HEADER TRANSCRIPTION 06-MAR-24 8YLG TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA THAILANDENSIS MFTR IN COMPLEX WITH TITLE 2 OPERATOR DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MARR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (28-MER); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (28-MER); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 57975; SOURCE 4 GENE: A8H32_16025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 10 ORGANISM_TAXID: 57975; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 14 ORGANISM_TAXID: 57975 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.S.SONG,S.I.YOON REVDAT 1 13-NOV-24 8YLG 0 JRNL AUTH W.S.SONG,D.U.KI,H.Y.CHO,O.H.KWON,H.CHO,S.I.YOON JRNL TITL STRUCTURAL BASIS OF TRANSCRIPTIONAL REGULATION BY URTR IN JRNL TITL 2 RESPONSE TO URIC ACID. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39484741 JRNL DOI 10.1093/NAR/GKAE922 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 64912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 3368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8900 - 5.1800 0.97 2696 133 0.1781 0.1803 REMARK 3 2 5.1800 - 4.1200 0.99 2668 122 0.1509 0.1776 REMARK 3 3 4.1200 - 3.6000 1.00 2600 155 0.1669 0.1750 REMARK 3 4 3.6000 - 3.2700 1.00 2576 167 0.1762 0.1870 REMARK 3 5 3.2700 - 3.0400 1.00 2575 149 0.1898 0.2175 REMARK 3 6 3.0400 - 2.8600 1.00 2593 122 0.2123 0.2421 REMARK 3 7 2.8600 - 2.7100 1.00 2599 133 0.2146 0.2234 REMARK 3 8 2.7100 - 2.6000 1.00 2561 149 0.2124 0.2438 REMARK 3 9 2.6000 - 2.5000 1.00 2572 132 0.2005 0.2446 REMARK 3 10 2.5000 - 2.4100 1.00 2574 128 0.1979 0.2473 REMARK 3 11 2.4100 - 2.3300 1.00 2568 143 0.2002 0.2257 REMARK 3 12 2.3300 - 2.2700 1.00 2567 144 0.1921 0.1846 REMARK 3 13 2.2700 - 2.2100 1.00 2522 146 0.1970 0.2225 REMARK 3 14 2.2100 - 2.1500 1.00 2544 144 0.2047 0.2481 REMARK 3 15 2.1500 - 2.1100 1.00 2562 148 0.2084 0.2447 REMARK 3 16 2.1100 - 2.0600 1.00 2542 145 0.2206 0.2843 REMARK 3 17 2.0600 - 2.0200 1.00 2538 134 0.2252 0.2537 REMARK 3 18 2.0200 - 1.9800 1.00 2544 145 0.2426 0.2691 REMARK 3 19 1.9800 - 1.9500 1.00 2545 137 0.2433 0.2856 REMARK 3 20 1.9500 - 1.9100 1.00 2523 140 0.2513 0.2844 REMARK 3 21 1.9100 - 1.8800 1.00 2506 145 0.2723 0.2952 REMARK 3 22 1.8800 - 1.8500 0.99 2544 132 0.2852 0.3174 REMARK 3 23 1.8500 - 1.8300 0.99 2505 155 0.3040 0.3760 REMARK 3 24 1.8300 - 1.8000 0.99 2520 120 0.3123 0.3484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3786 REMARK 3 ANGLE : 0.956 5374 REMARK 3 CHIRALITY : 0.050 612 REMARK 3 PLANARITY : 0.006 511 REMARK 3 DIHEDRAL : 19.420 2108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9477 -34.5791 8.4177 REMARK 3 T TENSOR REMARK 3 T11: 0.2323 T22: 0.3708 REMARK 3 T33: 0.1631 T12: 0.0031 REMARK 3 T13: 0.0021 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.5553 L22: 2.2596 REMARK 3 L33: 8.4205 L12: 0.7041 REMARK 3 L13: 3.9840 L23: 1.4115 REMARK 3 S TENSOR REMARK 3 S11: 0.1693 S12: 0.5382 S13: -0.2263 REMARK 3 S21: -0.1643 S22: 0.1487 S23: -0.0455 REMARK 3 S31: 0.3411 S32: -0.0255 S33: -0.2967 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 26 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5469 -25.3073 -10.2152 REMARK 3 T TENSOR REMARK 3 T11: 0.5496 T22: 0.8229 REMARK 3 T33: 0.4132 T12: -0.1280 REMARK 3 T13: 0.0946 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 5.8311 L22: 2.0127 REMARK 3 L33: 6.1269 L12: -7.5579 REMARK 3 L13: -5.8105 L23: 7.3463 REMARK 3 S TENSOR REMARK 3 S11: 0.6686 S12: -0.7426 S13: 1.3977 REMARK 3 S21: -1.1787 S22: 0.8122 S23: -0.7544 REMARK 3 S31: -1.4803 S32: 1.5429 S33: -1.1901 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2353 -13.4588 33.6072 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.1927 REMARK 3 T33: 0.1942 T12: -0.0285 REMARK 3 T13: -0.0147 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.9224 L22: 1.4067 REMARK 3 L33: 0.9588 L12: -2.0558 REMARK 3 L13: -0.6331 L23: 0.1180 REMARK 3 S TENSOR REMARK 3 S11: 0.1836 S12: -0.1943 S13: 0.2060 REMARK 3 S21: -0.0007 S22: -0.0239 S23: -0.2032 REMARK 3 S31: -0.1226 S32: 0.2326 S33: -0.1269 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8285 -23.8814 21.0388 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.2273 REMARK 3 T33: 0.1745 T12: 0.0048 REMARK 3 T13: -0.0001 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 1.4807 L22: 1.2506 REMARK 3 L33: 2.6419 L12: -0.2301 REMARK 3 L13: -0.3909 L23: 0.4057 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: 0.3620 S13: 0.0024 REMARK 3 S21: -0.0597 S22: -0.0360 S23: 0.1512 REMARK 3 S31: 0.0228 S32: -0.4034 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0576 -7.7354 29.3159 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.1559 REMARK 3 T33: 0.2246 T12: 0.0422 REMARK 3 T13: 0.0360 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.4244 L22: 1.7595 REMARK 3 L33: 1.2607 L12: 0.6976 REMARK 3 L13: 0.1343 L23: 0.2481 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: 0.0958 S13: 0.5256 REMARK 3 S21: 0.0871 S22: -0.0045 S23: 0.1882 REMARK 3 S31: -0.2220 S32: -0.0872 S33: -0.1001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3738 -6.9669 21.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.3062 REMARK 3 T33: 0.3019 T12: 0.0857 REMARK 3 T13: 0.0167 T23: 0.1224 REMARK 3 L TENSOR REMARK 3 L11: 9.2896 L22: 1.3864 REMARK 3 L33: 2.7287 L12: -1.3153 REMARK 3 L13: -2.7367 L23: 0.4749 REMARK 3 S TENSOR REMARK 3 S11: 0.2356 S12: 0.4746 S13: 0.6362 REMARK 3 S21: -0.0128 S22: 0.0496 S23: 0.1633 REMARK 3 S31: -0.2641 S32: -0.1967 S33: -0.3169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1179 -12.2144 23.6571 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1402 REMARK 3 T33: 0.1639 T12: -0.0335 REMARK 3 T13: -0.0134 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 8.4722 L22: 8.4826 REMARK 3 L33: 5.2976 L12: -7.2874 REMARK 3 L13: -4.5416 L23: 4.2630 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: 0.3005 S13: 0.0135 REMARK 3 S21: -0.0864 S22: -0.0472 S23: 0.2865 REMARK 3 S31: -0.1354 S32: -0.1525 S33: -0.0014 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8235 -24.1947 19.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1747 REMARK 3 T33: 0.1142 T12: -0.0180 REMARK 3 T13: -0.0004 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 4.7602 L22: 6.5669 REMARK 3 L33: 3.5663 L12: -2.6597 REMARK 3 L13: 2.8208 L23: -4.5391 REMARK 3 S TENSOR REMARK 3 S11: -0.1128 S12: 0.5223 S13: -0.4670 REMARK 3 S21: -0.3455 S22: -0.0216 S23: -0.1439 REMARK 3 S31: 0.1528 S32: 0.0761 S33: -0.0209 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3266 -30.2800 36.9186 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.1474 REMARK 3 T33: 0.1746 T12: 0.0438 REMARK 3 T13: -0.0389 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.8181 L22: 2.1922 REMARK 3 L33: 3.4858 L12: 1.1018 REMARK 3 L13: -0.4288 L23: -0.8311 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.0398 S13: -0.2739 REMARK 3 S21: 0.1037 S22: -0.0416 S23: -0.2598 REMARK 3 S31: 0.2195 S32: 0.2976 S33: -0.0034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3457 -17.7201 22.9611 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.2807 REMARK 3 T33: 0.2045 T12: -0.0486 REMARK 3 T13: 0.0496 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 9.3920 L22: 5.7747 REMARK 3 L33: 4.4136 L12: -7.2892 REMARK 3 L13: 3.8301 L23: -4.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.2027 S13: 0.1211 REMARK 3 S21: 0.1367 S22: -0.0035 S23: -0.3141 REMARK 3 S31: -0.2122 S32: 0.3874 S33: 0.0850 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7261 -3.3974 32.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.1239 REMARK 3 T33: 0.2248 T12: 0.0063 REMARK 3 T13: -0.0121 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 7.5595 L22: 7.6398 REMARK 3 L33: 8.0310 L12: 1.4968 REMARK 3 L13: -4.8711 L23: -3.1384 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: -0.4494 S13: 0.5679 REMARK 3 S21: 0.3266 S22: -0.1275 S23: -0.2076 REMARK 3 S31: -0.5384 S32: 0.4227 S33: -0.0541 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4526 -32.8189 -9.2537 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.7334 REMARK 3 T33: 0.2352 T12: 0.0106 REMARK 3 T13: -0.0281 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 3.8034 L22: 4.5553 REMARK 3 L33: 7.2692 L12: 1.3705 REMARK 3 L13: 3.7096 L23: 3.9059 REMARK 3 S TENSOR REMARK 3 S11: 0.3717 S12: -0.5040 S13: -0.4528 REMARK 3 S21: 0.0952 S22: 0.1727 S23: -0.3022 REMARK 3 S31: 0.6387 S32: 1.1788 S33: -0.4587 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1424 -31.7231 8.7140 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.3753 REMARK 3 T33: 0.1478 T12: -0.0419 REMARK 3 T13: -0.0129 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.1474 L22: 5.5463 REMARK 3 L33: 3.5613 L12: -1.3982 REMARK 3 L13: 0.2470 L23: 1.4548 REMARK 3 S TENSOR REMARK 3 S11: 0.1589 S12: 0.7880 S13: -0.0315 REMARK 3 S21: -0.3572 S22: 0.1108 S23: 0.2028 REMARK 3 S31: 0.0272 S32: -0.1738 S33: -0.1829 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1742 -36.3089 30.9556 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1088 REMARK 3 T33: 0.2078 T12: 0.0208 REMARK 3 T13: -0.0433 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.6819 L22: 3.3575 REMARK 3 L33: 3.2776 L12: 1.4803 REMARK 3 L13: 1.5698 L23: -0.9366 REMARK 3 S TENSOR REMARK 3 S11: 0.2170 S12: -0.0955 S13: -0.3060 REMARK 3 S21: 0.0984 S22: 0.1907 S23: 0.2514 REMARK 3 S31: 0.2277 S32: 0.0879 S33: -0.3113 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9674 -37.2731 57.3362 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.3807 REMARK 3 T33: 0.2571 T12: -0.0182 REMARK 3 T13: -0.0825 T23: 0.1283 REMARK 3 L TENSOR REMARK 3 L11: 2.8607 L22: 0.4555 REMARK 3 L33: 5.3894 L12: -0.3109 REMARK 3 L13: 2.3608 L23: 0.6353 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.1852 S13: -0.1402 REMARK 3 S21: 0.1265 S22: 0.2398 S23: 0.0571 REMARK 3 S31: 0.3532 S32: -0.0230 S33: -0.2902 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8624 -37.0002 64.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.5141 REMARK 3 T33: 0.3596 T12: -0.0238 REMARK 3 T13: -0.1410 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 6.3777 L22: 5.2381 REMARK 3 L33: 8.0345 L12: -4.9666 REMARK 3 L13: 5.3595 L23: -5.2750 REMARK 3 S TENSOR REMARK 3 S11: 0.6512 S12: 0.0522 S13: -1.1966 REMARK 3 S21: -0.4029 S22: 0.5429 S23: 1.2898 REMARK 3 S31: 0.5544 S32: -1.4143 S33: -1.0853 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4852 -37.1708 39.2595 REMARK 3 T TENSOR REMARK 3 T11: 0.2696 T22: 0.1949 REMARK 3 T33: 0.2097 T12: -0.0226 REMARK 3 T13: -0.0238 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 3.7605 L22: 1.1946 REMARK 3 L33: 6.5081 L12: -0.6901 REMARK 3 L13: 4.4200 L23: -1.7836 REMARK 3 S TENSOR REMARK 3 S11: 0.2297 S12: -0.3607 S13: -0.4224 REMARK 3 S21: 0.0433 S22: 0.1141 S23: 0.0410 REMARK 3 S31: 0.3659 S32: -0.5539 S33: -0.3433 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65149 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: IN-HOUSE SE-SAD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CACODYLATE, CALCIUM REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.27700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.27700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 LYS A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 162 REMARK 465 GLU A 163 REMARK 465 GLY A 164 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 LYS B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 ALA B 161 REMARK 465 ALA B 162 REMARK 465 GLU B 163 REMARK 465 GLY B 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS B 95 CD CE NZ REMARK 470 ARG B 136 CD NE CZ NH1 NH2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 22 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 28 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 22 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 67 31.49 -92.44 REMARK 500 PRO B 67 30.28 -90.99 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8YLG A 1 164 UNP A0A2N8QSC4_BURTH DBREF2 8YLG A A0A2N8QSC4 1 164 DBREF1 8YLG B 1 164 UNP A0A2N8QSC4_BURTH DBREF2 8YLG B A0A2N8QSC4 1 164 DBREF 8YLG C 1 28 PDB 8YLG 8YLG 1 28 DBREF 8YLG D 1 28 PDB 8YLG 8YLG 1 28 SEQADV 8YLG SER A -4 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG ALA A -3 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG LYS A -2 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG ASP A -1 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG PRO A 0 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG SER B -4 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG ALA B -3 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG LYS B -2 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG ASP B -1 UNP A0A2N8QSC EXPRESSION TAG SEQADV 8YLG PRO B 0 UNP A0A2N8QSC EXPRESSION TAG SEQRES 1 A 169 SER ALA LYS ASP PRO MET ASP ARG ALA ALA HIS ALA VAL SEQRES 2 A 169 GLU GLN TRP ARG SER GLU ARG PRO ASP LEU ASP PRO SER SEQRES 3 A 169 SER MET ILE VAL LEU GLY ARG LEU GLN GLU ALA ALA LEU SEQRES 4 A 169 VAL ILE ALA ARG ASP ARG LEU ASN PRO LEU PHE ALA ARG SEQRES 5 A 169 TYR GLY LEU GLN PRO GLY GLU PHE ASP VAL LEU ALA THR SEQRES 6 A 169 LEU ARG ARG SER GLY ALA PRO TYR ALA LEU THR PRO THR SEQRES 7 A 169 ALA LEU TYR ASP ALA ALA MET ILE SER SER GLY SER MET SEQRES 8 A 169 THR ASN ARG ILE ASP ARG LEU GLU LYS ALA GLY TRP VAL SEQRES 9 A 169 GLU ARG ARG ALA ASN PRO ALA ASP GLY ARG GLY THR LEU SEQRES 10 A 169 VAL ALA LEU THR SER ALA GLY ARG ALA LEU ILE ASP ASP SEQRES 11 A 169 ALA VAL VAL ALA HIS VAL ASP ASN GLN ARG ARG VAL LEU SEQRES 12 A 169 SER ALA LEU SER ALA ALA GLU GLN ARG GLN LEU ALA LYS SEQRES 13 A 169 LEU LEU ASP LYS LEU LEU GLN GLY GLN ALA ALA GLU GLY SEQRES 1 B 169 SER ALA LYS ASP PRO MET ASP ARG ALA ALA HIS ALA VAL SEQRES 2 B 169 GLU GLN TRP ARG SER GLU ARG PRO ASP LEU ASP PRO SER SEQRES 3 B 169 SER MET ILE VAL LEU GLY ARG LEU GLN GLU ALA ALA LEU SEQRES 4 B 169 VAL ILE ALA ARG ASP ARG LEU ASN PRO LEU PHE ALA ARG SEQRES 5 B 169 TYR GLY LEU GLN PRO GLY GLU PHE ASP VAL LEU ALA THR SEQRES 6 B 169 LEU ARG ARG SER GLY ALA PRO TYR ALA LEU THR PRO THR SEQRES 7 B 169 ALA LEU TYR ASP ALA ALA MET ILE SER SER GLY SER MET SEQRES 8 B 169 THR ASN ARG ILE ASP ARG LEU GLU LYS ALA GLY TRP VAL SEQRES 9 B 169 GLU ARG ARG ALA ASN PRO ALA ASP GLY ARG GLY THR LEU SEQRES 10 B 169 VAL ALA LEU THR SER ALA GLY ARG ALA LEU ILE ASP ASP SEQRES 11 B 169 ALA VAL VAL ALA HIS VAL ASP ASN GLN ARG ARG VAL LEU SEQRES 12 B 169 SER ALA LEU SER ALA ALA GLU GLN ARG GLN LEU ALA LYS SEQRES 13 B 169 LEU LEU ASP LYS LEU LEU GLN GLY GLN ALA ALA GLU GLY SEQRES 1 C 28 DC DG DA DC DA DT DG DT DC DT DC DT DA SEQRES 2 C 28 DC DG DT DC DA DA DG DA DT DA DA DC DT SEQRES 3 C 28 DT DG SEQRES 1 D 28 DC DA DA DG DT DT DA DT DC DT DT DG DA SEQRES 2 D 28 DC DG DT DA DG DA DG DA DC DA DT DG DT SEQRES 3 D 28 DC DG FORMUL 5 HOH *300(H2 O) HELIX 1 AA1 ASP A 2 ARG A 15 1 14 HELIX 2 AA2 SER A 22 ARG A 40 1 19 HELIX 3 AA3 ARG A 40 TYR A 48 1 9 HELIX 4 AA4 GLN A 51 SER A 64 1 14 HELIX 5 AA5 THR A 71 MET A 80 1 10 HELIX 6 AA6 SER A 82 ALA A 96 1 15 HELIX 7 AA7 THR A 116 SER A 139 1 24 HELIX 8 AA8 SER A 142 ALA A 161 1 20 HELIX 9 AA9 ASP B 2 ARG B 15 1 14 HELIX 10 AB1 SER B 22 ARG B 40 1 19 HELIX 11 AB2 ARG B 40 TYR B 48 1 9 HELIX 12 AB3 GLN B 51 SER B 64 1 14 HELIX 13 AB4 THR B 71 MET B 80 1 10 HELIX 14 AB5 SER B 82 ALA B 96 1 15 HELIX 15 AB6 THR B 116 SER B 139 1 24 HELIX 16 AB7 SER B 142 GLN B 160 1 19 SHEET 1 AA1 3 ALA A 69 LEU A 70 0 SHEET 2 AA1 3 THR A 111 LEU A 115 -1 O VAL A 113 N LEU A 70 SHEET 3 AA1 3 VAL A 99 ALA A 103 -1 N ARG A 102 O LEU A 112 SHEET 1 AA2 3 ALA B 69 LEU B 70 0 SHEET 2 AA2 3 THR B 111 LEU B 115 -1 O VAL B 113 N LEU B 70 SHEET 3 AA2 3 VAL B 99 ALA B 103 -1 N ARG B 102 O LEU B 112 CISPEP 1 ALA A 66 PRO A 67 0 3.63 CISPEP 2 ALA B 66 PRO B 67 0 3.49 CRYST1 62.554 101.580 109.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009160 0.00000