HEADER CYTOKINE 29-FEB-24 8YI7 TITLE THE CRYO-EM STRUCTURE OF IL-12, RECEPTOR SUBUNIT BETA-1 AND RECEPTOR TITLE 2 SUBUNIT BETA-2 COMPLEX, LOCAL REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-12 SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-12A,CYTOTOXIC LYMPHOCYTE MATURATION FACTOR 35 KDA COMPND 5 SUBUNIT,CLMF P35,IL-12 SUBUNIT P35,NK CELL STIMULATORY FACTOR CHAIN COMPND 6 1,NKSF1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERLEUKIN-12 SUBUNIT BETA; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: IL-12B,CYTOTOXIC LYMPHOCYTE MATURATION FACTOR 40 KDA COMPND 12 SUBUNIT,CLMF P40,IL-12 SUBUNIT P40,NK CELL STIMULATORY FACTOR CHAIN COMPND 13 2,NKSF2; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: INTERLEUKIN-12 RECEPTOR SUBUNIT BETA-2; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: IL-12 RECEPTOR SUBUNIT BETA-2,IL-12R SUBUNIT BETA-2,IL-12R- COMPND 19 BETA-2,IL-12RB2; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: INTERLEUKIN-12 RECEPTOR SUBUNIT BETA-1; COMPND 23 CHAIN: D; COMPND 24 SYNONYM: IL-12 RECEPTOR SUBUNIT BETA-1,IL-12R SUBUNIT BETA-1,IL-12R- COMPND 25 BETA-1,IL-12RB1,IL-12 RECEPTOR BETA COMPONENT; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL12A, NKSF1; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: IL12B, NKSF2; SOURCE 13 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: IL12RB2; SOURCE 20 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: IL12RB1, IL12R, IL12RB; SOURCE 27 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 274590 KEYWDS IL-12, IL-12RB1, IL-12RB2, RECEPTOR COMPLEX, CYTOKINE EXPDTA ELECTRON MICROSCOPY AUTHOR H.Q.CHEN,X.F.GE REVDAT 3 21-AUG-24 8YI7 1 JRNL REVDAT 2 14-AUG-24 8YI7 1 JRNL REVDAT 1 24-JUL-24 8YI7 0 JRNL AUTH H.CHEN,X.GE,C.LI,J.ZENG,X.WANG JRNL TITL STRUCTURE AND ASSEMBLY OF THE HUMAN IL-12 SIGNALING COMPLEX. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 39111304 JRNL DOI 10.1016/J.STR.2024.07.010 REMARK 2 REMARK 2 RESOLUTION. 3.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.570 REMARK 3 NUMBER OF PARTICLES : 332015 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8YI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045706. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THE TERNARY COMPLEX OF IL-12 REMARK 245 WITH IL-12R BETA-1 AND IL-12R REMARK 245 BETA-2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 ARG A 23 REMARK 465 ASN A 24 REMARK 465 LEU A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 ALA A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 ASP A 31 REMARK 465 PRO A 32 REMARK 465 GLY A 33 REMARK 465 SER A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 SER B 281 REMARK 465 LYS B 282 REMARK 465 ARG B 283 REMARK 465 SER B 328 REMARK 465 VAL C 122 REMARK 465 ALA C 123 REMARK 465 PRO C 124 REMARK 465 GLU C 125 REMARK 465 GLN C 126 REMARK 465 PRO C 127 REMARK 465 GLN C 128 REMARK 465 ASN C 129 REMARK 465 LEU C 130 REMARK 465 SER C 131 REMARK 465 CYS C 132 REMARK 465 ILE C 133 REMARK 465 GLN C 134 REMARK 465 LYS C 135 REMARK 465 GLY C 136 REMARK 465 GLU C 137 REMARK 465 GLN C 138 REMARK 465 GLY C 139 REMARK 465 THR C 140 REMARK 465 VAL C 141 REMARK 465 ALA C 142 REMARK 465 CYS C 143 REMARK 465 THR C 144 REMARK 465 TRP C 145 REMARK 465 GLU C 146 REMARK 465 ARG C 147 REMARK 465 GLY C 148 REMARK 465 ARG C 149 REMARK 465 ASP C 150 REMARK 465 THR C 151 REMARK 465 HIS C 152 REMARK 465 LEU C 153 REMARK 465 TYR C 154 REMARK 465 THR C 155 REMARK 465 GLU C 156 REMARK 465 TYR C 157 REMARK 465 THR C 158 REMARK 465 LEU C 159 REMARK 465 GLN C 160 REMARK 465 LEU C 161 REMARK 465 SER C 162 REMARK 465 GLY C 163 REMARK 465 PRO C 164 REMARK 465 LYS C 165 REMARK 465 ASN C 166 REMARK 465 LEU C 167 REMARK 465 THR C 168 REMARK 465 TRP C 169 REMARK 465 GLN C 170 REMARK 465 LYS C 171 REMARK 465 GLN C 172 REMARK 465 CYS C 173 REMARK 465 LYS C 174 REMARK 465 ASP C 175 REMARK 465 ILE C 176 REMARK 465 TYR C 177 REMARK 465 CYS C 178 REMARK 465 ASP C 179 REMARK 465 TYR C 180 REMARK 465 LEU C 181 REMARK 465 ASP C 182 REMARK 465 PHE C 183 REMARK 465 GLY C 184 REMARK 465 ILE C 185 REMARK 465 ASN C 186 REMARK 465 LEU C 187 REMARK 465 THR C 188 REMARK 465 PRO C 189 REMARK 465 GLU C 190 REMARK 465 SER C 191 REMARK 465 PRO C 192 REMARK 465 GLU C 193 REMARK 465 SER C 194 REMARK 465 ASN C 195 REMARK 465 PHE C 196 REMARK 465 THR C 197 REMARK 465 ALA C 198 REMARK 465 LYS C 199 REMARK 465 VAL C 200 REMARK 465 THR C 201 REMARK 465 ALA C 202 REMARK 465 VAL C 203 REMARK 465 ASN C 204 REMARK 465 SER C 205 REMARK 465 LEU C 206 REMARK 465 GLY C 207 REMARK 465 SER C 208 REMARK 465 SER C 209 REMARK 465 SER C 210 REMARK 465 SER C 211 REMARK 465 LEU C 212 REMARK 465 PRO C 213 REMARK 465 SER C 214 REMARK 465 THR C 215 REMARK 465 PHE C 216 REMARK 465 THR C 217 REMARK 465 PHE C 218 REMARK 465 LEU C 219 REMARK 465 ASP C 220 REMARK 465 ILE C 221 REMARK 465 VAL C 222 REMARK 465 ARG C 223 REMARK 465 PRO C 224 REMARK 465 LEU C 225 REMARK 465 PRO C 226 REMARK 465 PRO C 227 REMARK 465 TRP C 228 REMARK 465 ASP C 229 REMARK 465 ILE C 230 REMARK 465 ARG C 231 REMARK 465 ILE C 232 REMARK 465 LYS C 233 REMARK 465 PHE C 234 REMARK 465 GLN C 235 REMARK 465 LYS C 236 REMARK 465 ALA C 237 REMARK 465 SER C 238 REMARK 465 VAL C 239 REMARK 465 SER C 240 REMARK 465 ARG C 241 REMARK 465 CYS C 242 REMARK 465 THR C 243 REMARK 465 LEU C 244 REMARK 465 TYR C 245 REMARK 465 TRP C 246 REMARK 465 ARG C 247 REMARK 465 ASP C 248 REMARK 465 GLU C 249 REMARK 465 GLY C 250 REMARK 465 LEU C 251 REMARK 465 VAL C 252 REMARK 465 LEU C 253 REMARK 465 LEU C 254 REMARK 465 ASN C 255 REMARK 465 ARG C 256 REMARK 465 LEU C 257 REMARK 465 ARG C 258 REMARK 465 TYR C 259 REMARK 465 ARG C 260 REMARK 465 PRO C 261 REMARK 465 SER C 262 REMARK 465 ASN C 263 REMARK 465 SER C 264 REMARK 465 ARG C 265 REMARK 465 LEU C 266 REMARK 465 TRP C 267 REMARK 465 ASN C 268 REMARK 465 MET C 269 REMARK 465 VAL C 270 REMARK 465 ASN C 271 REMARK 465 VAL C 272 REMARK 465 THR C 273 REMARK 465 LYS C 274 REMARK 465 ALA C 275 REMARK 465 LYS C 276 REMARK 465 GLY C 277 REMARK 465 ARG C 278 REMARK 465 HIS C 279 REMARK 465 ASP C 280 REMARK 465 LEU C 281 REMARK 465 LEU C 282 REMARK 465 ASP C 283 REMARK 465 LEU C 284 REMARK 465 LYS C 285 REMARK 465 PRO C 286 REMARK 465 PHE C 287 REMARK 465 THR C 288 REMARK 465 GLU C 289 REMARK 465 TYR C 290 REMARK 465 GLU C 291 REMARK 465 PHE C 292 REMARK 465 GLN C 293 REMARK 465 ILE C 294 REMARK 465 SER C 295 REMARK 465 SER C 296 REMARK 465 LYS C 297 REMARK 465 LEU C 298 REMARK 465 HIS C 299 REMARK 465 LEU C 300 REMARK 465 TYR C 301 REMARK 465 LYS C 302 REMARK 465 GLY C 303 REMARK 465 SER C 304 REMARK 465 TRP C 305 REMARK 465 SER C 306 REMARK 465 ASP C 307 REMARK 465 TRP C 308 REMARK 465 SER C 309 REMARK 465 GLU C 310 REMARK 465 SER C 311 REMARK 465 LEU C 312 REMARK 465 ARG C 313 REMARK 465 ALA C 314 REMARK 465 GLN C 315 REMARK 465 THR C 316 REMARK 465 PRO C 317 REMARK 465 GLU C 318 REMARK 465 GLU C 319 REMARK 465 HIS C 320 REMARK 465 HIS C 321 REMARK 465 HIS C 322 REMARK 465 HIS C 323 REMARK 465 HIS C 324 REMARK 465 HIS C 325 REMARK 465 CYS D 24 REMARK 465 SER D 136 REMARK 465 VAL D 137 REMARK 465 LYS D 138 REMARK 465 TYR D 139 REMARK 465 GLU D 140 REMARK 465 PRO D 141 REMARK 465 PRO D 142 REMARK 465 LEU D 143 REMARK 465 GLY D 144 REMARK 465 ASP D 145 REMARK 465 ILE D 146 REMARK 465 LYS D 147 REMARK 465 VAL D 148 REMARK 465 SER D 149 REMARK 465 LYS D 150 REMARK 465 LEU D 151 REMARK 465 ALA D 152 REMARK 465 GLY D 153 REMARK 465 GLN D 154 REMARK 465 LEU D 155 REMARK 465 ARG D 156 REMARK 465 MET D 157 REMARK 465 GLU D 158 REMARK 465 TRP D 159 REMARK 465 GLU D 160 REMARK 465 THR D 161 REMARK 465 PRO D 162 REMARK 465 ASP D 163 REMARK 465 ASN D 164 REMARK 465 GLN D 165 REMARK 465 VAL D 166 REMARK 465 GLY D 167 REMARK 465 ALA D 168 REMARK 465 GLU D 169 REMARK 465 VAL D 170 REMARK 465 GLN D 171 REMARK 465 PHE D 172 REMARK 465 ARG D 173 REMARK 465 HIS D 174 REMARK 465 ARG D 175 REMARK 465 THR D 176 REMARK 465 PRO D 177 REMARK 465 SER D 178 REMARK 465 SER D 179 REMARK 465 PRO D 180 REMARK 465 TRP D 181 REMARK 465 LYS D 182 REMARK 465 LEU D 183 REMARK 465 GLY D 184 REMARK 465 ASP D 185 REMARK 465 CYS D 186 REMARK 465 GLY D 187 REMARK 465 PRO D 188 REMARK 465 GLN D 189 REMARK 465 ASP D 190 REMARK 465 ASP D 191 REMARK 465 ASP D 192 REMARK 465 THR D 193 REMARK 465 GLU D 194 REMARK 465 SER D 195 REMARK 465 CYS D 196 REMARK 465 LEU D 197 REMARK 465 CYS D 198 REMARK 465 PRO D 199 REMARK 465 LEU D 200 REMARK 465 GLU D 201 REMARK 465 MET D 202 REMARK 465 ASN D 203 REMARK 465 VAL D 204 REMARK 465 ALA D 205 REMARK 465 GLN D 206 REMARK 465 GLU D 207 REMARK 465 PHE D 208 REMARK 465 GLN D 209 REMARK 465 LEU D 210 REMARK 465 ARG D 211 REMARK 465 ARG D 212 REMARK 465 ARG D 213 REMARK 465 GLN D 214 REMARK 465 LEU D 215 REMARK 465 GLY D 216 REMARK 465 SER D 217 REMARK 465 GLN D 218 REMARK 465 GLY D 219 REMARK 465 SER D 220 REMARK 465 SER D 221 REMARK 465 TRP D 222 REMARK 465 SER D 223 REMARK 465 LYS D 224 REMARK 465 TRP D 225 REMARK 465 SER D 226 REMARK 465 SER D 227 REMARK 465 PRO D 228 REMARK 465 VAL D 229 REMARK 465 CYS D 230 REMARK 465 VAL D 231 REMARK 465 PRO D 232 REMARK 465 PRO D 233 REMARK 465 GLU D 234 REMARK 465 ASN D 235 REMARK 465 PRO D 236 REMARK 465 HIS D 237 REMARK 465 HIS D 238 REMARK 465 HIS D 239 REMARK 465 HIS D 240 REMARK 465 HIS D 241 REMARK 465 HIS D 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU B 117 CG2 THR B 146 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 75 36.42 -87.59 REMARK 500 LYS A 92 -56.89 -138.01 REMARK 500 GLU A 94 -8.47 68.92 REMARK 500 ARG A 151 65.55 -119.08 REMARK 500 THR B 169 72.23 -109.70 REMARK 500 VAL B 180 74.16 -110.31 REMARK 500 LYS B 185 62.94 62.19 REMARK 500 LYS B 217 -121.09 55.53 REMARK 500 ASN B 303 40.77 -93.51 REMARK 500 ARG C 65 -33.04 -136.16 REMARK 500 LEU D 133 -4.97 81.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8XRP RELATED DB: PDB REMARK 900 RELATED ID: EMD-38609 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-39311 RELATED DB: EMDB REMARK 900 THE CRYO-EM STRUCTURE OF IL-12, RECEPTOR SUBUNIT BETA-1 AND REMARK 900 RECEPTOR SUBUNIT BETA-2 COMPLEX, LOCAL REFINEMENT DBREF 8YI7 A 19 219 UNP P29459 IL12A_HUMAN 19 219 DBREF 8YI7 B 22 328 UNP P29460 IL12B_HUMAN 22 328 DBREF 8YI7 C 24 319 UNP Q99665 I12R2_HUMAN 24 319 DBREF 8YI7 D 24 236 UNP P42701 I12R1_HUMAN 24 236 SEQADV 8YI7 HIS A 220 UNP P29459 EXPRESSION TAG SEQADV 8YI7 HIS A 221 UNP P29459 EXPRESSION TAG SEQADV 8YI7 HIS A 222 UNP P29459 EXPRESSION TAG SEQADV 8YI7 HIS A 223 UNP P29459 EXPRESSION TAG SEQADV 8YI7 HIS A 224 UNP P29459 EXPRESSION TAG SEQADV 8YI7 HIS A 225 UNP P29459 EXPRESSION TAG SEQADV 8YI7 HIS C 320 UNP Q99665 EXPRESSION TAG SEQADV 8YI7 HIS C 321 UNP Q99665 EXPRESSION TAG SEQADV 8YI7 HIS C 322 UNP Q99665 EXPRESSION TAG SEQADV 8YI7 HIS C 323 UNP Q99665 EXPRESSION TAG SEQADV 8YI7 HIS C 324 UNP Q99665 EXPRESSION TAG SEQADV 8YI7 HIS C 325 UNP Q99665 EXPRESSION TAG SEQADV 8YI7 HIS D 237 UNP P42701 EXPRESSION TAG SEQADV 8YI7 HIS D 238 UNP P42701 EXPRESSION TAG SEQADV 8YI7 HIS D 239 UNP P42701 EXPRESSION TAG SEQADV 8YI7 HIS D 240 UNP P42701 EXPRESSION TAG SEQADV 8YI7 HIS D 241 UNP P42701 EXPRESSION TAG SEQADV 8YI7 HIS D 242 UNP P42701 EXPRESSION TAG SEQRES 1 A 207 LEU SER LEU ALA ARG ASN LEU PRO VAL ALA THR PRO ASP SEQRES 2 A 207 PRO GLY MET PHE PRO CYS LEU HIS HIS SER GLN ASN LEU SEQRES 3 A 207 LEU ARG ALA VAL SER ASN MET LEU GLN LYS ALA ARG GLN SEQRES 4 A 207 THR LEU GLU PHE TYR PRO CYS THR SER GLU GLU ILE ASP SEQRES 5 A 207 HIS GLU ASP ILE THR LYS ASP LYS THR SER THR VAL GLU SEQRES 6 A 207 ALA CYS LEU PRO LEU GLU LEU THR LYS ASN GLU SER CYS SEQRES 7 A 207 LEU ASN SER ARG GLU THR SER PHE ILE THR ASN GLY SER SEQRES 8 A 207 CYS LEU ALA SER ARG LYS THR SER PHE MET MET ALA LEU SEQRES 9 A 207 CYS LEU SER SER ILE TYR GLU ASP LEU LYS MET TYR GLN SEQRES 10 A 207 VAL GLU PHE LYS THR MET ASN ALA LYS LEU LEU MET ASP SEQRES 11 A 207 PRO LYS ARG GLN ILE PHE LEU ASP GLN ASN MET LEU ALA SEQRES 12 A 207 VAL ILE ASP GLU LEU MET GLN ALA LEU ASN PHE ASN SER SEQRES 13 A 207 GLU THR VAL PRO GLN LYS SER SER LEU GLU GLU PRO ASP SEQRES 14 A 207 PHE TYR LYS THR LYS ILE LYS LEU CYS ILE LEU LEU HIS SEQRES 15 A 207 ALA PHE ARG ILE ARG ALA VAL THR ILE ASP ARG VAL MET SEQRES 16 A 207 SER TYR LEU ASN ALA SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 307 ALA ILE TRP GLU LEU LYS LYS ASP VAL TYR VAL VAL GLU SEQRES 2 B 307 LEU ASP TRP TYR PRO ASP ALA PRO GLY GLU MET VAL VAL SEQRES 3 B 307 LEU THR CYS ASP THR PRO GLU GLU ASP GLY ILE THR TRP SEQRES 4 B 307 THR LEU ASP GLN SER SER GLU VAL LEU GLY SER GLY LYS SEQRES 5 B 307 THR LEU THR ILE GLN VAL LYS GLU PHE GLY ASP ALA GLY SEQRES 6 B 307 GLN TYR THR CYS HIS LYS GLY GLY GLU VAL LEU SER HIS SEQRES 7 B 307 SER LEU LEU LEU LEU HIS LYS LYS GLU ASP GLY ILE TRP SEQRES 8 B 307 SER THR ASP ILE LEU LYS ASP GLN LYS GLU PRO LYS ASN SEQRES 9 B 307 LYS THR PHE LEU ARG CYS GLU ALA LYS ASN TYR SER GLY SEQRES 10 B 307 ARG PHE THR CYS TRP TRP LEU THR THR ILE SER THR ASP SEQRES 11 B 307 LEU THR PHE SER VAL LYS SER SER ARG GLY SER SER ASP SEQRES 12 B 307 PRO GLN GLY VAL THR CYS GLY ALA ALA THR LEU SER ALA SEQRES 13 B 307 GLU ARG VAL ARG GLY ASP ASN LYS GLU TYR GLU TYR SER SEQRES 14 B 307 VAL GLU CYS GLN GLU ASP SER ALA CYS PRO ALA ALA GLU SEQRES 15 B 307 GLU SER LEU PRO ILE GLU VAL MET VAL ASP ALA VAL HIS SEQRES 16 B 307 LYS LEU LYS TYR GLU ASN TYR THR SER SER PHE PHE ILE SEQRES 17 B 307 ARG ASP ILE ILE LYS PRO ASP PRO PRO LYS ASN LEU GLN SEQRES 18 B 307 LEU LYS PRO LEU LYS ASN SER ARG GLN VAL GLU VAL SER SEQRES 19 B 307 TRP GLU TYR PRO ASP THR TRP SER THR PRO HIS SER TYR SEQRES 20 B 307 PHE SER LEU THR PHE CYS VAL GLN VAL GLN GLY LYS SER SEQRES 21 B 307 LYS ARG GLU LYS LYS ASP ARG VAL PHE THR ASP LYS THR SEQRES 22 B 307 SER ALA THR VAL ILE CYS ARG LYS ASN ALA SER ILE SER SEQRES 23 B 307 VAL ARG ALA GLN ASP ARG TYR TYR SER SER SER TRP SER SEQRES 24 B 307 GLU TRP ALA SER VAL PRO CYS SER SEQRES 1 C 302 LYS ILE ASP ALA CYS LYS ARG GLY ASP VAL THR VAL LYS SEQRES 2 C 302 PRO SER HIS VAL ILE LEU LEU GLY SER THR VAL ASN ILE SEQRES 3 C 302 THR CYS SER LEU LYS PRO ARG GLN GLY CYS PHE HIS TYR SEQRES 4 C 302 SER ARG ARG ASN LYS LEU ILE LEU TYR LYS PHE ASP ARG SEQRES 5 C 302 ARG ILE ASN PHE HIS HIS GLY HIS SER LEU ASN SER GLN SEQRES 6 C 302 VAL THR GLY LEU PRO LEU GLY THR THR LEU PHE VAL CYS SEQRES 7 C 302 LYS LEU ALA CYS ILE ASN SER ASP GLU ILE GLN ILE CYS SEQRES 8 C 302 GLY ALA GLU ILE PHE VAL GLY VAL ALA PRO GLU GLN PRO SEQRES 9 C 302 GLN ASN LEU SER CYS ILE GLN LYS GLY GLU GLN GLY THR SEQRES 10 C 302 VAL ALA CYS THR TRP GLU ARG GLY ARG ASP THR HIS LEU SEQRES 11 C 302 TYR THR GLU TYR THR LEU GLN LEU SER GLY PRO LYS ASN SEQRES 12 C 302 LEU THR TRP GLN LYS GLN CYS LYS ASP ILE TYR CYS ASP SEQRES 13 C 302 TYR LEU ASP PHE GLY ILE ASN LEU THR PRO GLU SER PRO SEQRES 14 C 302 GLU SER ASN PHE THR ALA LYS VAL THR ALA VAL ASN SER SEQRES 15 C 302 LEU GLY SER SER SER SER LEU PRO SER THR PHE THR PHE SEQRES 16 C 302 LEU ASP ILE VAL ARG PRO LEU PRO PRO TRP ASP ILE ARG SEQRES 17 C 302 ILE LYS PHE GLN LYS ALA SER VAL SER ARG CYS THR LEU SEQRES 18 C 302 TYR TRP ARG ASP GLU GLY LEU VAL LEU LEU ASN ARG LEU SEQRES 19 C 302 ARG TYR ARG PRO SER ASN SER ARG LEU TRP ASN MET VAL SEQRES 20 C 302 ASN VAL THR LYS ALA LYS GLY ARG HIS ASP LEU LEU ASP SEQRES 21 C 302 LEU LYS PRO PHE THR GLU TYR GLU PHE GLN ILE SER SER SEQRES 22 C 302 LYS LEU HIS LEU TYR LYS GLY SER TRP SER ASP TRP SER SEQRES 23 C 302 GLU SER LEU ARG ALA GLN THR PRO GLU GLU HIS HIS HIS SEQRES 24 C 302 HIS HIS HIS SEQRES 1 D 219 CYS ARG THR SER GLU CYS CYS PHE GLN ASP PRO PRO TYR SEQRES 2 D 219 PRO ASP ALA ASP SER GLY SER ALA SER GLY PRO ARG ASP SEQRES 3 D 219 LEU ARG CYS TYR ARG ILE SER SER ASP ARG TYR GLU CYS SEQRES 4 D 219 SER TRP GLN TYR GLU GLY PRO THR ALA GLY VAL SER HIS SEQRES 5 D 219 PHE LEU ARG CYS CYS LEU SER SER GLY ARG CYS CYS TYR SEQRES 6 D 219 PHE ALA ALA GLY SER ALA THR ARG LEU GLN PHE SER ASP SEQRES 7 D 219 GLN ALA GLY VAL SER VAL LEU TYR THR VAL THR LEU TRP SEQRES 8 D 219 VAL GLU SER TRP ALA ARG ASN GLN THR GLU LYS SER PRO SEQRES 9 D 219 GLU VAL THR LEU GLN LEU TYR ASN SER VAL LYS TYR GLU SEQRES 10 D 219 PRO PRO LEU GLY ASP ILE LYS VAL SER LYS LEU ALA GLY SEQRES 11 D 219 GLN LEU ARG MET GLU TRP GLU THR PRO ASP ASN GLN VAL SEQRES 12 D 219 GLY ALA GLU VAL GLN PHE ARG HIS ARG THR PRO SER SER SEQRES 13 D 219 PRO TRP LYS LEU GLY ASP CYS GLY PRO GLN ASP ASP ASP SEQRES 14 D 219 THR GLU SER CYS LEU CYS PRO LEU GLU MET ASN VAL ALA SEQRES 15 D 219 GLN GLU PHE GLN LEU ARG ARG ARG GLN LEU GLY SER GLN SEQRES 16 D 219 GLY SER SER TRP SER LYS TRP SER SER PRO VAL CYS VAL SEQRES 17 D 219 PRO PRO GLU ASN PRO HIS HIS HIS HIS HIS HIS HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG C 401 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 HELIX 1 AA1 PHE A 35 LEU A 59 1 25 HELIX 2 AA2 SER A 80 CYS A 85 1 6 HELIX 3 AA3 SER A 117 MET A 147 1 31 HELIX 4 AA4 ASP A 156 ASN A 171 1 16 HELIX 5 AA5 ASP A 187 ALA A 218 1 32 HELIX 6 AA6 GLU B 81 ALA B 85 5 5 HELIX 7 AA7 PHE B 228 ILE B 233 1 6 SHEET 1 AA1 6 ILE B 23 LYS B 27 0 SHEET 2 AA1 6 VAL B 30 ASP B 36 -1 O VAL B 30 N LYS B 27 SHEET 3 AA1 6 GLU B 95 GLU B 108 1 O HIS B 105 N VAL B 33 SHEET 4 AA1 6 TYR B 88 LYS B 92 -1 N TYR B 88 O SER B 100 SHEET 5 AA1 6 THR B 59 THR B 61 -1 N THR B 61 O THR B 89 SHEET 6 AA1 6 GLY B 70 SER B 71 -1 O GLY B 70 N TRP B 60 SHEET 1 AA2 4 ILE B 23 LYS B 27 0 SHEET 2 AA2 4 VAL B 30 ASP B 36 -1 O VAL B 30 N LYS B 27 SHEET 3 AA2 4 GLU B 95 GLU B 108 1 O HIS B 105 N VAL B 33 SHEET 4 AA2 4 ILE B 111 TRP B 112 -1 O ILE B 111 N GLU B 108 SHEET 1 AA3 2 VAL B 47 THR B 49 0 SHEET 2 AA3 2 THR B 74 THR B 76 -1 O LEU B 75 N LEU B 48 SHEET 1 AA4 4 ARG B 130 ALA B 133 0 SHEET 2 AA4 4 ARG B 139 THR B 146 -1 O TRP B 143 N ARG B 130 SHEET 3 AA4 4 TYR B 187 GLN B 194 -1 O CYS B 193 N PHE B 140 SHEET 4 AA4 4 THR B 174 GLU B 178 -1 N SER B 176 O GLU B 188 SHEET 1 AA5 3 LEU B 152 THR B 153 0 SHEET 2 AA5 3 VAL B 215 HIS B 216 -1 O VAL B 215 N THR B 153 SHEET 3 AA5 3 LYS B 219 TYR B 220 -1 O LYS B 219 N HIS B 216 SHEET 1 AA6 3 VAL B 156 ARG B 160 0 SHEET 2 AA6 3 ILE B 208 VAL B 212 -1 O MET B 211 N LYS B 157 SHEET 3 AA6 3 TYR B 223 PHE B 227 -1 O SER B 225 N VAL B 210 SHEET 1 AA7 3 LYS B 239 PRO B 245 0 SHEET 2 AA7 3 GLN B 251 GLU B 257 -1 O GLU B 253 N LYS B 244 SHEET 3 AA7 3 SER B 295 ILE B 299 -1 O ALA B 296 N VAL B 254 SHEET 1 AA8 4 VAL B 289 THR B 291 0 SHEET 2 AA8 4 LEU B 271 GLN B 276 -1 N PHE B 273 O THR B 291 SHEET 3 AA8 4 ALA B 304 ASP B 312 -1 O GLN B 311 N THR B 272 SHEET 4 AA8 4 ALA B 323 CYS B 327 -1 O ALA B 323 N VAL B 308 SHEET 1 AA9 3 GLY C 31 THR C 34 0 SHEET 2 AA9 3 THR C 50 LEU C 53 -1 O THR C 50 N THR C 34 SHEET 3 AA9 3 LEU C 85 ASN C 86 -1 O LEU C 85 N CYS C 51 SHEET 1 AB1 5 VAL C 40 LEU C 42 0 SHEET 2 AB1 5 ILE C 111 GLY C 121 1 O GLY C 121 N ILE C 41 SHEET 3 AB1 5 GLY C 95 ALA C 104 -1 N CYS C 101 O CYS C 114 SHEET 4 AB1 5 LYS C 67 LYS C 72 -1 N TYR C 71 O VAL C 100 SHEET 5 AB1 5 ARG C 76 HIS C 80 -1 O ILE C 77 N LEU C 70 SHEET 1 AB2 3 PRO D 47 SER D 56 0 SHEET 2 AB2 3 ARG D 59 TYR D 66 -1 O GLN D 65 N ARG D 48 SHEET 3 AB2 3 ARG D 96 PHE D 99 -1 O LEU D 97 N CYS D 62 SHEET 1 AB3 4 CYS D 87 TYR D 88 0 SHEET 2 AB3 4 HIS D 75 LEU D 81 -1 N CYS D 79 O CYS D 87 SHEET 3 AB3 4 VAL D 111 ALA D 119 -1 O GLU D 116 N PHE D 76 SHEET 4 AB3 4 GLN D 122 LYS D 125 -1 O GLU D 124 N SER D 117 SHEET 1 AB4 4 CYS D 87 TYR D 88 0 SHEET 2 AB4 4 HIS D 75 LEU D 81 -1 N CYS D 79 O CYS D 87 SHEET 3 AB4 4 VAL D 111 ALA D 119 -1 O GLU D 116 N PHE D 76 SHEET 4 AB4 4 VAL D 129 LEU D 131 -1 O VAL D 129 N LEU D 113 SSBOND 1 CYS A 37 CYS A 110 1555 1555 2.03 SSBOND 2 CYS A 64 CYS A 196 1555 1555 2.03 SSBOND 3 CYS A 85 CYS A 123 1555 1555 2.03 SSBOND 4 CYS A 96 CYS B 199 1555 1555 2.25 SSBOND 5 CYS B 50 CYS B 90 1555 1555 2.03 SSBOND 6 CYS B 131 CYS B 142 1555 1555 2.04 SSBOND 7 CYS B 170 CYS B 193 1555 1555 2.03 SSBOND 8 CYS B 300 CYS B 327 1555 1555 2.03 SSBOND 9 CYS C 28 CYS C 114 1555 1555 2.02 SSBOND 10 CYS C 51 CYS C 101 1555 1555 2.03 SSBOND 11 CYS C 59 CYS C 105 1555 1555 2.04 SSBOND 12 CYS D 29 CYS D 87 1555 1555 2.03 SSBOND 13 CYS D 52 CYS D 62 1555 1555 2.03 SSBOND 14 CYS D 80 CYS D 86 1555 1555 2.05 LINK ND2 ASN B 222 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN C 48 C1 NAG C 401 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 CISPEP 1 THR B 264 PRO B 265 0 7.10 CISPEP 2 LYS C 36 PRO C 37 0 -12.91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000