HEADER DE NOVO PROTEIN 05-MAR-24 8YL4 TITLE CRYSTAL STRUCTURE OF THE DE NOVO DESIGNED PROTEIN 200 AA IN THE TITLE 2 CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO PROTEIN DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHAO,M.HATTORI REVDAT 2 06-NOV-24 8YL4 1 JRNL REVDAT 1 16-OCT-24 8YL4 0 JRNL AUTH C.FRANK,A.KHOSHOUEI,L.FU BETA,D.SCHIWIETZ,D.PUTZ,L.WEBER, JRNL AUTH 2 Z.ZHAO,M.HATTORI,S.FENG,Y.DE STIGTER,S.OVCHINNIKOV,H.DIETZ JRNL TITL SCALABLE PROTEIN DESIGN USING OPTIMIZATION IN A RELAXED JRNL TITL 2 SEQUENCE SPACE. JRNL REF SCIENCE V. 386 439 2024 JRNL REFN ESSN 1095-9203 JRNL PMID 39446959 JRNL DOI 10.1126/SCIENCE.ADQ1741 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.1000 - 2.8800 0.99 0 143 0.3754 0.4075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3055 REMARK 3 ANGLE : 1.362 4165 REMARK 3 CHIRALITY : 0.068 500 REMARK 3 PLANARITY : 0.017 538 REMARK 3 DIHEDRAL : 9.861 444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 76.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.79500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE TRIBASIC DIHYDRATE, REMARK 280 HEPES, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.23750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.55750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.55750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.35625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.55750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.55750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.11875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.55750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.55750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.35625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.55750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.55750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.11875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.23750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 201 REMARK 465 SER A 202 REMARK 465 LEU A 203 REMARK 465 GLU A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 GLY A 207 REMARK 465 LEU A 208 REMARK 465 GLU A 209 REMARK 465 VAL A 210 REMARK 465 LEU A 211 REMARK 465 PHE A 212 REMARK 465 GLN A 213 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 LYS B 2 REMARK 465 VAL B 210 REMARK 465 LEU B 211 REMARK 465 PHE B 212 REMARK 465 GLN B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 LEU A 33 CG CD1 CD2 REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 GLU A 162 CD OE1 OE2 REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 ASP B 4 CG OD1 OD2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 ASN B 35 CG OD1 ND2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 LYS B 110 CE NZ REMARK 470 GLN B 122 CG CD OE1 NE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 GLN B 136 CG CD OE1 NE2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 162 CD OE1 OE2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 LYS B 165 CE NZ REMARK 470 SER B 202 OG REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 SER B 205 OG REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 11 OD2 ASP B 16 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 198 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG A 198 CB - CG - CD ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG B 141 CB - CG - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG B 141 CG - CD - NE ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 31 -10.19 -140.81 REMARK 500 PRO A 36 38.60 -78.44 REMARK 500 TYR B 31 -13.31 -140.79 REMARK 500 PRO B 36 38.00 -79.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 198 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 421 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A 422 DISTANCE = 10.15 ANGSTROMS REMARK 525 HOH A 423 DISTANCE = 10.46 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GOL A 301 REMARK 610 GOL A 302 DBREF 8YL4 A 0 213 PDB 8YL4 8YL4 0 213 DBREF 8YL4 B 0 213 PDB 8YL4 8YL4 0 213 SEQRES 1 A 214 MET THR LYS PRO ASP PHE THR GLY ALA ARG GLU ARG PHE SEQRES 2 A 214 LEU ALA GLY ASP VAL THR ILE VAL LEU LEU ILE ALA GLU SEQRES 3 A 214 SER HIS ASP ALA PRO TYR ARG LEU ALA ASN PRO GLU ASP SEQRES 4 A 214 PRO GLU ALA ASP LEU SER ASP GLU GLN LEU GLU ARG ALA SEQRES 5 A 214 LEU ALA ALA TYR LEU THR LEU VAL GLU THR LEU PHE PRO SEQRES 6 A 214 GLU LEU TYR ALA GLU MET LYS ALA ALA LEU ALA ALA ALA SEQRES 7 A 214 LYS THR PRO GLU GLU LYS ILE ALA VAL PHE ARG GLU TYR SEQRES 8 A 214 ASN ALA ARG PHE LEU ALA GLU PHE ASP ALA LEU ILE ASP SEQRES 9 A 214 GLN ALA PHE ALA ARG LEU LYS ALA ASP SER LEU THR LEU SEQRES 10 A 214 LYS ILE HIS LEU SER GLN GLY LYS GLY SER TYR GLU ILE SEQRES 11 A 214 ILE PHE PRO PRO GLU VAL GLN ALA ASP PRO GLU ARG ALA SEQRES 12 A 214 ALA ALA ILE GLU ALA LEU TRP LYS PRO THR LEU ASP GLN SEQRES 13 A 214 LEU LEU ALA VAL LEU GLN GLU LYS HIS LYS GLY LYS PRO SEQRES 14 A 214 ALA THR THR VAL THR TYR GLU ILE SER ALA GLU THR LEU SEQRES 15 A 214 ARG ALA ALA VAL ALA ALA LEU ALA ARG ALA ALA GLU ALA SEQRES 16 A 214 ALA LEU ARG ARG LYS VAL GLY SER LEU GLU SER SER GLY SEQRES 17 A 214 LEU GLU VAL LEU PHE GLN SEQRES 1 B 214 MET THR LYS PRO ASP PHE THR GLY ALA ARG GLU ARG PHE SEQRES 2 B 214 LEU ALA GLY ASP VAL THR ILE VAL LEU LEU ILE ALA GLU SEQRES 3 B 214 SER HIS ASP ALA PRO TYR ARG LEU ALA ASN PRO GLU ASP SEQRES 4 B 214 PRO GLU ALA ASP LEU SER ASP GLU GLN LEU GLU ARG ALA SEQRES 5 B 214 LEU ALA ALA TYR LEU THR LEU VAL GLU THR LEU PHE PRO SEQRES 6 B 214 GLU LEU TYR ALA GLU MET LYS ALA ALA LEU ALA ALA ALA SEQRES 7 B 214 LYS THR PRO GLU GLU LYS ILE ALA VAL PHE ARG GLU TYR SEQRES 8 B 214 ASN ALA ARG PHE LEU ALA GLU PHE ASP ALA LEU ILE ASP SEQRES 9 B 214 GLN ALA PHE ALA ARG LEU LYS ALA ASP SER LEU THR LEU SEQRES 10 B 214 LYS ILE HIS LEU SER GLN GLY LYS GLY SER TYR GLU ILE SEQRES 11 B 214 ILE PHE PRO PRO GLU VAL GLN ALA ASP PRO GLU ARG ALA SEQRES 12 B 214 ALA ALA ILE GLU ALA LEU TRP LYS PRO THR LEU ASP GLN SEQRES 13 B 214 LEU LEU ALA VAL LEU GLN GLU LYS HIS LYS GLY LYS PRO SEQRES 14 B 214 ALA THR THR VAL THR TYR GLU ILE SER ALA GLU THR LEU SEQRES 15 B 214 ARG ALA ALA VAL ALA ALA LEU ALA ARG ALA ALA GLU ALA SEQRES 16 B 214 ALA LEU ARG ARG LYS VAL GLY SER LEU GLU SER SER GLY SEQRES 17 B 214 LEU GLU VAL LEU PHE GLN HET GOL A 301 5 HET GOL A 302 5 HET GOL A 303 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *30(H2 O) HELIX 1 AA1 GLY A 7 ALA A 14 1 8 HELIX 2 AA2 VAL A 17 HIS A 27 1 11 HELIX 3 AA3 ASP A 38 LEU A 43 1 6 HELIX 4 AA4 SER A 44 PHE A 63 1 20 HELIX 5 AA5 PHE A 63 ALA A 77 1 15 HELIX 6 AA6 THR A 79 LYS A 110 1 32 HELIX 7 AA7 PRO A 132 ALA A 137 1 6 HELIX 8 AA8 ASP A 138 HIS A 164 1 27 HELIX 9 AA9 SER A 177 VAL A 200 1 24 HELIX 10 AB1 GLY B 7 GLY B 15 1 9 HELIX 11 AB2 THR B 18 HIS B 27 1 10 HELIX 12 AB3 ASP B 38 LEU B 43 1 6 HELIX 13 AB4 SER B 44 PHE B 63 1 20 HELIX 14 AB5 PHE B 63 ALA B 77 1 15 HELIX 15 AB6 THR B 79 LYS B 110 1 32 HELIX 16 AB7 PRO B 132 ALA B 137 1 6 HELIX 17 AB8 ASP B 138 HIS B 164 1 27 HELIX 18 AB9 ALA B 178 GLY B 201 1 24 SHEET 1 AA1 3 SER A 126 ILE A 130 0 SHEET 2 AA1 3 LEU A 114 LEU A 120 -1 N HIS A 119 O SER A 126 SHEET 3 AA1 3 THR A 170 ILE A 176 -1 O TYR A 174 N LEU A 116 SHEET 1 AA2 3 SER B 126 ILE B 130 0 SHEET 2 AA2 3 SER B 113 LEU B 120 -1 N THR B 115 O ILE B 130 SHEET 3 AA2 3 THR B 170 SER B 177 -1 O THR B 170 N LEU B 120 CRYST1 95.115 95.115 128.475 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007784 0.00000 TER 1463 VAL A 200 TER 2981 GLU B 209 HETATM 2982 C1 GOL A 301 -11.807 -21.592 -48.943 1.00 86.79 C HETATM 2983 O1 GOL A 301 -10.777 -22.281 -48.267 1.00 99.13 O HETATM 2984 C2 GOL A 301 -11.183 -20.316 -49.588 1.00109.87 C HETATM 2985 C3 GOL A 301 -12.184 -19.884 -50.708 1.00108.16 C HETATM 2986 O3 GOL A 301 -11.703 -18.688 -51.265 1.00 95.12 O HETATM 2987 C1 GOL A 302 -27.643 13.813 -36.260 1.00 80.21 C HETATM 2988 O1 GOL A 302 -28.307 14.283 -37.397 1.00100.26 O HETATM 2989 C2 GOL A 302 -26.239 14.454 -36.294 1.00 82.63 C HETATM 2990 C3 GOL A 302 -26.065 15.081 -34.901 1.00 79.15 C HETATM 2991 O3 GOL A 302 -24.923 15.874 -34.982 1.00 84.66 O HETATM 2992 C1 GOL A 303 -0.230 -16.598 -30.122 1.00 84.83 C HETATM 2993 O1 GOL A 303 0.878 -17.073 -29.406 1.00 94.31 O HETATM 2994 C2 GOL A 303 -0.328 -17.374 -31.494 1.00 84.26 C HETATM 2995 O2 GOL A 303 -0.145 -18.746 -31.358 1.00 94.89 O HETATM 2996 C3 GOL A 303 -1.753 -17.083 -32.030 1.00 97.39 C HETATM 2997 O3 GOL A 303 -2.098 -15.764 -31.654 1.00103.22 O HETATM 2998 C1 GOL B 301 -49.896 -13.458 -0.322 1.00 97.38 C HETATM 2999 O1 GOL B 301 -49.921 -12.913 -1.569 1.00102.77 O HETATM 3000 C2 GOL B 301 -48.586 -12.993 0.277 1.00114.42 C HETATM 3001 O2 GOL B 301 -48.651 -11.642 0.682 1.00106.11 O HETATM 3002 C3 GOL B 301 -48.304 -13.986 1.426 1.00 98.97 C HETATM 3003 O3 GOL B 301 -46.927 -14.057 1.550 1.00 96.59 O HETATM 3004 O HOH A 401 5.128 -9.164 -29.944 1.00 87.99 O HETATM 3005 O HOH A 402 -2.433 -7.715 -34.495 1.00 60.90 O HETATM 3006 O HOH A 403 -15.876 7.769 -24.828 1.00 75.82 O HETATM 3007 O HOH A 404 -21.646 -28.633 -27.501 1.00 73.99 O HETATM 3008 O HOH A 405 -3.604 -18.673 -19.046 1.00 77.70 O HETATM 3009 O HOH A 406 5.402 -5.383 -33.658 1.00 73.46 O HETATM 3010 O HOH A 407 -1.502 -4.701 -21.265 1.00 54.62 O HETATM 3011 O HOH A 408 -12.304 0.482 -42.191 1.00 66.87 O HETATM 3012 O HOH A 409 -25.539 14.813 -39.393 1.00 75.36 O HETATM 3013 O HOH A 410 -28.835 -1.493 -26.699 1.00 67.16 O HETATM 3014 O HOH A 411 -12.593 -16.432 -48.648 1.00 83.12 O HETATM 3015 O HOH A 412 -0.510 6.014 -23.344 1.00 57.94 O HETATM 3016 O HOH A 413 3.275 -18.700 -23.306 1.00 73.01 O HETATM 3017 O HOH A 414 -3.032 -19.249 -15.804 1.00 69.41 O HETATM 3018 O HOH A 415 -19.596 -21.804 -29.836 1.00 92.05 O HETATM 3019 O HOH A 416 -5.869 -20.709 -37.911 1.00 60.73 O HETATM 3020 O HOH A 417 -41.668 -0.894 -39.060 1.00 68.67 O HETATM 3021 O HOH A 418 -9.699 -18.540 -55.345 1.00 73.19 O HETATM 3022 O HOH A 419 -8.350 -21.719 -53.477 1.00 75.13 O HETATM 3023 O HOH A 420 -10.036 -27.260 -49.410 1.00 94.49 O HETATM 3024 O HOH A 421 -15.523 -23.259 -8.456 1.00 75.39 O HETATM 3025 O HOH A 422 -4.426 -31.926 -32.843 1.00 77.09 O HETATM 3026 O HOH A 423 -5.022 -20.155 -59.183 1.00 65.16 O HETATM 3027 O HOH B 401 -6.975 10.540 -1.071 1.00109.88 O HETATM 3028 O HOH B 402 7.196 13.032 -20.506 1.00 63.53 O HETATM 3029 O HOH B 403 3.076 -3.689 -14.361 1.00 67.22 O HETATM 3030 O HOH B 404 -43.475 -11.290 1.449 1.00 71.06 O HETATM 3031 O HOH B 405 -39.990 17.645 2.168 1.00 55.81 O HETATM 3032 O HOH B 406 -46.732 -10.003 -3.798 1.00 86.98 O HETATM 3033 O HOH B 407 5.965 7.644 0.530 0.75 49.88 O CONECT 2982 2983 2984 CONECT 2983 2982 CONECT 2984 2982 2985 CONECT 2985 2984 2986 CONECT 2986 2985 CONECT 2987 2988 2989 CONECT 2988 2987 CONECT 2989 2987 2990 CONECT 2990 2989 2991 CONECT 2991 2990 CONECT 2992 2993 2994 CONECT 2993 2992 CONECT 2994 2992 2995 2996 CONECT 2995 2994 CONECT 2996 2994 2997 CONECT 2997 2996 CONECT 2998 2999 3000 CONECT 2999 2998 CONECT 3000 2998 3001 3002 CONECT 3001 3000 CONECT 3002 3000 3003 CONECT 3003 3002 MASTER 378 0 4 18 6 0 0 6 3031 2 22 34 END