data_8YK7 # _entry.id 8YK7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YK7 pdb_00008yk7 10.2210/pdb8yk7/pdb WWPDB D_1300045847 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-09-11 2 'Structure model' 1 1 2024-09-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YK7 _pdbx_database_status.recvd_initial_deposition_date 2024-03-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email kangxue@nbu.edu.cn _pdbx_contact_author.name_first Xue _pdbx_contact_author.name_last Kang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2011-5580 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xue, Y.' 1 ? 'Kang, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_id_ASTM ACSFEN _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-230X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 80 _citation.language ? _citation.page_first 228 _citation.page_last 233 _citation.title 'Crystal structure of the Rib domain of the cell-wall-anchored surface protein from Limosilactobacillus reuteri.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053230X24007970 _citation.pdbx_database_id_PubMed 39196706 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xue, Y.' 1 ? primary 'Wu, Z.' 2 ? primary 'Kang, X.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'YSIRK signal domain/LPXTG anchor domain surface protein' 8526.283 1 ? ? 'Rib domain' ? 2 non-polymer syn 'COPPER (II) ION' 63.546 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 5 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SVTTDADKYTPEGQDVSTKTGVVPNPAEGIKNKSDLPDGTKYTWKDTPDISTEGNKPAVVVVTYPDGSKDEVPVTIHVTN _entity_poly.pdbx_seq_one_letter_code_can SVTTDADKYTPEGQDVSTKTGVVPNPAEGIKNKSDLPDGTKYTWKDTPDISTEGNKPAVVVVTYPDGSKDEVPVTIHVTN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 'SODIUM ION' NA 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 VAL n 1 3 THR n 1 4 THR n 1 5 ASP n 1 6 ALA n 1 7 ASP n 1 8 LYS n 1 9 TYR n 1 10 THR n 1 11 PRO n 1 12 GLU n 1 13 GLY n 1 14 GLN n 1 15 ASP n 1 16 VAL n 1 17 SER n 1 18 THR n 1 19 LYS n 1 20 THR n 1 21 GLY n 1 22 VAL n 1 23 VAL n 1 24 PRO n 1 25 ASN n 1 26 PRO n 1 27 ALA n 1 28 GLU n 1 29 GLY n 1 30 ILE n 1 31 LYS n 1 32 ASN n 1 33 LYS n 1 34 SER n 1 35 ASP n 1 36 LEU n 1 37 PRO n 1 38 ASP n 1 39 GLY n 1 40 THR n 1 41 LYS n 1 42 TYR n 1 43 THR n 1 44 TRP n 1 45 LYS n 1 46 ASP n 1 47 THR n 1 48 PRO n 1 49 ASP n 1 50 ILE n 1 51 SER n 1 52 THR n 1 53 GLU n 1 54 GLY n 1 55 ASN n 1 56 LYS n 1 57 PRO n 1 58 ALA n 1 59 VAL n 1 60 VAL n 1 61 VAL n 1 62 VAL n 1 63 THR n 1 64 TYR n 1 65 PRO n 1 66 ASP n 1 67 GLY n 1 68 SER n 1 69 LYS n 1 70 ASP n 1 71 GLU n 1 72 VAL n 1 73 PRO n 1 74 VAL n 1 75 THR n 1 76 ILE n 1 77 HIS n 1 78 VAL n 1 79 THR n 1 80 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 80 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DB325_02015 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Limosilactobacillus reuteri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1598 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1189 1189 SER SER A . n A 1 2 VAL 2 1190 1190 VAL VAL A . n A 1 3 THR 3 1191 1191 THR THR A . n A 1 4 THR 4 1192 1192 THR THR A . n A 1 5 ASP 5 1193 1193 ASP ASP A . n A 1 6 ALA 6 1194 1194 ALA ALA A . n A 1 7 ASP 7 1195 1195 ASP ASP A . n A 1 8 LYS 8 1196 1196 LYS LYS A . n A 1 9 TYR 9 1197 1197 TYR TYR A . n A 1 10 THR 10 1198 1198 THR THR A . n A 1 11 PRO 11 1199 1199 PRO PRO A . n A 1 12 GLU 12 1200 1200 GLU GLU A . n A 1 13 GLY 13 1201 1201 GLY GLY A . n A 1 14 GLN 14 1202 1202 GLN GLN A . n A 1 15 ASP 15 1203 1203 ASP ASP A . n A 1 16 VAL 16 1204 1204 VAL VAL A . n A 1 17 SER 17 1205 1205 SER SER A . n A 1 18 THR 18 1206 1206 THR THR A . n A 1 19 LYS 19 1207 1207 LYS LYS A . n A 1 20 THR 20 1208 1208 THR THR A . n A 1 21 GLY 21 1209 1209 GLY GLY A . n A 1 22 VAL 22 1210 1210 VAL VAL A . n A 1 23 VAL 23 1211 1211 VAL VAL A . n A 1 24 PRO 24 1212 1212 PRO PRO A . n A 1 25 ASN 25 1213 1213 ASN ASN A . n A 1 26 PRO 26 1214 1214 PRO PRO A . n A 1 27 ALA 27 1215 1215 ALA ALA A . n A 1 28 GLU 28 1216 1216 GLU GLU A . n A 1 29 GLY 29 1217 1217 GLY GLY A . n A 1 30 ILE 30 1218 1218 ILE ILE A . n A 1 31 LYS 31 1219 1219 LYS LYS A . n A 1 32 ASN 32 1220 1220 ASN ASN A . n A 1 33 LYS 33 1221 1221 LYS LYS A . n A 1 34 SER 34 1222 1222 SER SER A . n A 1 35 ASP 35 1223 1223 ASP ASP A . n A 1 36 LEU 36 1224 1224 LEU LEU A . n A 1 37 PRO 37 1225 1225 PRO PRO A . n A 1 38 ASP 38 1226 1226 ASP ASP A . n A 1 39 GLY 39 1227 1227 GLY GLY A . n A 1 40 THR 40 1228 1228 THR THR A . n A 1 41 LYS 41 1229 1229 LYS LYS A . n A 1 42 TYR 42 1230 1230 TYR TYR A . n A 1 43 THR 43 1231 1231 THR THR A . n A 1 44 TRP 44 1232 1232 TRP TRP A . n A 1 45 LYS 45 1233 1233 LYS LYS A . n A 1 46 ASP 46 1234 1234 ASP ASP A . n A 1 47 THR 47 1235 1235 THR THR A . n A 1 48 PRO 48 1236 1236 PRO PRO A . n A 1 49 ASP 49 1237 1237 ASP ASP A . n A 1 50 ILE 50 1238 1238 ILE ILE A . n A 1 51 SER 51 1239 1239 SER SER A . n A 1 52 THR 52 1240 1240 THR THR A . n A 1 53 GLU 53 1241 1241 GLU GLU A . n A 1 54 GLY 54 1242 1242 GLY GLY A . n A 1 55 ASN 55 1243 1243 ASN ASN A . n A 1 56 LYS 56 1244 1244 LYS LYS A . n A 1 57 PRO 57 1245 1245 PRO PRO A . n A 1 58 ALA 58 1246 1246 ALA ALA A . n A 1 59 VAL 59 1247 1247 VAL VAL A . n A 1 60 VAL 60 1248 1248 VAL VAL A . n A 1 61 VAL 61 1249 1249 VAL VAL A . n A 1 62 VAL 62 1250 1250 VAL VAL A . n A 1 63 THR 63 1251 1251 THR THR A . n A 1 64 TYR 64 1252 1252 TYR TYR A . n A 1 65 PRO 65 1253 1253 PRO PRO A . n A 1 66 ASP 66 1254 1254 ASP ASP A . n A 1 67 GLY 67 1255 1255 GLY GLY A . n A 1 68 SER 68 1256 1256 SER SER A . n A 1 69 LYS 69 1257 1257 LYS LYS A . n A 1 70 ASP 70 1258 1258 ASP ASP A . n A 1 71 GLU 71 1259 1259 GLU GLU A . n A 1 72 VAL 72 1260 1260 VAL VAL A . n A 1 73 PRO 73 1261 1261 PRO PRO A . n A 1 74 VAL 74 1262 1262 VAL VAL A . n A 1 75 THR 75 1263 1263 THR THR A . n A 1 76 ILE 76 1264 1264 ILE ILE A . n A 1 77 HIS 77 1265 1265 HIS HIS A . n A 1 78 VAL 78 1266 1266 VAL VAL A . n A 1 79 THR 79 1267 1267 THR THR A . n A 1 80 ASN 80 1268 1268 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU 1 1301 1 CU CU A . C 2 CU 1 1302 2 CU CU A . D 3 NA 1 1303 1 NA NA A . E 4 EDO 1 1304 1 EDO EDO A . F 4 EDO 1 1305 2 EDO EDO A . G 5 HOH 1 1401 125 HOH HOH A . G 5 HOH 2 1402 92 HOH HOH A . G 5 HOH 3 1403 66 HOH HOH A . G 5 HOH 4 1404 122 HOH HOH A . G 5 HOH 5 1405 41 HOH HOH A . G 5 HOH 6 1406 60 HOH HOH A . G 5 HOH 7 1407 94 HOH HOH A . G 5 HOH 8 1408 62 HOH HOH A . G 5 HOH 9 1409 33 HOH HOH A . G 5 HOH 10 1410 49 HOH HOH A . G 5 HOH 11 1411 51 HOH HOH A . G 5 HOH 12 1412 95 HOH HOH A . G 5 HOH 13 1413 135 HOH HOH A . G 5 HOH 14 1414 72 HOH HOH A . G 5 HOH 15 1415 48 HOH HOH A . G 5 HOH 16 1416 16 HOH HOH A . G 5 HOH 17 1417 45 HOH HOH A . G 5 HOH 18 1418 93 HOH HOH A . G 5 HOH 19 1419 22 HOH HOH A . G 5 HOH 20 1420 63 HOH HOH A . G 5 HOH 21 1421 38 HOH HOH A . G 5 HOH 22 1422 8 HOH HOH A . G 5 HOH 23 1423 7 HOH HOH A . G 5 HOH 24 1424 26 HOH HOH A . G 5 HOH 25 1425 50 HOH HOH A . G 5 HOH 26 1426 55 HOH HOH A . G 5 HOH 27 1427 130 HOH HOH A . G 5 HOH 28 1428 69 HOH HOH A . G 5 HOH 29 1429 90 HOH HOH A . G 5 HOH 30 1430 17 HOH HOH A . G 5 HOH 31 1431 68 HOH HOH A . G 5 HOH 32 1432 25 HOH HOH A . G 5 HOH 33 1433 11 HOH HOH A . G 5 HOH 34 1434 120 HOH HOH A . G 5 HOH 35 1435 83 HOH HOH A . G 5 HOH 36 1436 35 HOH HOH A . G 5 HOH 37 1437 65 HOH HOH A . G 5 HOH 38 1438 1 HOH HOH A . G 5 HOH 39 1439 36 HOH HOH A . G 5 HOH 40 1440 91 HOH HOH A . G 5 HOH 41 1441 44 HOH HOH A . G 5 HOH 42 1442 47 HOH HOH A . G 5 HOH 43 1443 37 HOH HOH A . G 5 HOH 44 1444 98 HOH HOH A . G 5 HOH 45 1445 12 HOH HOH A . G 5 HOH 46 1446 9 HOH HOH A . G 5 HOH 47 1447 99 HOH HOH A . G 5 HOH 48 1448 19 HOH HOH A . G 5 HOH 49 1449 30 HOH HOH A . G 5 HOH 50 1450 136 HOH HOH A . G 5 HOH 51 1451 106 HOH HOH A . G 5 HOH 52 1452 73 HOH HOH A . G 5 HOH 53 1453 56 HOH HOH A . G 5 HOH 54 1454 96 HOH HOH A . G 5 HOH 55 1455 112 HOH HOH A . G 5 HOH 56 1456 77 HOH HOH A . G 5 HOH 57 1457 86 HOH HOH A . G 5 HOH 58 1458 20 HOH HOH A . G 5 HOH 59 1459 87 HOH HOH A . G 5 HOH 60 1460 2 HOH HOH A . G 5 HOH 61 1461 113 HOH HOH A . G 5 HOH 62 1462 88 HOH HOH A . G 5 HOH 63 1463 31 HOH HOH A . G 5 HOH 64 1464 57 HOH HOH A . G 5 HOH 65 1465 58 HOH HOH A . G 5 HOH 66 1466 3 HOH HOH A . G 5 HOH 67 1467 5 HOH HOH A . G 5 HOH 68 1468 53 HOH HOH A . G 5 HOH 69 1469 34 HOH HOH A . G 5 HOH 70 1470 71 HOH HOH A . G 5 HOH 71 1471 61 HOH HOH A . G 5 HOH 72 1472 54 HOH HOH A . G 5 HOH 73 1473 15 HOH HOH A . G 5 HOH 74 1474 42 HOH HOH A . G 5 HOH 75 1475 18 HOH HOH A . G 5 HOH 76 1476 27 HOH HOH A . G 5 HOH 77 1477 13 HOH HOH A . G 5 HOH 78 1478 23 HOH HOH A . G 5 HOH 79 1479 10 HOH HOH A . G 5 HOH 80 1480 52 HOH HOH A . G 5 HOH 81 1481 43 HOH HOH A . G 5 HOH 82 1482 14 HOH HOH A . G 5 HOH 83 1483 75 HOH HOH A . G 5 HOH 84 1484 89 HOH HOH A . G 5 HOH 85 1485 28 HOH HOH A . G 5 HOH 86 1486 39 HOH HOH A . G 5 HOH 87 1487 29 HOH HOH A . G 5 HOH 88 1488 40 HOH HOH A . G 5 HOH 89 1489 32 HOH HOH A . G 5 HOH 90 1490 21 HOH HOH A . G 5 HOH 91 1491 132 HOH HOH A . G 5 HOH 92 1492 111 HOH HOH A . G 5 HOH 93 1493 24 HOH HOH A . G 5 HOH 94 1494 70 HOH HOH A . G 5 HOH 95 1495 97 HOH HOH A . G 5 HOH 96 1496 102 HOH HOH A . G 5 HOH 97 1497 78 HOH HOH A . G 5 HOH 98 1498 107 HOH HOH A . G 5 HOH 99 1499 105 HOH HOH A . G 5 HOH 100 1500 124 HOH HOH A . G 5 HOH 101 1501 129 HOH HOH A . G 5 HOH 102 1502 116 HOH HOH A . G 5 HOH 103 1503 115 HOH HOH A . G 5 HOH 104 1504 109 HOH HOH A . G 5 HOH 105 1505 46 HOH HOH A . G 5 HOH 106 1506 4 HOH HOH A . G 5 HOH 107 1507 101 HOH HOH A . G 5 HOH 108 1508 114 HOH HOH A . G 5 HOH 109 1509 110 HOH HOH A . G 5 HOH 110 1510 104 HOH HOH A . G 5 HOH 111 1511 64 HOH HOH A . G 5 HOH 112 1512 67 HOH HOH A . G 5 HOH 113 1513 103 HOH HOH A . G 5 HOH 114 1514 79 HOH HOH A . G 5 HOH 115 1515 133 HOH HOH A . G 5 HOH 116 1516 76 HOH HOH A . G 5 HOH 117 1517 108 HOH HOH A . G 5 HOH 118 1518 134 HOH HOH A . G 5 HOH 119 1519 82 HOH HOH A . G 5 HOH 120 1520 80 HOH HOH A . G 5 HOH 121 1521 85 HOH HOH A . G 5 HOH 122 1522 74 HOH HOH A . G 5 HOH 123 1523 84 HOH HOH A . G 5 HOH 124 1524 81 HOH HOH A . G 5 HOH 125 1525 59 HOH HOH A . G 5 HOH 126 1526 131 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 1196 ? CG ? A LYS 8 CG 2 1 Y 1 A LYS 1196 ? CD ? A LYS 8 CD 3 1 Y 1 A LYS 1196 ? CE ? A LYS 8 CE 4 1 Y 1 A LYS 1196 ? NZ ? A LYS 8 NZ 5 1 Y 1 A LYS 1207 ? NZ ? A LYS 19 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0352 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SAINT ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? SADABS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8YK7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 76.274 _cell.length_a_esd ? _cell.length_b 76.274 _cell.length_b_esd ? _cell.length_c 23.326 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YK7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01M ZnSO4, 0.1M MES pH 6.5, 20% PEGMME 550, protein is premixed with 3mM CuCl2' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'Bruker PHOTON II' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-09-24 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'SEALED TUBE' _diffrn_source.target ? _diffrn_source.type 'BRUKER D8 QUEST' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8YK7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.35 _reflns.d_resolution_low 19.91 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17478 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.45 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3451 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.04 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.04 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.14 _refine.B_iso_max ? _refine.B_iso_mean 10.356 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YK7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.35 _refine.ls_d_res_low 19.91 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16600 _refine.ls_number_reflns_R_free 851 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.61 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.12901 _refine.ls_R_factor_R_free 0.16725 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.12700 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.048 _refine.pdbx_overall_ESU_R_Free 0.049 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.747 _refine.overall_SU_ML 0.031 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 19.91 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 732 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 595 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.012 647 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 574 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.438 1.688 893 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.476 1.570 1359 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.569 5.000 87 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 9.584 10.000 92 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.071 0.200 106 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 728 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 96 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.579 0.930 333 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.596 35.888 333 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.065 1.410 419 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.073 1.663 420 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.814 1.168 314 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.100 ? 315 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.088 1.662 473 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.061 ? 804 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 3.181 ? 739 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 2.733 3.000 647 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.35 _refine_ls_shell.d_res_low 1.382 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_R_work 1219 _refine_ls_shell.percent_reflns_obs 99.54 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.224 # _struct.entry_id 8YK7 _struct.title 'Structure of Rib domain from surface adhesin of Limosilactobacillus reuteri' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YK7 _struct_keywords.text 'cell surface protein, bacterial adhesin, rib domain, ig-like domain, tandem-repeat domain, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A2T5Q5G6_LIMRT _struct_ref.pdbx_db_accession A0A2T5Q5G6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VTTDADKYTPEGQDVSTKTGVVPNPAEGIKNKSDLPDGTKYTWKDTPDISTEGNKPAVVVVTYPDGSKDEVPVTIHVTN _struct_ref.pdbx_align_begin 1190 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8YK7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 80 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A2T5Q5G6 _struct_ref_seq.db_align_beg 1190 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1268 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1190 _struct_ref_seq.pdbx_auth_seq_align_end 1268 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 8YK7 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A0A2T5Q5G6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1189 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 230 ? 1 MORE -16 ? 1 'SSA (A^2)' 4840 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 4 ? TYR A 9 ? THR A 1192 TYR A 1197 1 ? 6 HELX_P HELX_P2 AA2 ASN A 25 ? ILE A 30 ? ASN A 1213 ILE A 1218 5 ? 6 HELX_P HELX_P3 AA3 ASN A 32 ? LEU A 36 ? ASN A 1220 LEU A 1224 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 1 N ? ? ? 1_555 B CU . CU ? ? A SER 1189 A CU 1301 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc2 metalc ? ? A SER 1 O ? ? ? 1_555 B CU . CU ? ? A SER 1189 A CU 1301 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc3 metalc ? ? A ALA 6 O ? ? ? 1_555 D NA . NA ? ? A ALA 1194 A NA 1303 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc4 metalc ? ? A TYR 9 O ? ? ? 1_555 D NA . NA ? ? A TYR 1197 A NA 1303 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc5 metalc ? ? A ASP 15 OD2 ? ? ? 1_555 B CU . CU ? ? A ASP 1203 A CU 1301 5_553 ? ? ? ? ? ? ? 1.903 ? ? metalc6 metalc ? ? A GLU 53 OE2 ? ? ? 1_555 C CU . CU ? ? A GLU 1241 A CU 1302 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc7 metalc ? ? A ASP 70 OD1 ? ? ? 1_555 D NA . NA ? ? A ASP 1258 A NA 1303 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc8 metalc ? ? A ASP 70 OD2 ? ? ? 1_555 D NA . NA ? ? A ASP 1258 A NA 1303 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc9 metalc ? ? A HIS 77 NE2 ? ? ? 1_555 B CU . CU ? ? A HIS 1265 A CU 1301 5_553 ? ? ? ? ? ? ? 1.964 ? ? metalc10 metalc ? ? B CU . CU ? ? ? 1_555 G HOH . O ? ? A CU 1301 A HOH 1466 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc11 metalc ? ? C CU . CU ? ? ? 1_555 G HOH . O ? ? A CU 1302 A HOH 1438 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc12 metalc ? ? C CU . CU ? ? ? 1_555 G HOH . O ? ? A CU 1302 A HOH 1455 1_554 ? ? ? ? ? ? ? 2.030 ? ? metalc13 metalc ? ? C CU . CU ? ? ? 1_555 G HOH . O ? ? A CU 1302 A HOH 1460 1_554 ? ? ? ? ? ? ? 2.027 ? ? metalc14 metalc ? ? C CU . CU ? ? ? 1_555 G HOH . O ? ? A CU 1302 A HOH 1461 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc15 metalc ? ? C CU . CU ? ? ? 1_555 G HOH . O ? ? A CU 1302 A HOH 1513 1_554 ? ? ? ? ? ? ? 2.065 ? ? metalc16 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 1303 A HOH 1467 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc17 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 1303 A HOH 1506 1_555 ? ? ? ? ? ? ? 2.356 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 O ? A SER 1 ? A SER 1189 ? 1_555 83.0 ? 2 N ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 OD2 ? A ASP 15 ? A ASP 1203 ? 1_555 95.8 ? 3 O ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 OD2 ? A ASP 15 ? A ASP 1203 ? 1_555 59.5 ? 4 N ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 NE2 ? A HIS 77 ? A HIS 1265 ? 1_555 94.3 ? 5 O ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 NE2 ? A HIS 77 ? A HIS 1265 ? 1_555 56.5 ? 6 OD2 ? A ASP 15 ? A ASP 1203 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 NE2 ? A HIS 77 ? A HIS 1265 ? 1_555 3.1 ? 7 N ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 O ? G HOH . ? A HOH 1466 ? 1_555 96.9 ? 8 O ? A SER 1 ? A SER 1189 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 O ? G HOH . ? A HOH 1466 ? 1_555 93.4 ? 9 OD2 ? A ASP 15 ? A ASP 1203 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 O ? G HOH . ? A HOH 1466 ? 1_555 34.2 ? 10 NE2 ? A HIS 77 ? A HIS 1265 ? 1_555 CU ? B CU . ? A CU 1301 ? 1_555 O ? G HOH . ? A HOH 1466 ? 1_555 37.1 ? 11 O ? A ALA 6 ? A ALA 1194 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? A TYR 9 ? A TYR 1197 ? 1_555 97.5 ? 12 O ? A ALA 6 ? A ALA 1194 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 OD1 ? A ASP 70 ? A ASP 1258 ? 1_555 87.7 ? 13 O ? A TYR 9 ? A TYR 1197 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 OD1 ? A ASP 70 ? A ASP 1258 ? 1_555 140.9 ? 14 O ? A ALA 6 ? A ALA 1194 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 OD2 ? A ASP 70 ? A ASP 1258 ? 1_555 94.3 ? 15 O ? A TYR 9 ? A TYR 1197 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 OD2 ? A ASP 70 ? A ASP 1258 ? 1_555 90.6 ? 16 OD1 ? A ASP 70 ? A ASP 1258 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 OD2 ? A ASP 70 ? A ASP 1258 ? 1_555 50.3 ? 17 O ? A ALA 6 ? A ALA 1194 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1467 ? 1_555 90.3 ? 18 O ? A TYR 9 ? A TYR 1197 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1467 ? 1_555 72.8 ? 19 OD1 ? A ASP 70 ? A ASP 1258 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1467 ? 1_555 146.2 ? 20 OD2 ? A ASP 70 ? A ASP 1258 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1467 ? 1_555 163.3 ? 21 O ? A ALA 6 ? A ALA 1194 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1506 ? 1_555 156.6 ? 22 O ? A TYR 9 ? A TYR 1197 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1506 ? 1_555 102.4 ? 23 OD1 ? A ASP 70 ? A ASP 1258 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1506 ? 1_555 84.6 ? 24 OD2 ? A ASP 70 ? A ASP 1258 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1506 ? 1_555 97.6 ? 25 O ? G HOH . ? A HOH 1467 ? 1_555 NA ? D NA . ? A NA 1303 ? 1_555 O ? G HOH . ? A HOH 1506 ? 1_555 84.1 ? 26 OE2 ? A GLU 53 ? A GLU 1241 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1438 ? 1_555 86.2 ? 27 OE2 ? A GLU 53 ? A GLU 1241 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1455 ? 1_554 96.8 ? 28 O ? G HOH . ? A HOH 1438 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1455 ? 1_554 172.5 ? 29 OE2 ? A GLU 53 ? A GLU 1241 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1460 ? 1_554 96.5 ? 30 O ? G HOH . ? A HOH 1438 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1460 ? 1_554 92.8 ? 31 O ? G HOH . ? A HOH 1455 ? 1_554 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1460 ? 1_554 93.7 ? 32 OE2 ? A GLU 53 ? A GLU 1241 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1461 ? 1_555 83.2 ? 33 O ? G HOH . ? A HOH 1438 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1461 ? 1_555 88.0 ? 34 O ? G HOH . ? A HOH 1455 ? 1_554 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1461 ? 1_555 85.4 ? 35 O ? G HOH . ? A HOH 1460 ? 1_554 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1461 ? 1_555 179.0 ? 36 OE2 ? A GLU 53 ? A GLU 1241 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1513 ? 1_554 170.7 ? 37 O ? G HOH . ? A HOH 1438 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1513 ? 1_554 87.6 ? 38 O ? G HOH . ? A HOH 1455 ? 1_554 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1513 ? 1_554 88.6 ? 39 O ? G HOH . ? A HOH 1460 ? 1_554 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1513 ? 1_554 90.7 ? 40 O ? G HOH . ? A HOH 1461 ? 1_555 CU ? C CU . ? A CU 1302 ? 1_555 O ? G HOH . ? A HOH 1513 ? 1_554 89.7 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 16 ? LYS A 19 ? VAL A 1204 LYS A 1207 AA1 2 LYS A 69 ? THR A 79 ? LYS A 1257 THR A 1267 AA1 3 GLY A 54 ? THR A 63 ? GLY A 1242 THR A 1251 AA1 4 LYS A 41 ? TRP A 44 ? LYS A 1229 TRP A 1232 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 16 ? N VAL A 1204 O HIS A 77 ? O HIS A 1265 AA1 2 3 O ILE A 76 ? O ILE A 1264 N LYS A 56 ? N LYS A 1244 AA1 3 4 O VAL A 61 ? O VAL A 1249 N THR A 43 ? N THR A 1231 # _pdbx_entry_details.entry_id 8YK7 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -5.545 _pdbx_refine_tls.origin_y 30.229 _pdbx_refine_tls.origin_z -2.459 _pdbx_refine_tls.T[1][1] 0.0127 _pdbx_refine_tls.T[2][2] 0.0280 _pdbx_refine_tls.T[3][3] 0.0103 _pdbx_refine_tls.T[1][2] -0.0050 _pdbx_refine_tls.T[1][3] -0.0050 _pdbx_refine_tls.T[2][3] 0.0025 _pdbx_refine_tls.L[1][1] 1.0265 _pdbx_refine_tls.L[2][2] 0.2820 _pdbx_refine_tls.L[3][3] 0.5288 _pdbx_refine_tls.L[1][2] 0.4389 _pdbx_refine_tls.L[1][3] -0.5157 _pdbx_refine_tls.L[2][3] -0.2670 _pdbx_refine_tls.S[1][1] 0.0243 _pdbx_refine_tls.S[2][2] -0.0273 _pdbx_refine_tls.S[3][3] 0.0030 _pdbx_refine_tls.S[1][2] 0.0381 _pdbx_refine_tls.S[1][3] 0.0162 _pdbx_refine_tls.S[2][3] -0.0118 _pdbx_refine_tls.S[2][1] 0.0251 _pdbx_refine_tls.S[3][1] 0.0259 _pdbx_refine_tls.S[3][2] -0.0124 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1401 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 1525 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CU CU CU N N 47 EDO C1 C N N 48 EDO O1 O N N 49 EDO C2 C N N 50 EDO O2 O N N 51 EDO H11 H N N 52 EDO H12 H N N 53 EDO HO1 H N N 54 EDO H21 H N N 55 EDO H22 H N N 56 EDO HO2 H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLU N N N N 78 GLU CA C N S 79 GLU C C N N 80 GLU O O N N 81 GLU CB C N N 82 GLU CG C N N 83 GLU CD C N N 84 GLU OE1 O N N 85 GLU OE2 O N N 86 GLU OXT O N N 87 GLU H H N N 88 GLU H2 H N N 89 GLU HA H N N 90 GLU HB2 H N N 91 GLU HB3 H N N 92 GLU HG2 H N N 93 GLU HG3 H N N 94 GLU HE2 H N N 95 GLU HXT H N N 96 GLY N N N N 97 GLY CA C N N 98 GLY C C N N 99 GLY O O N N 100 GLY OXT O N N 101 GLY H H N N 102 GLY H2 H N N 103 GLY HA2 H N N 104 GLY HA3 H N N 105 GLY HXT H N N 106 HIS N N N N 107 HIS CA C N S 108 HIS C C N N 109 HIS O O N N 110 HIS CB C N N 111 HIS CG C Y N 112 HIS ND1 N Y N 113 HIS CD2 C Y N 114 HIS CE1 C Y N 115 HIS NE2 N Y N 116 HIS OXT O N N 117 HIS H H N N 118 HIS H2 H N N 119 HIS HA H N N 120 HIS HB2 H N N 121 HIS HB3 H N N 122 HIS HD1 H N N 123 HIS HD2 H N N 124 HIS HE1 H N N 125 HIS HE2 H N N 126 HIS HXT H N N 127 HOH O O N N 128 HOH H1 H N N 129 HOH H2 H N N 130 ILE N N N N 131 ILE CA C N S 132 ILE C C N N 133 ILE O O N N 134 ILE CB C N S 135 ILE CG1 C N N 136 ILE CG2 C N N 137 ILE CD1 C N N 138 ILE OXT O N N 139 ILE H H N N 140 ILE H2 H N N 141 ILE HA H N N 142 ILE HB H N N 143 ILE HG12 H N N 144 ILE HG13 H N N 145 ILE HG21 H N N 146 ILE HG22 H N N 147 ILE HG23 H N N 148 ILE HD11 H N N 149 ILE HD12 H N N 150 ILE HD13 H N N 151 ILE HXT H N N 152 LEU N N N N 153 LEU CA C N S 154 LEU C C N N 155 LEU O O N N 156 LEU CB C N N 157 LEU CG C N N 158 LEU CD1 C N N 159 LEU CD2 C N N 160 LEU OXT O N N 161 LEU H H N N 162 LEU H2 H N N 163 LEU HA H N N 164 LEU HB2 H N N 165 LEU HB3 H N N 166 LEU HG H N N 167 LEU HD11 H N N 168 LEU HD12 H N N 169 LEU HD13 H N N 170 LEU HD21 H N N 171 LEU HD22 H N N 172 LEU HD23 H N N 173 LEU HXT H N N 174 LYS N N N N 175 LYS CA C N S 176 LYS C C N N 177 LYS O O N N 178 LYS CB C N N 179 LYS CG C N N 180 LYS CD C N N 181 LYS CE C N N 182 LYS NZ N N N 183 LYS OXT O N N 184 LYS H H N N 185 LYS H2 H N N 186 LYS HA H N N 187 LYS HB2 H N N 188 LYS HB3 H N N 189 LYS HG2 H N N 190 LYS HG3 H N N 191 LYS HD2 H N N 192 LYS HD3 H N N 193 LYS HE2 H N N 194 LYS HE3 H N N 195 LYS HZ1 H N N 196 LYS HZ2 H N N 197 LYS HZ3 H N N 198 LYS HXT H N N 199 NA NA NA N N 200 PRO N N N N 201 PRO CA C N S 202 PRO C C N N 203 PRO O O N N 204 PRO CB C N N 205 PRO CG C N N 206 PRO CD C N N 207 PRO OXT O N N 208 PRO H H N N 209 PRO HA H N N 210 PRO HB2 H N N 211 PRO HB3 H N N 212 PRO HG2 H N N 213 PRO HG3 H N N 214 PRO HD2 H N N 215 PRO HD3 H N N 216 PRO HXT H N N 217 SER N N N N 218 SER CA C N S 219 SER C C N N 220 SER O O N N 221 SER CB C N N 222 SER OG O N N 223 SER OXT O N N 224 SER H H N N 225 SER H2 H N N 226 SER HA H N N 227 SER HB2 H N N 228 SER HB3 H N N 229 SER HG H N N 230 SER HXT H N N 231 THR N N N N 232 THR CA C N S 233 THR C C N N 234 THR O O N N 235 THR CB C N R 236 THR OG1 O N N 237 THR CG2 C N N 238 THR OXT O N N 239 THR H H N N 240 THR H2 H N N 241 THR HA H N N 242 THR HB H N N 243 THR HG1 H N N 244 THR HG21 H N N 245 THR HG22 H N N 246 THR HG23 H N N 247 THR HXT H N N 248 TRP N N N N 249 TRP CA C N S 250 TRP C C N N 251 TRP O O N N 252 TRP CB C N N 253 TRP CG C Y N 254 TRP CD1 C Y N 255 TRP CD2 C Y N 256 TRP NE1 N Y N 257 TRP CE2 C Y N 258 TRP CE3 C Y N 259 TRP CZ2 C Y N 260 TRP CZ3 C Y N 261 TRP CH2 C Y N 262 TRP OXT O N N 263 TRP H H N N 264 TRP H2 H N N 265 TRP HA H N N 266 TRP HB2 H N N 267 TRP HB3 H N N 268 TRP HD1 H N N 269 TRP HE1 H N N 270 TRP HE3 H N N 271 TRP HZ2 H N N 272 TRP HZ3 H N N 273 TRP HH2 H N N 274 TRP HXT H N N 275 TYR N N N N 276 TYR CA C N S 277 TYR C C N N 278 TYR O O N N 279 TYR CB C N N 280 TYR CG C Y N 281 TYR CD1 C Y N 282 TYR CD2 C Y N 283 TYR CE1 C Y N 284 TYR CE2 C Y N 285 TYR CZ C Y N 286 TYR OH O N N 287 TYR OXT O N N 288 TYR H H N N 289 TYR H2 H N N 290 TYR HA H N N 291 TYR HB2 H N N 292 TYR HB3 H N N 293 TYR HD1 H N N 294 TYR HD2 H N N 295 TYR HE1 H N N 296 TYR HE2 H N N 297 TYR HH H N N 298 TYR HXT H N N 299 VAL N N N N 300 VAL CA C N S 301 VAL C C N N 302 VAL O O N N 303 VAL CB C N N 304 VAL CG1 C N N 305 VAL CG2 C N N 306 VAL OXT O N N 307 VAL H H N N 308 VAL H2 H N N 309 VAL HA H N N 310 VAL HB H N N 311 VAL HG11 H N N 312 VAL HG12 H N N 313 VAL HG13 H N N 314 VAL HG21 H N N 315 VAL HG22 H N N 316 VAL HG23 H N N 317 VAL HXT H N N 318 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 EDO C1 O1 sing N N 44 EDO C1 C2 sing N N 45 EDO C1 H11 sing N N 46 EDO C1 H12 sing N N 47 EDO O1 HO1 sing N N 48 EDO C2 O2 sing N N 49 EDO C2 H21 sing N N 50 EDO C2 H22 sing N N 51 EDO O2 HO2 sing N N 52 GLN N CA sing N N 53 GLN N H sing N N 54 GLN N H2 sing N N 55 GLN CA C sing N N 56 GLN CA CB sing N N 57 GLN CA HA sing N N 58 GLN C O doub N N 59 GLN C OXT sing N N 60 GLN CB CG sing N N 61 GLN CB HB2 sing N N 62 GLN CB HB3 sing N N 63 GLN CG CD sing N N 64 GLN CG HG2 sing N N 65 GLN CG HG3 sing N N 66 GLN CD OE1 doub N N 67 GLN CD NE2 sing N N 68 GLN NE2 HE21 sing N N 69 GLN NE2 HE22 sing N N 70 GLN OXT HXT sing N N 71 GLU N CA sing N N 72 GLU N H sing N N 73 GLU N H2 sing N N 74 GLU CA C sing N N 75 GLU CA CB sing N N 76 GLU CA HA sing N N 77 GLU C O doub N N 78 GLU C OXT sing N N 79 GLU CB CG sing N N 80 GLU CB HB2 sing N N 81 GLU CB HB3 sing N N 82 GLU CG CD sing N N 83 GLU CG HG2 sing N N 84 GLU CG HG3 sing N N 85 GLU CD OE1 doub N N 86 GLU CD OE2 sing N N 87 GLU OE2 HE2 sing N N 88 GLU OXT HXT sing N N 89 GLY N CA sing N N 90 GLY N H sing N N 91 GLY N H2 sing N N 92 GLY CA C sing N N 93 GLY CA HA2 sing N N 94 GLY CA HA3 sing N N 95 GLY C O doub N N 96 GLY C OXT sing N N 97 GLY OXT HXT sing N N 98 HIS N CA sing N N 99 HIS N H sing N N 100 HIS N H2 sing N N 101 HIS CA C sing N N 102 HIS CA CB sing N N 103 HIS CA HA sing N N 104 HIS C O doub N N 105 HIS C OXT sing N N 106 HIS CB CG sing N N 107 HIS CB HB2 sing N N 108 HIS CB HB3 sing N N 109 HIS CG ND1 sing Y N 110 HIS CG CD2 doub Y N 111 HIS ND1 CE1 doub Y N 112 HIS ND1 HD1 sing N N 113 HIS CD2 NE2 sing Y N 114 HIS CD2 HD2 sing N N 115 HIS CE1 NE2 sing Y N 116 HIS CE1 HE1 sing N N 117 HIS NE2 HE2 sing N N 118 HIS OXT HXT sing N N 119 HOH O H1 sing N N 120 HOH O H2 sing N N 121 ILE N CA sing N N 122 ILE N H sing N N 123 ILE N H2 sing N N 124 ILE CA C sing N N 125 ILE CA CB sing N N 126 ILE CA HA sing N N 127 ILE C O doub N N 128 ILE C OXT sing N N 129 ILE CB CG1 sing N N 130 ILE CB CG2 sing N N 131 ILE CB HB sing N N 132 ILE CG1 CD1 sing N N 133 ILE CG1 HG12 sing N N 134 ILE CG1 HG13 sing N N 135 ILE CG2 HG21 sing N N 136 ILE CG2 HG22 sing N N 137 ILE CG2 HG23 sing N N 138 ILE CD1 HD11 sing N N 139 ILE CD1 HD12 sing N N 140 ILE CD1 HD13 sing N N 141 ILE OXT HXT sing N N 142 LEU N CA sing N N 143 LEU N H sing N N 144 LEU N H2 sing N N 145 LEU CA C sing N N 146 LEU CA CB sing N N 147 LEU CA HA sing N N 148 LEU C O doub N N 149 LEU C OXT sing N N 150 LEU CB CG sing N N 151 LEU CB HB2 sing N N 152 LEU CB HB3 sing N N 153 LEU CG CD1 sing N N 154 LEU CG CD2 sing N N 155 LEU CG HG sing N N 156 LEU CD1 HD11 sing N N 157 LEU CD1 HD12 sing N N 158 LEU CD1 HD13 sing N N 159 LEU CD2 HD21 sing N N 160 LEU CD2 HD22 sing N N 161 LEU CD2 HD23 sing N N 162 LEU OXT HXT sing N N 163 LYS N CA sing N N 164 LYS N H sing N N 165 LYS N H2 sing N N 166 LYS CA C sing N N 167 LYS CA CB sing N N 168 LYS CA HA sing N N 169 LYS C O doub N N 170 LYS C OXT sing N N 171 LYS CB CG sing N N 172 LYS CB HB2 sing N N 173 LYS CB HB3 sing N N 174 LYS CG CD sing N N 175 LYS CG HG2 sing N N 176 LYS CG HG3 sing N N 177 LYS CD CE sing N N 178 LYS CD HD2 sing N N 179 LYS CD HD3 sing N N 180 LYS CE NZ sing N N 181 LYS CE HE2 sing N N 182 LYS CE HE3 sing N N 183 LYS NZ HZ1 sing N N 184 LYS NZ HZ2 sing N N 185 LYS NZ HZ3 sing N N 186 LYS OXT HXT sing N N 187 PRO N CA sing N N 188 PRO N CD sing N N 189 PRO N H sing N N 190 PRO CA C sing N N 191 PRO CA CB sing N N 192 PRO CA HA sing N N 193 PRO C O doub N N 194 PRO C OXT sing N N 195 PRO CB CG sing N N 196 PRO CB HB2 sing N N 197 PRO CB HB3 sing N N 198 PRO CG CD sing N N 199 PRO CG HG2 sing N N 200 PRO CG HG3 sing N N 201 PRO CD HD2 sing N N 202 PRO CD HD3 sing N N 203 PRO OXT HXT sing N N 204 SER N CA sing N N 205 SER N H sing N N 206 SER N H2 sing N N 207 SER CA C sing N N 208 SER CA CB sing N N 209 SER CA HA sing N N 210 SER C O doub N N 211 SER C OXT sing N N 212 SER CB OG sing N N 213 SER CB HB2 sing N N 214 SER CB HB3 sing N N 215 SER OG HG sing N N 216 SER OXT HXT sing N N 217 THR N CA sing N N 218 THR N H sing N N 219 THR N H2 sing N N 220 THR CA C sing N N 221 THR CA CB sing N N 222 THR CA HA sing N N 223 THR C O doub N N 224 THR C OXT sing N N 225 THR CB OG1 sing N N 226 THR CB CG2 sing N N 227 THR CB HB sing N N 228 THR OG1 HG1 sing N N 229 THR CG2 HG21 sing N N 230 THR CG2 HG22 sing N N 231 THR CG2 HG23 sing N N 232 THR OXT HXT sing N N 233 TRP N CA sing N N 234 TRP N H sing N N 235 TRP N H2 sing N N 236 TRP CA C sing N N 237 TRP CA CB sing N N 238 TRP CA HA sing N N 239 TRP C O doub N N 240 TRP C OXT sing N N 241 TRP CB CG sing N N 242 TRP CB HB2 sing N N 243 TRP CB HB3 sing N N 244 TRP CG CD1 doub Y N 245 TRP CG CD2 sing Y N 246 TRP CD1 NE1 sing Y N 247 TRP CD1 HD1 sing N N 248 TRP CD2 CE2 doub Y N 249 TRP CD2 CE3 sing Y N 250 TRP NE1 CE2 sing Y N 251 TRP NE1 HE1 sing N N 252 TRP CE2 CZ2 sing Y N 253 TRP CE3 CZ3 doub Y N 254 TRP CE3 HE3 sing N N 255 TRP CZ2 CH2 doub Y N 256 TRP CZ2 HZ2 sing N N 257 TRP CZ3 CH2 sing Y N 258 TRP CZ3 HZ3 sing N N 259 TRP CH2 HH2 sing N N 260 TRP OXT HXT sing N N 261 TYR N CA sing N N 262 TYR N H sing N N 263 TYR N H2 sing N N 264 TYR CA C sing N N 265 TYR CA CB sing N N 266 TYR CA HA sing N N 267 TYR C O doub N N 268 TYR C OXT sing N N 269 TYR CB CG sing N N 270 TYR CB HB2 sing N N 271 TYR CB HB3 sing N N 272 TYR CG CD1 doub Y N 273 TYR CG CD2 sing Y N 274 TYR CD1 CE1 sing Y N 275 TYR CD1 HD1 sing N N 276 TYR CD2 CE2 doub Y N 277 TYR CD2 HD2 sing N N 278 TYR CE1 CZ doub Y N 279 TYR CE1 HE1 sing N N 280 TYR CE2 CZ sing Y N 281 TYR CE2 HE2 sing N N 282 TYR CZ OH sing N N 283 TYR OH HH sing N N 284 TYR OXT HXT sing N N 285 VAL N CA sing N N 286 VAL N H sing N N 287 VAL N H2 sing N N 288 VAL CA C sing N N 289 VAL CA CB sing N N 290 VAL CA HA sing N N 291 VAL C O doub N N 292 VAL C OXT sing N N 293 VAL CB CG1 sing N N 294 VAL CB CG2 sing N N 295 VAL CB HB sing N N 296 VAL CG1 HG11 sing N N 297 VAL CG1 HG12 sing N N 298 VAL CG1 HG13 sing N N 299 VAL CG2 HG21 sing N N 300 VAL CG2 HG22 sing N N 301 VAL CG2 HG23 sing N N 302 VAL OXT HXT sing N N 303 # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 22074070 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6SX1 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8YK7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.013111 _atom_sites.fract_transf_matrix[1][2] 0.007569 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015139 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042871 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CU N NA O # loop_ # loop_ #