HEADER VIRAL PROTEIN/INHIBITOR 21-FEB-24 8YDW TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 OMICRON TITLE 2 XBB.1.5 VARIANT SPIKE PROTEIN IN COMPLEX WITH CESPIACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 INHIBITING PEPTIDE CESPIACE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 7 2; SOURCE 8 ORGANISM_TAXID: 2697049; SOURCE 9 GENE: S, 2; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS RBD, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKAMURA,N.NUMOTO,Y.FUJIYOSHI REVDAT 1 15-JAN-25 8YDW 0 JRNL AUTH S.NAKAMURA,Y.TANIMURA,R.NOMURA,H.SUZUKI,K.NISHIKAWA, JRNL AUTH 2 A.KAMEGAWA,N.NUMOTO,A.TANAKA,S.KAWABATA,S.SAKAGUCHI,A.EMI, JRNL AUTH 3 Y.SUZUKI,Y.FUJIYOSHI JRNL TITL DEVELOPMENT OF A SHORT-PEPTIDE INHIBITING ANY SARS-COV-2 JRNL TITL 2 VARIANTS BASED ON STRUCTURAL BIOLOGY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.963 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.83800 REMARK 3 B22 (A**2) : 2.83800 REMARK 3 B33 (A**2) : -9.20600 REMARK 3 B12 (A**2) : 1.41900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1950 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1772 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2648 ; 1.346 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4078 ; 0.769 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 7.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 6.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;15.127 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2294 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 486 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 392 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 52 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 974 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.041 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 942 ; 5.734 ; 6.622 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 942 ; 5.732 ; 6.622 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1174 ; 7.813 ;11.864 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1175 ; 7.809 ;11.866 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1008 ; 6.099 ; 7.019 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1007 ; 6.082 ; 7.015 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1474 ; 8.609 ;12.709 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1475 ; 8.606 ;12.710 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8YDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES (PH 9.5), 20% PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.35667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.71333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.71333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.35667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 333 REMARK 465 ASN B 531 REMARK 465 LEU B 532 REMARK 465 TYR B 533 REMARK 465 PHE B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 SER B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 GLY B 548 REMARK 465 LEU B 549 REMARK 465 ASN B 550 REMARK 465 ASP B 551 REMARK 465 ILE B 552 REMARK 465 PHE B 553 REMARK 465 GLU B 554 REMARK 465 ALA B 555 REMARK 465 GLN B 556 REMARK 465 LYS B 557 REMARK 465 ILE B 558 REMARK 465 GLU B 559 REMARK 465 TRP B 560 REMARK 465 HIS B 561 REMARK 465 GLU B 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 21 50.21 -114.90 REMARK 500 ALA B 352 53.45 -109.42 REMARK 500 TYR B 365 43.36 -91.55 REMARK 500 PHE B 377 69.83 -161.87 REMARK 500 ASN B 422 -52.43 -129.62 REMARK 500 ASP B 428 35.89 -96.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 405 O REMARK 620 2 SER B 408 OG 97.8 REMARK 620 N 1 DBREF 8YDW A 1 39 PDB 8YDW 8YDW 1 39 DBREF 8YDW B 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 SEQADV 8YDW HIS B 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8YDW THR B 346 UNP P0DTC2 ARG 346 VARIANT SEQADV 8YDW ILE B 368 UNP P0DTC2 LEU 368 VARIANT SEQADV 8YDW PHE B 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8YDW PRO B 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8YDW ALA B 376 UNP P0DTC2 THR 376 VARIANT SEQADV 8YDW ASN B 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 8YDW SER B 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 8YDW ASN B 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8YDW LYS B 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8YDW PRO B 445 UNP P0DTC2 VAL 445 VARIANT SEQADV 8YDW SER B 446 UNP P0DTC2 GLY 446 VARIANT SEQADV 8YDW LYS B 460 UNP P0DTC2 ASN 460 VARIANT SEQADV 8YDW ASN B 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8YDW LYS B 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8YDW ALA B 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8YDW PRO B 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 8YDW SER B 490 UNP P0DTC2 PHE 490 VARIANT SEQADV 8YDW ARG B 493 UNP P0DTC2 GLN 493 VARIANT SEQADV 8YDW ARG B 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8YDW TYR B 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8YDW HIS B 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8YDW SER B 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ASN B 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW SER B 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLU B 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ASN B 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW LEU B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW TYR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW PHE B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLN B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLY B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW SER B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLY B 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW LEU B 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ASN B 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ASP B 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ILE B 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW PHE B 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLU B 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ALA B 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLN B 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW LYS B 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW ILE B 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLU B 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW TRP B 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW HIS B 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDW GLU B 562 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 39 ASP LYS LEU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 A 39 VAL ARG LEU ASP GLU GLU GLY HIS GLY GLU ALA SER LEU SEQRES 3 A 39 MET VAL SER ASP LEU ILE TYR GLU PHE MET LYS ARG ASP SEQRES 1 B 230 THR ASN LEU CYS PRO PHE HIS GLU VAL PHE ASN ALA THR SEQRES 2 B 230 THR PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 230 SER ASN CYS VAL ALA ASP TYR SER VAL ILE TYR ASN PHE SEQRES 4 B 230 ALA PRO PHE SER ALA PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 230 ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SER GLN ILE SEQRES 7 B 230 ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR SEQRES 8 B 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 230 ASN SER ASN LYS LEU ASP SER LYS PRO SER GLY ASN TYR SEQRES 10 B 230 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER LYS LEU LYS SEQRES 11 B 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 230 GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY PRO ASN CYS SEQRES 13 B 230 TYR SER PRO LEU ARG SER TYR GLY PHE ARG PRO THR TYR SEQRES 14 B 230 GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 B 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 B 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 B 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU HET GOL B 601 6 HET NA B 602 1 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 NA NA 1+ FORMUL 5 HOH *73(H2 O) HELIX 1 AA1 ASP A 1 GLU A 19 1 19 HELIX 2 AA2 HIS A 21 ARG A 38 1 18 HELIX 3 AA3 PHE B 338 ASN B 343 1 6 HELIX 4 AA4 SER B 383 ASN B 388 1 6 HELIX 5 AA5 ASN B 405 ILE B 410 5 6 HELIX 6 AA6 GLY B 416 ASN B 422 1 7 HELIX 7 AA7 SER B 438 SER B 443 1 6 HELIX 8 AA8 GLY B 502 HIS B 505 5 4 SHEET 1 AA1 5 ASN B 354 ILE B 358 0 SHEET 2 AA1 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA1 5 PRO B 507 GLU B 516 -1 O GLU B 516 N ASN B 394 SHEET 4 AA1 5 CYS B 432 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA1 5 ALA B 376 CYS B 379 -1 N LYS B 378 O VAL B 433 SHEET 1 AA2 3 CYS B 361 ALA B 363 0 SHEET 2 AA2 3 VAL B 524 GLY B 526 1 O CYS B 525 N ALA B 363 SHEET 3 AA2 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA3 2 LEU B 452 ARG B 454 0 SHEET 2 AA3 2 LEU B 492 SER B 494 -1 O ARG B 493 N TYR B 453 SHEET 1 AA4 2 TYR B 473 GLN B 474 0 SHEET 2 AA4 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SSBOND 1 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 2 CYS B 379 CYS B 432 1555 1555 2.14 SSBOND 3 CYS B 391 CYS B 525 1555 1555 2.06 SSBOND 4 CYS B 480 CYS B 488 1555 1555 2.08 LINK O ASN B 405 NA NA B 602 1555 1555 2.37 LINK OG SER B 408 NA NA B 602 1555 1555 2.52 CRYST1 74.760 74.760 100.070 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013376 0.007723 0.000000 0.00000 SCALE2 0.000000 0.015445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009993 0.00000