PROTEIN IN COMPLEX WITH CESPIACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 INHIBITING PEPTIDE CESPIACE; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 7 2; SOURCE 8 ORGANISM_TAXID: 2697049; SOURCE 9 GENE: S, 2; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: EXPI293F KEYWDS RBD, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKAMURA,N.NUMOTO,Y.FUJIYOSHI REVDAT 2 30-JUL-25 8YDV 1 JRNL REVDAT 1 15-JAN-25 8YDV 0 JRNL AUTH S.NAKAMURA,Y.TANIMURA,R.NOMURA,H.SUZUKI,K.NISHIKAWA, JRNL AUTH 2 A.KAMEGAWA,N.NUMOTO,A.TANAKA,S.KAWABATA,S.SAKAGUCHI,A.EMI, JRNL AUTH 3 Y.SUZUKI,Y.FUJIYOSHI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF A MUTATION-TOLERANT JRNL TITL 2 INHIBITOR PEPTIDE AGAINST VARIABLE SARS-COV-2 SPIKES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 65122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39854234 JRNL DOI 10.1073/PNAS.2413465122 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9800 - 5.5400 1.00 2723 147 0.1775 0.1928 REMARK 3 2 5.5400 - 4.4000 1.00 2692 140 0.1529 0.1750 REMARK 3 3 4.4000 - 3.8400 1.00 2695 140 0.1555 0.1734 REMARK 3 4 3.8400 - 3.4900 1.00 2670 136 0.1728 0.1810 REMARK 3 5 3.4900 - 3.2400 1.00 2696 138 0.1888 0.1801 REMARK 3 6 3.2400 - 3.0500 1.00 2683 142 0.1966 0.2158 REMARK 3 7 3.0500 - 2.9000 1.00 2663 143 0.2044 0.2547 REMARK 3 8 2.9000 - 2.7700 1.00 2688 140 0.2239 0.2792 REMARK 3 9 2.7700 - 2.6700 1.00 2659 141 0.2474 0.3053 REMARK 3 10 2.6700 - 2.5700 1.00 2644 142 0.2318 0.2819 REMARK 3 11 2.5700 - 2.4900 1.00 2692 140 0.2524 0.3361 REMARK 3 12 2.4900 - 2.4200 1.00 2667 140 0.2624 0.3340 REMARK 3 13 2.4200 - 2.3600 1.00 2655 139 0.2704 0.3007 REMARK 3 14 2.3600 - 2.3000 1.00 2659 141 0.2823 0.3378 REMARK 3 15 2.3000 - 2.2500 1.00 2663 142 0.3090 0.4019 REMARK 3 16 2.2500 - 2.2000 1.00 2669 143 0.3283 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.345 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3876 REMARK 3 ANGLE : 0.510 5241 REMARK 3 CHIRALITY : 0.044 546 REMARK 3 PLANARITY : 0.004 680 REMARK 3 DIHEDRAL : 10.526 1394 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 10% PEG 6000, 5% REMARK 280 MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.11500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.55750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.67250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 333 REMARK 465 ALA B 372 REMARK 465 PRO B 373 REMARK 465 GLU B 530 REMARK 465 ASN B 531 REMARK 465 LEU B 532 REMARK 465 TYR B 533 REMARK 465 PHE B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 SER B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 GLY B 548 REMARK 465 LEU B 549 REMARK 465 ASN B 550 REMARK 465 ASP B 551 REMARK 465 ILE B 552 REMARK 465 PHE B 553 REMARK 465 GLU B 554 REMARK 465 ALA B 555 REMARK 465 GLN B 556 REMARK 465 LYS B 557 REMARK 465 ILE B 558 REMARK 465 GLU B 559 REMARK 465 TRP B 560 REMARK 465 HIS B 561 REMARK 465 GLU B 562 REMARK 465 ASN D 531 REMARK 465 LEU D 532 REMARK 465 TYR D 533 REMARK 465 PHE D 534 REMARK 465 GLN D 535 REMARK 465 GLY D 536 REMARK 465 SER D 537 REMARK 465 HIS D 538 REMARK 465 HIS D 539 REMARK 465 HIS D 540 REMARK 465 HIS D 541 REMARK 465 HIS D 542 REMARK 465 HIS D 543 REMARK 465 HIS D 544 REMARK 465 HIS D 545 REMARK 465 HIS D 546 REMARK 465 HIS D 547 REMARK 465 GLY D 548 REMARK 465 LEU D 549 REMARK 465 ASN D 550 REMARK 465 ASP D 551 REMARK 465 ILE D 552 REMARK 465 PHE D 553 REMARK 465 GLU D 554 REMARK 465 ALA D 555 REMARK 465 GLN D 556 REMARK 465 LYS D 557 REMARK 465 ILE D 558 REMARK 465 GLU D 559 REMARK 465 TRP D 560 REMARK 465 HIS D 561 REMARK 465 GLU D 562 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 335 CG CD1 CD2 REMARK 470 SER B 366 OG REMARK 470 VAL B 367 CG1 CG2 REMARK 470 LEU B 368 CG CD1 CD2 REMARK 470 TYR B 369 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 370 CG OD1 ND2 REMARK 470 PHE B 371 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 374 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 519 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 527 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 422 -62.16 -125.93 REMARK 500 ASN B 528 33.94 -93.30 REMARK 500 HIS C 21 63.84 -118.87 REMARK 500 ASN D 422 -60.75 -131.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YDV A 1 39 PDB 8YDV 8YDV 1 39 DBREF 8YDV B 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 DBREF 8YDV C 1 39 PDB 8YDV 8YDV 1 39 DBREF 8YDV D 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 SEQADV 8YDV ASP B 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8YDV PHE B 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8YDV PRO B 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8YDV ALA B 376 UNP P0DTC2 THR 376 VARIANT SEQADV 8YDV ASN B 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 8YDV SER B 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 8YDV ASN B 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8YDV LYS B 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8YDV ARG B 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8YDV ASN B 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8YDV LYS B 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8YDV ALA B 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8YDV VAL B 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 8YDV ARG B 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8YDV TYR B 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8YDV HIS B 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8YDV SER B 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASN B 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV SER B 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU B 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASN B 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV LEU B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV TYR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV PHE B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLN B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLY B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV SER B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLY B 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV LEU B 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASN B 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASP B 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ILE B 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV PHE B 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU B 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ALA B 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLN B 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV LYS B 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ILE B 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU B 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV TRP B 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS B 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU B 562 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASP D 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8YDV PHE D 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8YDV PRO D 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8YDV ALA D 376 UNP P0DTC2 THR 376 VARIANT SEQADV 8YDV ASN D 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 8YDV SER D 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 8YDV ASN D 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8YDV LYS D 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8YDV ARG D 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8YDV ASN D 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8YDV LYS D 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8YDV ALA D 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8YDV VAL D 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 8YDV ARG D 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8YDV TYR D 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8YDV HIS D 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8YDV SER D 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASN D 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV SER D 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU D 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASN D 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV LEU D 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV TYR D 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV PHE D 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLN D 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLY D 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV SER D 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLY D 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV LEU D 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASN D 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ASP D 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ILE D 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV PHE D 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU D 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ALA D 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLN D 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV LYS D 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV ILE D 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU D 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV TRP D 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV HIS D 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDV GLU D 562 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 39 ASP LYS LEU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 A 39 VAL ARG LEU ASP GLU GLU GLY HIS GLY GLU ALA SER LEU SEQRES 3 A 39 MET VAL SER ASP LEU ILE TYR GLU PHE MET LYS ARG ASP SEQRES 1 B 230 THR ASN LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA THR SEQRES 2 B 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN PHE SEQRES 4 B 230 ALA PRO PHE SER ALA PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 230 ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SER GLN ILE SEQRES 7 B 230 ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR SEQRES 8 B 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 230 ASN SER ASN LYS LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 230 ASN TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 230 GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY VAL ASN CYS SEQRES 13 B 230 TYR PHE PRO LEU GLN SER TYR GLY PHE ARG PRO THR TYR SEQRES 14 B 230 GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 B 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 B 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 B 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU SEQRES 1 C 39 ASP LYS LEU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 C 39 VAL ARG LEU ASP GLU GLU GLY HIS GLY GLU ALA SER LEU SEQRES 3 C 39 MET VAL SER ASP LEU ILE TYR GLU PHE MET LYS ARG ASP SEQRES 1 D 230 THR ASN LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA THR SEQRES 2 D 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 D 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN PHE SEQRES 4 D 230 ALA PRO PHE SER ALA PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 D 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 D 230 ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SER GLN ILE SEQRES 7 D 230 ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR SEQRES 8 D 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 D 230 ASN SER ASN LYS LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 D 230 ASN TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 D 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 D 230 GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY VAL ASN CYS SEQRES 13 D 230 TYR PHE PRO LEU GLN SER TYR GLY PHE ARG PRO THR TYR SEQRES 14 D 230 GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 D 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 D 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 D 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 D 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU HET GOL B 601 6 HET GOL B 602 6 HET GOL C 101 6 HET GOL C 102 6 HET GOL D 601 6 HET GOL D 602 6 HET GOL D 603 6 HET GOL D 604 6 HET GOL D 605 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 9(C3 H8 O3) FORMUL 14 HOH *297(H2 O) HELIX 1 AA1 ASP A 1 GLU A 19 1 19 HELIX 2 AA2 HIS A 21 LYS A 37 1 17 HELIX 3 AA3 PHE B 338 ASN B 343 1 6 HELIX 4 AA4 SER B 349 TRP B 353 5 5 HELIX 5 AA5 ASP B 364 PHE B 371 5 8 HELIX 6 AA6 SER B 383 ASN B 388 1 6 HELIX 7 AA7 ASN B 405 ILE B 410 5 6 HELIX 8 AA8 GLY B 416 ASN B 422 1 7 HELIX 9 AA9 SER B 438 SER B 443 1 6 HELIX 10 AB1 GLY B 502 HIS B 505 5 4 HELIX 11 AB2 LYS C 2 GLU C 19 1 18 HELIX 12 AB3 HIS C 21 ARG C 38 1 18 HELIX 13 AB4 PRO D 337 ASN D 343 1 7 HELIX 14 AB5 ASP D 364 PHE D 371 5 8 HELIX 15 AB6 SER D 383 ASN D 388 1 6 HELIX 16 AB7 ASN D 405 ILE D 410 5 6 HELIX 17 AB8 GLY D 416 ASN D 422 1 7 HELIX 18 AB9 SER D 438 SER D 443 1 6 HELIX 19 AC1 GLY D 502 HIS D 505 5 4 SHEET 1 AA1 5 ASN B 354 ILE B 358 0 SHEET 2 AA1 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA1 5 PRO B 507 GLU B 516 -1 O VAL B 512 N ASP B 398 SHEET 4 AA1 5 CYS B 432 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA1 5 PHE B 377 CYS B 379 -1 N LYS B 378 O VAL B 433 SHEET 1 AA2 3 CYS B 361 VAL B 362 0 SHEET 2 AA2 3 VAL B 524 CYS B 525 1 O CYS B 525 N CYS B 361 SHEET 3 AA2 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA3 2 ARG B 452 ARG B 454 0 SHEET 2 AA3 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA4 2 TYR B 473 GLN B 474 0 SHEET 2 AA4 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA5 5 ASN D 354 ILE D 358 0 SHEET 2 AA5 5 ASN D 394 ARG D 403 -1 O VAL D 395 N ILE D 358 SHEET 3 AA5 5 PRO D 507 GLU D 516 -1 O VAL D 512 N ASP D 398 SHEET 4 AA5 5 CYS D 432 ASN D 437 -1 N ILE D 434 O VAL D 511 SHEET 5 AA5 5 SER D 375 CYS D 379 -1 N ALA D 376 O ALA D 435 SHEET 1 AA6 3 CYS D 361 ALA D 363 0 SHEET 2 AA6 3 VAL D 524 GLY D 526 1 O CYS D 525 N ALA D 363 SHEET 3 AA6 3 CYS D 391 PHE D 392 -1 N PHE D 392 O VAL D 524 SHEET 1 AA7 2 ARG D 452 ARG D 454 0 SHEET 2 AA7 2 LEU D 492 SER D 494 -1 O GLN D 493 N TYR D 453 SHEET 1 AA8 2 TYR D 473 GLN D 474 0 SHEET 2 AA8 2 CYS D 488 TYR D 489 -1 O TYR D 489 N TYR D 473 SSBOND 1 CYS B 336 CYS B 361 1555 1555 2.04 SSBOND 2 CYS B 379 CYS B 432 1555 1555 2.04 SSBOND 3 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 4 CYS B 480 CYS B 488 1555 1555 2.05 SSBOND 5 CYS D 336 CYS D 361 1555 1555 2.04 SSBOND 6 CYS D 379 CYS D 432 1555 1555 2.05 SSBOND 7 CYS D 391 CYS D 525 1555 1555 2.04 SSBOND 8 CYS D 480 CYS D 488 1555 1555 2.04 CRYST1 87.480 87.480 118.230 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008458 0.00000 CONECT 350 561 CONECT 561 350 CONECT 665 1072 CONECT 755 1814 CONECT 1072 665 CONECT 1471 1520 CONECT 1520 1471 CONECT 1814 755 CONECT 2198 2409 CONECT 2409 2198 CONECT 2553 2960 CONECT 2643 3707 CONECT 2960 2553 CONECT 3359 3408 CONECT 3408 3359 CONECT 3707 2643 CONECT 3742 3743 3744 CONECT 3743 3742 CONECT 3744 3742 3745 3746 CONECT 3745 3744 CONECT 3746 3744 3747 CONECT 3747 3746 CONECT 3748 3749 3750 CONECT 3749 3748 CONECT 3750 3748 3751 3752 CONECT 3751 3750 CONECT 3752 3750 3753 CONECT 3753 3752 CONECT 3754 3755 3756 CONECT 3755 3754 CONECT 3756 3754 3757 3758 CONECT 3757 3756 CONECT 3758 3756 3759 CONECT 3759 3758 CONECT 3760 3761 3762 CONECT 3761 3760 CONECT 3762 3760 3763 3764 CONECT 3763 3762 CONECT 3764 3762 3765 CONECT 3765 3764 CONECT 3766 3767 3768 CONECT 3767 3766 CONECT 3768 3766 3769 3770 CONECT 3769 3768 CONECT 3770 3768 3771 CONECT 3771 3770 CONECT 3772 3773 3774 CONECT 3773 3772 CONECT 3774 3772 3775 3776 CONECT 3775 3774 CONECT 3776 3774 3777 CONECT 3777 3776 CONECT 3778 3779 3780 CONECT 3779 3778 CONECT 3780 3778 3781 3782 CONECT 3781 3780 CONECT 3782 3780 3783 CONECT 3783 3782 CONECT 3784 3785 3786 CONECT 3785 3784 CONECT 3786 3784 3787 3788 CONECT 3787 3786 CONECT 3788 3786 3789 CONECT 3789 3788 CONECT 3790 3791 3792 CONECT 3791 3790 CONECT 3792 3790 3793 3794 CONECT 3793 3792 CONECT 3794 3792 3795 CONECT 3795 3794 MASTER 331 0 9 19 24 0 0 6 4088 4 70 42 END