HEADER LYASE 02-MAR-24 8YJN TITLE STRUCTURE OF E. COLI GLYCYL RADICAL ENZYME YBIW WITH BOUND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DEHYDRATASE YBIW; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YBIW, B0823, JW0807; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCYL RADICAL ENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.XUE,Y.WEI,R.C.ROBINSON,W.S.YEW,Y.ZHANG REVDAT 2 09-OCT-24 8YJN 1 JRNL REVDAT 1 02-OCT-24 8YJN 0 JRNL AUTH K.MA,B.XUE,R.CHU,Y.ZHENG,S.SHARMA,L.JIANG,M.HU,Y.XIE,Y.HU, JRNL AUTH 2 T.TAO,Y.ZHOU,D.LIU,Z.LI,Q.YANG,Y.CHEN,S.WU,Y.TONG, JRNL AUTH 3 R.C.ROBINSON,W.S.YEW,X.JIN,Y.LIU,H.ZHAO,E.L.ANG,Y.WEI, JRNL AUTH 4 Y.ZHANG JRNL TITL A WIDESPREAD RADICAL-MEDIATED GLYCOLYSIS PATHWAY. JRNL REF J.AM.CHEM.SOC. V. 146 26187 2024 JRNL REFN ESSN 1520-5126 JRNL PMID 39283600 JRNL DOI 10.1021/JACS.4C07718 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8400 - 6.2200 1.00 2819 128 0.1488 0.1889 REMARK 3 2 6.2200 - 4.9400 1.00 2696 145 0.1624 0.1926 REMARK 3 3 4.9400 - 4.3200 1.00 2728 122 0.1334 0.1559 REMARK 3 4 4.3200 - 3.9200 1.00 2679 144 0.1416 0.1729 REMARK 3 5 3.9200 - 3.6400 1.00 2659 145 0.1622 0.1715 REMARK 3 6 3.6400 - 3.4300 1.00 2671 130 0.1709 0.2082 REMARK 3 7 3.4300 - 3.2500 1.00 2673 137 0.2010 0.2353 REMARK 3 8 3.2500 - 3.1100 1.00 2649 133 0.2022 0.2671 REMARK 3 9 3.1100 - 2.9900 1.00 2652 148 0.1888 0.2386 REMARK 3 10 2.9900 - 2.8900 1.00 2651 142 0.1988 0.2884 REMARK 3 11 2.8900 - 2.8000 1.00 2596 171 0.1987 0.2324 REMARK 3 12 2.8000 - 2.7200 1.00 2646 151 0.2059 0.2572 REMARK 3 13 2.7200 - 2.6500 1.00 2646 133 0.2077 0.2544 REMARK 3 14 2.6500 - 2.5800 1.00 2647 143 0.2200 0.2782 REMARK 3 15 2.5800 - 2.5200 1.00 2651 129 0.2106 0.2532 REMARK 3 16 2.5200 - 2.4700 1.00 2633 131 0.2126 0.2697 REMARK 3 17 2.4700 - 2.4200 0.98 2619 128 0.2480 0.3242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6451 REMARK 3 ANGLE : 0.868 8750 REMARK 3 CHIRALITY : 0.051 969 REMARK 3 PLANARITY : 0.008 1149 REMARK 3 DIHEDRAL : 5.879 882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH 8.0, 1 M SODIUM REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 103.52000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.27750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 103.52000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.27750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 103.52000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.27750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 103.52000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.27750 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 105.27750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 105.27750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.27750 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 105.27750 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 103.52000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 103.52000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 103.52000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 57.46300 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 103.52000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -57.46300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 103.52000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1339 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLN A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 108 38.14 -146.63 REMARK 500 ALA A 164 -129.83 49.14 REMARK 500 HIS A 255 -42.44 -146.02 REMARK 500 GLN A 305 25.56 47.58 REMARK 500 CYS A 441 -82.14 -105.23 REMARK 500 MET A 457 -156.41 -86.75 REMARK 500 GLU A 471 57.76 -155.84 REMARK 500 ASN A 496 169.58 176.73 REMARK 500 ASP A 541 52.86 -119.38 REMARK 500 ILE A 664 -126.24 54.18 REMARK 500 HIS A 684 -4.08 74.71 REMARK 500 ILE A 717 57.72 -110.10 REMARK 500 TYR A 777 50.88 -105.10 REMARK 500 VAL A 784 -92.15 -96.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 513 0.11 SIDE CHAIN REMARK 500 ARG A 783 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1358 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 6.09 ANGSTROMS DBREF 8YJN A 1 810 UNP P75793 GRE2_ECOLI 1 810 SEQADV 8YJN MET A -15 UNP P75793 INITIATING METHIONINE SEQADV 8YJN GLY A -14 UNP P75793 EXPRESSION TAG SEQADV 8YJN SER A -13 UNP P75793 EXPRESSION TAG SEQADV 8YJN SER A -12 UNP P75793 EXPRESSION TAG SEQADV 8YJN HIS A -11 UNP P75793 EXPRESSION TAG SEQADV 8YJN HIS A -10 UNP P75793 EXPRESSION TAG SEQADV 8YJN HIS A -9 UNP P75793 EXPRESSION TAG SEQADV 8YJN HIS A -8 UNP P75793 EXPRESSION TAG SEQADV 8YJN HIS A -7 UNP P75793 EXPRESSION TAG SEQADV 8YJN HIS A -6 UNP P75793 EXPRESSION TAG SEQADV 8YJN SER A -5 UNP P75793 EXPRESSION TAG SEQADV 8YJN GLN A -4 UNP P75793 EXPRESSION TAG SEQADV 8YJN SER A -3 UNP P75793 EXPRESSION TAG SEQADV 8YJN GLY A -2 UNP P75793 EXPRESSION TAG SEQADV 8YJN SER A -1 UNP P75793 EXPRESSION TAG SEQADV 8YJN GLY A 0 UNP P75793 EXPRESSION TAG SEQADV 8YJN ALA A 114 UNP P75793 GLU 114 CONFLICT SEQADV 8YJN ALA A 115 UNP P75793 GLU 115 CONFLICT SEQADV 8YJN ALA A 117 UNP P75793 LYS 117 CONFLICT SEQRES 1 A 826 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN SER SEQRES 2 A 826 GLY SER GLY MET THR THR LEU LYS LEU ASP THR LEU SER SEQRES 3 A 826 ASP ARG ILE LYS ALA HIS LYS ASN ALA LEU VAL HIS ILE SEQRES 4 A 826 VAL LYS PRO PRO VAL CYS THR GLU ARG ALA GLN HIS TYR SEQRES 5 A 826 THR GLU MET TYR GLN GLN HIS LEU ASP LYS PRO ILE PRO SEQRES 6 A 826 VAL ARG ARG ALA LEU ALA LEU ALA HIS HIS LEU ALA ASN SEQRES 7 A 826 ARG THR ILE TRP ILE LYS HIS ASP GLU LEU ILE ILE GLY SEQRES 8 A 826 ASN GLN ALA SER GLU VAL ARG ALA ALA PRO ILE PHE PRO SEQRES 9 A 826 GLU TYR THR VAL SER TRP ILE GLU LYS GLU ILE ASP ASP SEQRES 10 A 826 LEU ALA ASP ARG PRO GLY ALA GLY PHE ALA VAL SER ALA SEQRES 11 A 826 ALA ASN ALA ARG VAL LEU HIS GLU VAL CYS PRO TRP TRP SEQRES 12 A 826 ARG GLY GLN THR VAL GLN ASP ARG CYS TYR GLY MET PHE SEQRES 13 A 826 THR ASP GLU GLN LYS GLY LEU LEU ALA THR GLY ILE ILE SEQRES 14 A 826 LYS ALA GLU GLY ASN MET THR SER GLY ASP ALA HIS LEU SEQRES 15 A 826 ALA VAL ASN PHE PRO LEU LEU LEU GLU LYS GLY LEU ASP SEQRES 16 A 826 GLY LEU ARG GLU GLU VAL ALA GLU ARG ARG SER ARG ILE SEQRES 17 A 826 ASN LEU THR VAL LEU GLU ASP LEU HIS GLY GLU GLN PHE SEQRES 18 A 826 LEU LYS ALA ILE ASP ILE VAL LEU VAL ALA VAL SER GLU SEQRES 19 A 826 HIS ILE GLU ARG PHE ALA ALA LEU ALA ARG GLU MET ALA SEQRES 20 A 826 ALA THR GLU THR ARG GLU SER ARG ARG ASP GLU LEU LEU SEQRES 21 A 826 ALA MET ALA GLU ASN CYS ASP LEU ILE ALA HIS GLN PRO SEQRES 22 A 826 PRO GLN THR PHE TRP GLN ALA LEU GLN LEU CYS TYR PHE SEQRES 23 A 826 ILE GLN LEU ILE LEU GLN ILE GLU SER ASN GLY HIS SER SEQRES 24 A 826 VAL SER PHE GLY ARG MET ASP GLN TYR LEU TYR PRO TYR SEQRES 25 A 826 TYR ARG ARG ASP VAL GLU LEU ASN GLN THR LEU ASP ARG SEQRES 26 A 826 GLU HIS ALA ILE GLU MET LEU HIS SER CYS TRP LEU LYS SEQRES 27 A 826 LEU LEU GLU VAL ASN LYS ILE ARG SER GLY SER HIS SER SEQRES 28 A 826 LYS ALA SER ALA GLY SER PRO LEU TYR GLN ASN VAL THR SEQRES 29 A 826 ILE GLY GLY GLN ASN LEU VAL ASP GLY GLN PRO MET ASP SEQRES 30 A 826 ALA VAL ASN PRO LEU SER TYR ALA ILE LEU GLU SER CYS SEQRES 31 A 826 GLY ARG LEU ARG SER THR GLN PRO ASN LEU SER VAL ARG SEQRES 32 A 826 TYR HIS ALA GLY MET SER ASN ASP PHE LEU ASP ALA CYS SEQRES 33 A 826 VAL GLN VAL ILE ARG CYS GLY PHE GLY MET PRO ALA PHE SEQRES 34 A 826 ASN ASN ASP GLU ILE VAL ILE PRO GLU PHE ILE LYS LEU SEQRES 35 A 826 GLY ILE GLU PRO GLN ASP ALA TYR ASP TYR ALA ALA ILE SEQRES 36 A 826 GLY CYS ILE GLU THR ALA VAL GLY GLY LYS TRP GLY TYR SEQRES 37 A 826 ARG CYS THR GLY MET SER PHE ILE ASN PHE ALA ARG VAL SEQRES 38 A 826 MET LEU ALA ALA LEU GLU GLY GLY HIS ASP ALA THR SER SEQRES 39 A 826 GLY LYS VAL PHE LEU PRO GLN GLU LYS ALA LEU SER ALA SEQRES 40 A 826 GLY ASN PHE ASN ASN PHE ASP GLU VAL MET ASP ALA TRP SEQRES 41 A 826 ASP THR GLN ILE ARG TYR TYR THR ARG LYS SER ILE GLU SEQRES 42 A 826 ILE GLU TYR VAL VAL ASP THR MET LEU GLU GLU ASN VAL SEQRES 43 A 826 HIS ASP ILE LEU CYS SER ALA LEU VAL ASP ASP CYS ILE SEQRES 44 A 826 GLU ARG ALA LYS SER ILE LYS GLN GLY GLY ALA LYS TYR SEQRES 45 A 826 ASP TRP VAL SER GLY LEU GLN VAL GLY ILE ALA ASN LEU SEQRES 46 A 826 GLY ASN SER LEU ALA ALA VAL LYS LYS LEU VAL PHE GLU SEQRES 47 A 826 GLN GLY ALA ILE GLY GLN GLN GLN LEU ALA ALA ALA LEU SEQRES 48 A 826 ALA ASP ASP PHE ASP GLY LEU THR HIS GLU GLN LEU ARG SEQRES 49 A 826 GLN ARG LEU ILE ASN GLY ALA PRO LYS TYR GLY ASN ASP SEQRES 50 A 826 ASP ASP THR VAL ASP THR LEU LEU ALA ARG ALA TYR GLN SEQRES 51 A 826 THR TYR ILE ASP GLU LEU LYS GLN TYR HIS ASN PRO ARG SEQRES 52 A 826 TYR GLY ARG GLY PRO VAL GLY GLY ASN TYR TYR ALA GLY SEQRES 53 A 826 THR SER SER ILE SER ALA ASN VAL PRO PHE GLY ALA GLN SEQRES 54 A 826 THR MET ALA THR PRO ASP GLY ARG LYS ALA HIS THR PRO SEQRES 55 A 826 LEU ALA GLU GLY ALA SER PRO ALA SER GLY THR ASP HIS SEQRES 56 A 826 LEU GLY PRO THR ALA VAL ILE GLY SER VAL GLY LYS LEU SEQRES 57 A 826 PRO THR ALA ALA ILE LEU GLY GLY VAL LEU LEU ASN GLN SEQRES 58 A 826 LYS LEU ASN PRO ALA THR LEU GLU ASN GLU SER ASP LYS SEQRES 59 A 826 GLN LYS LEU MET ILE LEU LEU ARG THR PHE PHE GLU VAL SEQRES 60 A 826 HIS LYS GLY TRP HIS ILE GLN TYR ASN ILE VAL SER ARG SEQRES 61 A 826 GLU THR LEU LEU ASP ALA LYS LYS HIS PRO ASP GLN TYR SEQRES 62 A 826 ARG ASP LEU VAL VAL ARG VAL ALA GLY TYR SER ALA PHE SEQRES 63 A 826 PHE THR ALA LEU SER PRO ASP ALA GLN ASP ASP ILE ILE SEQRES 64 A 826 ALA ARG THR GLU HIS MET LEU HET GOL A 901 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *359(H2 O) HELIX 1 AA1 SER A 10 HIS A 22 1 13 HELIX 2 AA2 THR A 30 HIS A 43 1 14 HELIX 3 AA3 PRO A 47 ARG A 63 1 17 HELIX 4 AA4 VAL A 92 ILE A 99 1 8 HELIX 5 AA5 ASP A 100 LEU A 102 5 3 HELIX 6 AA6 SER A 113 ARG A 128 1 16 HELIX 7 AA7 THR A 131 GLY A 138 1 8 HELIX 8 AA8 THR A 141 GLY A 151 1 11 HELIX 9 AA9 ALA A 155 THR A 160 1 6 HELIX 10 AB1 ASN A 169 SER A 190 1 22 HELIX 11 AB2 VAL A 196 ALA A 232 1 37 HELIX 12 AB3 ARG A 236 ALA A 254 1 19 HELIX 13 AB4 THR A 260 SER A 279 1 20 HELIX 14 AB5 ARG A 288 LEU A 293 1 6 HELIX 15 AB6 LEU A 293 GLU A 302 1 10 HELIX 16 AB7 ASP A 308 VAL A 326 1 19 HELIX 17 AB8 SER A 331 ALA A 337 1 7 HELIX 18 AB9 ASN A 364 ARG A 378 1 15 HELIX 19 AC1 SER A 393 CYS A 406 1 14 HELIX 20 AC2 ASP A 416 GLY A 427 1 12 HELIX 21 AC3 GLU A 429 ASP A 435 1 7 HELIX 22 AC4 PHE A 462 LEU A 470 1 9 HELIX 23 AC5 ALA A 488 GLY A 492 5 5 HELIX 24 AC6 ASN A 496 VAL A 530 1 35 HELIX 25 AC7 ASP A 532 LEU A 538 1 7 HELIX 26 AC8 ASP A 541 ALA A 546 1 6 HELIX 27 AC9 SER A 548 GLY A 552 5 5 HELIX 28 AD1 GLY A 565 VAL A 580 1 16 HELIX 29 AD2 GLY A 587 ASP A 597 1 11 HELIX 30 AD3 ASP A 600 GLY A 614 1 15 HELIX 31 AD4 ASP A 622 LYS A 641 1 20 HELIX 32 AD5 ALA A 666 GLN A 673 1 8 HELIX 33 AD6 GLY A 701 LYS A 711 1 11 HELIX 34 AD7 LEU A 712 ILE A 717 5 6 HELIX 35 AD8 ASN A 728 GLU A 733 5 6 HELIX 36 AD9 ASN A 734 VAL A 751 1 18 HELIX 37 AE1 SER A 763 HIS A 773 1 11 HELIX 38 AE2 THR A 792 LEU A 794 5 3 HELIX 39 AE3 SER A 795 ALA A 804 1 10 SHEET 1 AA1 3 ILE A 153 LYS A 154 0 SHEET 2 AA1 3 PHE A 459 ASN A 461 -1 O PHE A 459 N LYS A 154 SHEET 3 AA1 3 LEU A 562 VAL A 564 1 O VAL A 564 N ILE A 460 SHEET 1 AA2 5 ASN A 346 GLY A 350 0 SHEET 2 AA2 5 ASN A 383 TYR A 388 1 O SER A 385 N VAL A 347 SHEET 3 AA2 5 ALA A 412 ASN A 415 1 O ASN A 414 N TYR A 388 SHEET 4 AA2 5 HIS A 756 ILE A 761 -1 O ILE A 757 N PHE A 413 SHEET 5 AA2 5 ASN A 724 LEU A 727 1 N LEU A 727 O ASN A 760 SHEET 1 AA3 2 GLN A 352 VAL A 355 0 SHEET 2 AA3 2 GLN A 358 ASP A 361 -1 O GLN A 358 N VAL A 355 SHEET 1 AA4 2 ALA A 437 ILE A 439 0 SHEET 2 AA4 2 GLU A 443 ALA A 445 -1 O ALA A 445 N ALA A 437 SHEET 1 AA5 2 TYR A 556 SER A 560 0 SHEET 2 AA5 2 VAL A 653 TYR A 658 1 O VAL A 653 N ASP A 557 SHEET 1 AA6 2 VAL A 781 ARG A 783 0 SHEET 2 AA6 2 SER A 788 PHE A 790 -1 O ALA A 789 N VAL A 782 CISPEP 1 GLN A 381 PRO A 382 0 3.81 CISPEP 2 MET A 410 PRO A 411 0 -3.63 CISPEP 3 ASP A 540 ASP A 541 0 -0.72 CRYST1 114.926 207.040 210.555 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008701 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004749 0.00000