HEADER TRANSCRIPTION 06-MAR-24 8YLH TITLE CRYSTAL STRUCTURE OF PECTOBACTERIUM ATROSEPTICUM PECS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM; SOURCE 3 ORGANISM_TAXID: 29471; SOURCE 4 GENE: PECS, ECA2036; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.S.SONG,S.I.YOON REVDAT 1 13-NOV-24 8YLH 0 JRNL AUTH W.S.SONG,D.U.KI,H.Y.CHO,O.H.KWON,H.CHO,S.I.YOON JRNL TITL STRUCTURAL BASIS OF TRANSCRIPTIONAL REGULATION BY URTR IN JRNL TITL 2 RESPONSE TO URIC ACID. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39484741 JRNL DOI 10.1093/NAR/GKAE922 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 46076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7200 - 3.9100 0.96 2861 125 0.1976 0.1742 REMARK 3 2 3.9100 - 3.1000 0.99 2767 158 0.1894 0.2132 REMARK 3 3 3.1000 - 2.7100 0.99 2812 109 0.2100 0.2399 REMARK 3 4 2.7100 - 2.4600 0.99 2713 170 0.2074 0.2250 REMARK 3 5 2.4600 - 2.2900 1.00 2772 123 0.1944 0.2054 REMARK 3 6 2.2900 - 2.1500 1.00 2760 130 0.1804 0.2047 REMARK 3 7 2.1500 - 2.0400 1.00 2772 122 0.1814 0.1918 REMARK 3 8 2.0400 - 1.9500 1.00 2698 152 0.1900 0.2301 REMARK 3 9 1.9500 - 1.8800 1.00 2736 147 0.2218 0.2566 REMARK 3 10 1.8800 - 1.8100 1.00 2690 187 0.2089 0.2636 REMARK 3 11 1.8100 - 1.7600 1.00 2716 140 0.2100 0.2358 REMARK 3 12 1.7600 - 1.7100 1.00 2731 130 0.2118 0.2469 REMARK 3 13 1.7100 - 1.6600 1.00 2710 140 0.2133 0.2631 REMARK 3 14 1.6600 - 1.6200 1.00 2712 142 0.2133 0.2202 REMARK 3 15 1.6200 - 1.5800 1.00 2712 150 0.2319 0.2279 REMARK 3 16 1.5800 - 1.5500 0.97 2669 120 0.2488 0.2544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.152 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.011 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2586 REMARK 3 ANGLE : 0.779 3527 REMARK 3 CHIRALITY : 0.043 422 REMARK 3 PLANARITY : 0.010 460 REMARK 3 DIHEDRAL : 10.733 990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6361 -17.8948 30.6625 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.0640 REMARK 3 T33: 0.1107 T12: 0.0296 REMARK 3 T13: 0.0088 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.0337 L22: 1.7662 REMARK 3 L33: 8.1381 L12: 1.0764 REMARK 3 L13: 1.6984 L23: -0.8191 REMARK 3 S TENSOR REMARK 3 S11: 0.1070 S12: -0.0038 S13: -0.1838 REMARK 3 S21: -0.0305 S22: -0.0415 S23: -0.0859 REMARK 3 S31: 0.3372 S32: 0.2564 S33: -0.0570 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9470 -9.2303 14.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.1157 REMARK 3 T33: 0.1318 T12: -0.0008 REMARK 3 T13: 0.0068 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.8378 L22: 5.2090 REMARK 3 L33: 5.4702 L12: -3.4079 REMARK 3 L13: 3.4643 L23: -6.1388 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.0640 S13: 0.1414 REMARK 3 S21: -0.0225 S22: -0.1062 S23: -0.2046 REMARK 3 S31: 0.0149 S32: 0.1478 S33: 0.1363 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8312 -2.1606 11.9837 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.0793 REMARK 3 T33: 0.0792 T12: 0.0014 REMARK 3 T13: -0.0112 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.2457 L22: 3.0728 REMARK 3 L33: 2.4777 L12: -0.0206 REMARK 3 L13: -1.0412 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.2163 S13: 0.0240 REMARK 3 S21: 0.1041 S22: 0.0070 S23: -0.0081 REMARK 3 S31: 0.0514 S32: 0.0353 S33: 0.0304 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3211 8.8813 14.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1572 REMARK 3 T33: 0.2667 T12: -0.0305 REMARK 3 T13: -0.0463 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.5154 L22: 6.1641 REMARK 3 L33: 6.0542 L12: 1.4220 REMARK 3 L13: -1.6983 L23: -3.5944 REMARK 3 S TENSOR REMARK 3 S11: 0.1805 S12: -0.2603 S13: 0.1289 REMARK 3 S21: 0.3584 S22: -0.1680 S23: -0.0675 REMARK 3 S31: -0.4318 S32: 0.0123 S33: -0.0225 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3988 7.8242 10.3625 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.2325 REMARK 3 T33: 0.2557 T12: 0.0786 REMARK 3 T13: 0.0534 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: 5.3494 L22: 1.3656 REMARK 3 L33: 5.7730 L12: 1.2120 REMARK 3 L13: -4.5202 L23: -0.6139 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: 0.4090 S13: 0.5276 REMARK 3 S21: 0.4499 S22: 0.3615 S23: 0.4609 REMARK 3 S31: -0.4553 S32: -1.0871 S33: -0.2888 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5290 5.5283 12.9948 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1361 REMARK 3 T33: 0.2583 T12: 0.0054 REMARK 3 T13: 0.0168 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 7.3619 L22: 3.0813 REMARK 3 L33: 8.4279 L12: -1.4334 REMARK 3 L13: -5.7812 L23: 0.4160 REMARK 3 S TENSOR REMARK 3 S11: 0.1447 S12: -0.3040 S13: 0.3938 REMARK 3 S21: 0.1454 S22: 0.2434 S23: 0.4947 REMARK 3 S31: -0.4305 S32: 0.0711 S33: -0.3420 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5895 -7.1158 0.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.1243 REMARK 3 T33: 0.0733 T12: -0.0238 REMARK 3 T13: 0.0115 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 7.5463 L22: 6.0580 REMARK 3 L33: 2.1772 L12: -5.6984 REMARK 3 L13: 2.1175 L23: -1.9965 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.5428 S13: 0.0085 REMARK 3 S21: -0.2830 S22: -0.1889 S23: -0.0784 REMARK 3 S31: 0.0969 S32: 0.1682 S33: 0.0944 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4217 -21.5570 18.0299 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0771 REMARK 3 T33: 0.1424 T12: -0.0151 REMARK 3 T13: -0.0462 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 5.2957 L22: 2.2648 REMARK 3 L33: 7.7400 L12: 1.3117 REMARK 3 L13: -2.1204 L23: -0.4892 REMARK 3 S TENSOR REMARK 3 S11: 0.1278 S12: -0.2027 S13: -0.0835 REMARK 3 S21: 0.0774 S22: 0.0170 S23: 0.1085 REMARK 3 S31: 0.2049 S32: -0.4199 S33: -0.1085 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1115 -14.1902 4.4450 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.0877 REMARK 3 T33: 0.1223 T12: -0.0346 REMARK 3 T13: -0.0315 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.5939 L22: 2.2022 REMARK 3 L33: 6.6951 L12: -1.0537 REMARK 3 L13: 0.3808 L23: 0.2489 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: 0.0269 S13: -0.2097 REMARK 3 S21: -0.2393 S22: 0.0820 S23: 0.1918 REMARK 3 S31: 0.3461 S32: -0.2526 S33: -0.1327 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6354 -10.9359 23.4249 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.1075 REMARK 3 T33: 0.1088 T12: 0.0117 REMARK 3 T13: 0.0171 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3941 L22: 1.6313 REMARK 3 L33: 6.8254 L12: 1.5987 REMARK 3 L13: 3.6631 L23: 3.1652 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.1373 S13: 0.0847 REMARK 3 S21: -0.0245 S22: -0.0091 S23: 0.0800 REMARK 3 S31: -0.1567 S32: -0.1714 S33: 0.0293 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2007 -4.8031 31.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1047 REMARK 3 T33: 0.0959 T12: -0.0168 REMARK 3 T13: 0.0074 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 3.3900 L22: 2.0979 REMARK 3 L33: 1.6165 L12: -0.3774 REMARK 3 L13: 0.7747 L23: -0.7484 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 0.0384 S13: 0.1432 REMARK 3 S21: 0.0989 S22: -0.0596 S23: 0.0205 REMARK 3 S31: -0.0726 S32: 0.0122 S33: -0.0037 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2311 -3.5095 22.3513 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.1561 REMARK 3 T33: 0.1108 T12: 0.0168 REMARK 3 T13: 0.0063 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.7767 L22: 6.5066 REMARK 3 L33: 5.8930 L12: 3.0198 REMARK 3 L13: -1.3337 L23: -0.3951 REMARK 3 S TENSOR REMARK 3 S11: -0.1895 S12: 0.4233 S13: 0.0195 REMARK 3 S21: -0.3180 S22: 0.0586 S23: 0.2153 REMARK 3 S31: -0.0520 S32: -0.1380 S33: 0.1206 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8705 7.0697 28.5448 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1755 REMARK 3 T33: 0.2110 T12: -0.0033 REMARK 3 T13: 0.0184 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.4789 L22: 7.0731 REMARK 3 L33: 2.7152 L12: -0.8793 REMARK 3 L13: 0.7598 L23: 3.1929 REMARK 3 S TENSOR REMARK 3 S11: 0.2184 S12: 0.2674 S13: 0.7355 REMARK 3 S21: -0.0244 S22: -0.0428 S23: 0.0597 REMARK 3 S31: 0.1081 S32: -0.2186 S33: -0.1538 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8753 5.3066 32.9132 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.1675 REMARK 3 T33: 0.2017 T12: -0.0197 REMARK 3 T13: 0.0139 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 8.2541 L22: 2.4206 REMARK 3 L33: 7.0736 L12: -2.0452 REMARK 3 L13: -4.9662 L23: 1.6775 REMARK 3 S TENSOR REMARK 3 S11: 0.3102 S12: -0.3663 S13: 0.5456 REMARK 3 S21: 0.0108 S22: 0.0040 S23: -0.0688 REMARK 3 S31: -0.3437 S32: 0.4622 S33: -0.2735 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8704 3.4940 27.1922 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.2037 REMARK 3 T33: 0.2139 T12: -0.0162 REMARK 3 T13: 0.0289 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 4.3245 L22: 4.2745 REMARK 3 L33: 9.6109 L12: 1.3091 REMARK 3 L13: -6.3920 L23: -2.1135 REMARK 3 S TENSOR REMARK 3 S11: 0.1915 S12: -0.1596 S13: 0.5698 REMARK 3 S21: -0.2353 S22: 0.1274 S23: -0.3850 REMARK 3 S31: -0.1866 S32: 0.3937 S33: -0.3749 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4200 -12.2351 37.3276 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1725 REMARK 3 T33: 0.0798 T12: 0.0042 REMARK 3 T13: 0.0230 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 5.7502 L22: 4.8556 REMARK 3 L33: 2.8945 L12: 4.5859 REMARK 3 L13: 3.3410 L23: 2.6343 REMARK 3 S TENSOR REMARK 3 S11: 0.2469 S12: -0.6083 S13: 0.0192 REMARK 3 S21: 0.3224 S22: -0.3303 S23: 0.0935 REMARK 3 S31: 0.0859 S32: -0.1827 S33: 0.0831 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0163 -21.6709 16.8303 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.1107 REMARK 3 T33: 0.1197 T12: 0.0148 REMARK 3 T13: -0.0447 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 7.5349 L22: 7.5262 REMARK 3 L33: 7.7819 L12: 3.6348 REMARK 3 L13: -4.7003 L23: -5.4294 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.2753 S13: 0.0692 REMARK 3 S21: -0.3171 S22: 0.0929 S23: -0.0220 REMARK 3 S31: 0.2869 S32: 0.2395 S33: -0.1415 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 16 through 33 or REMARK 3 resid 35 through 53 or resid 56 through REMARK 3 57 or resid 60 or resid 62 through 63 or REMARK 3 resid 66 through 80 or resid 82 through REMARK 3 88 or resid 90 through 94 or (resid 95 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 96 through 102 REMARK 3 or (resid 103 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name CD or name CE )) or resid 105 REMARK 3 through 128 or resid 130 through 162 or REMARK 3 resid 164 through 173 or (resid 174 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 175 through 300)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 16 through 21 or REMARK 3 (resid 22 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 23 through 33 or resid 35 through REMARK 3 53 or resid 56 through 57 or resid 60 or REMARK 3 resid 62 through 63 or resid 66 through REMARK 3 80 or resid 82 through 88 or resid 90 REMARK 3 through 103 or resid 105 through 116 or REMARK 3 (resid 117 through 118 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 119 through 120 or (resid 121 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 122 through 128 REMARK 3 or resid 130 through 162 or resid 164 REMARK 3 through 169 or (resid 170 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD )) or resid 171 REMARK 3 through 300)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 8YLF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, MAGNESIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.32550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.18350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.32550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.18350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 ASN A 176 REMARK 465 LYS A 177 REMARK 465 GLY A 178 REMARK 465 ASN A 179 REMARK 465 SER B 10 REMARK 465 ALA B 11 REMARK 465 LYS B 12 REMARK 465 ASP B 13 REMARK 465 LEU B 14 REMARK 465 ASP B 15 REMARK 465 ASN B 176 REMARK 465 LYS B 177 REMARK 465 GLY B 178 REMARK 465 ASN B 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 LEU A 118 CG CD1 CD2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 GLU B 54 CD OE1 OE2 REMARK 470 SER B 95 OG REMARK 470 LYS B 103 NZ REMARK 470 GLU B 117 CD OE1 OE2 REMARK 470 ARG B 121 CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 SER B 174 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 87.92 -169.89 REMARK 500 ASP A 119 103.58 -160.57 REMARK 500 SER B 95 87.96 -168.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YLH A 15 179 UNP Q6D5K4 Q6D5K4_PECAS 15 179 DBREF 8YLH B 15 179 UNP Q6D5K4 Q6D5K4_PECAS 15 179 SEQADV 8YLH SER A 10 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH ALA A 11 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH LYS A 12 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH ASP A 13 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH LEU A 14 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH SER B 10 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH ALA B 11 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH LYS B 12 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH ASP B 13 UNP Q6D5K4 EXPRESSION TAG SEQADV 8YLH LEU B 14 UNP Q6D5K4 EXPRESSION TAG SEQRES 1 A 170 SER ALA LYS ASP LEU ASP ALA VAL ASP ALA ILE LEU GLU SEQRES 2 A 170 GLN TRP ARG ARG GLU ARG PRO ASP LEU ASP ALA SER PRO SEQRES 3 A 170 MET GLY PRO ILE GLY ARG LEU ARG ARG CYS ALA VAL LEU SEQRES 4 A 170 MET ASP GLN ARG LEU GLU SER CYS PHE SER ARG PHE ASP SEQRES 5 A 170 LEU SER SER TRP GLU PHE ASP MET LEU ALA THR LEU ARG SEQRES 6 A 170 ARG ALA GLY ALA PRO HIS CYS LEU SER PRO THR GLU LEU SEQRES 7 A 170 PHE SER THR LEU MET VAL THR SER GLY THR MET THR HIS SEQRES 8 A 170 ARG LEU LYS ARG LEU GLU THR ARG GLY PHE ILE GLU ARG SEQRES 9 A 170 VAL GLN ASN GLU LEU ASP ALA ARG SER THR LEU VAL GLN SEQRES 10 A 170 LEU THR SER SER GLY LEU GLU LEU ILE ASN ARG ALA VAL SEQRES 11 A 170 GLU ALA HIS ILE GLU ASN GLU ARG GLN VAL LEU SER VAL SEQRES 12 A 170 LEU PRO ALA GLU VAL LEU ALA ALA LEU ASP THR ASN LEU SEQRES 13 A 170 ALA ALA LEU LEU ARG GLY LEU GLU SER HIS ASN LYS GLY SEQRES 14 A 170 ASN SEQRES 1 B 170 SER ALA LYS ASP LEU ASP ALA VAL ASP ALA ILE LEU GLU SEQRES 2 B 170 GLN TRP ARG ARG GLU ARG PRO ASP LEU ASP ALA SER PRO SEQRES 3 B 170 MET GLY PRO ILE GLY ARG LEU ARG ARG CYS ALA VAL LEU SEQRES 4 B 170 MET ASP GLN ARG LEU GLU SER CYS PHE SER ARG PHE ASP SEQRES 5 B 170 LEU SER SER TRP GLU PHE ASP MET LEU ALA THR LEU ARG SEQRES 6 B 170 ARG ALA GLY ALA PRO HIS CYS LEU SER PRO THR GLU LEU SEQRES 7 B 170 PHE SER THR LEU MET VAL THR SER GLY THR MET THR HIS SEQRES 8 B 170 ARG LEU LYS ARG LEU GLU THR ARG GLY PHE ILE GLU ARG SEQRES 9 B 170 VAL GLN ASN GLU LEU ASP ALA ARG SER THR LEU VAL GLN SEQRES 10 B 170 LEU THR SER SER GLY LEU GLU LEU ILE ASN ARG ALA VAL SEQRES 11 B 170 GLU ALA HIS ILE GLU ASN GLU ARG GLN VAL LEU SER VAL SEQRES 12 B 170 LEU PRO ALA GLU VAL LEU ALA ALA LEU ASP THR ASN LEU SEQRES 13 B 170 ALA ALA LEU LEU ARG GLY LEU GLU SER HIS ASN LYS GLY SEQRES 14 B 170 ASN HET CL A 300 1 HET CL B 300 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *152(H2 O) HELIX 1 AA1 ASP A 15 ARG A 28 1 14 HELIX 2 AA2 PRO A 35 ARG A 59 1 25 HELIX 3 AA3 SER A 63 ALA A 76 1 14 HELIX 4 AA4 SER A 83 LEU A 91 1 9 HELIX 5 AA5 MET A 98 ARG A 108 1 11 HELIX 6 AA6 THR A 128 SER A 151 1 24 HELIX 7 AA7 PRO A 154 SER A 174 1 21 HELIX 8 AA8 VAL B 17 ARG B 28 1 12 HELIX 9 AA9 PRO B 35 SER B 58 1 24 HELIX 10 AB1 ARG B 59 ASP B 61 5 3 HELIX 11 AB2 SER B 63 ALA B 76 1 14 HELIX 12 AB3 SER B 83 LEU B 91 1 9 HELIX 13 AB4 MET B 98 ARG B 108 1 11 HELIX 14 AB5 THR B 128 SER B 151 1 24 HELIX 15 AB6 PRO B 154 HIS B 175 1 22 SHEET 1 AA1 3 CYS A 81 LEU A 82 0 SHEET 2 AA1 3 ASP A 119 LEU A 127 -1 O VAL A 125 N LEU A 82 SHEET 3 AA1 3 ILE A 111 ASN A 116 -1 N VAL A 114 O LEU A 124 SHEET 1 AA2 3 CYS B 81 LEU B 82 0 SHEET 2 AA2 3 ASP B 119 LEU B 127 -1 O VAL B 125 N LEU B 82 SHEET 3 AA2 3 ILE B 111 ASN B 116 -1 N VAL B 114 O LEU B 124 CISPEP 1 ALA A 78 PRO A 79 0 5.36 CISPEP 2 ALA B 78 PRO B 79 0 6.55 CRYST1 52.350 76.367 78.651 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019102 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012714 0.00000 MTRIX1 1 -0.999944 0.000883 -0.010581 -0.32440 1 MTRIX2 1 -0.001950 0.964316 0.264745 -5.37016 1 MTRIX3 1 0.010437 0.264751 -0.964260 39.75111 1