HEADER PROTEIN BINDING 08-MAR-24 8YM2 TITLE CRYSTAL STRUCTURE OF AIDA-1 PTB DOMAIN IN COMPLEX WITH SYNGAP NPXF TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING COMPND 3 PROTEIN 1B; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PTB DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAS/RAP GTPASE-ACTIVATING PROTEIN SYNGAP; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: NPXF MOTIF; COMPND 11 SYNONYM: NEURONAL RASGAP,SYNAPTIC RAS GTPASE-ACTIVATING PROTEIN 1, COMPND 12 SYNAPTIC RAS-GAP 1,P135 SYNGAP; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ANKS1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: NORWAY RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS AIDA-1, ANKS1B, SYNGAP, RAS AND RAB INTERACTOR, PTB DOMAIN, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,Y.WANG,Q.CAI,M.ZHANG REVDAT 2 05-JUN-24 8YM2 1 JRNL REVDAT 1 29-MAY-24 8YM2 0 JRNL AUTH X.WANG,Y.WANG,Q.CAI,M.ZHANG JRNL TITL AIDA-1/ANKS1B BINDS TO THE SYNGAP FAMILY RASGAPS WITH HIGH JRNL TITL 2 AFFINITY AND SPECIFICITY. JRNL REF J.MOL.BIOL. V. 436 68608 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38759928 JRNL DOI 10.1016/J.JMB.2024.168608 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 15191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 750 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1292 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1173 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1744 ; 1.365 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2741 ; 0.483 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 155 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 3 ; 6.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 223 ;19.221 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1419 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 253 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 629 ; 4.740 ; 5.449 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 629 ; 4.735 ; 5.449 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 778 ; 6.601 ; 8.088 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 779 ; 6.597 ; 8.089 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 663 ; 5.709 ; 5.991 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 664 ; 5.706 ; 5.991 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 966 ; 8.265 ; 8.725 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5210 ;12.448 ;08.324 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5203 ;12.433 ;08.140 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8YM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : LN2-COOLED DCM WITH SI(111) REMARK 200 CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.00 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 40.60 REMARK 200 R MERGE FOR SHELL (I) : 2.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ITU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M (NH4)2SO4, 10% 1,4-DIOXANE, AND REMARK 280 0.1 M MES AT PH 7.1, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.45950 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.45950 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.45950 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.45950 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 56.45950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 56.45950 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 56.45950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.45950 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 56.45950 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 56.45950 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 56.45950 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 56.45950 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 56.45950 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 56.45950 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 56.45950 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 56.45950 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 56.45950 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 56.45950 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 56.45950 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 56.45950 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 56.45950 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 56.45950 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 56.45950 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 56.45950 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 56.45950 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 56.45950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1028 REMARK 465 PRO A 1029 REMARK 465 GLY A 1030 REMARK 465 SER A 1031 REMARK 465 ASN A 1032 REMARK 465 GLU A 1033 REMARK 465 ALA A 1034 REMARK 465 LEU A 1070 REMARK 465 ARG A 1071 REMARK 465 THR A 1091 REMARK 465 GLU A 1092 REMARK 465 LEU A 1148 REMARK 465 LYS A 1149 REMARK 465 HIS B 933 REMARK 465 MET B 934 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1211 O HOH A 1216 20545 2.05 REMARK 500 O HOH A 1220 O HOH A 1221 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1036 7.18 55.81 REMARK 500 ALA A1121 138.34 -170.05 REMARK 500 ASN A1151 21.79 -140.14 REMARK 500 ASP A1162 145.65 -174.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YM2 A 1032 1189 UNP Q8BZM2 Q8BZM2_MOUSE 241 398 DBREF 8YM2 B 924 934 UNP Q9QUH6 SYGP1_RAT 924 934 SEQADV 8YM2 GLY A 1028 UNP Q8BZM2 EXPRESSION TAG SEQADV 8YM2 PRO A 1029 UNP Q8BZM2 EXPRESSION TAG SEQADV 8YM2 GLY A 1030 UNP Q8BZM2 EXPRESSION TAG SEQADV 8YM2 SER A 1031 UNP Q8BZM2 EXPRESSION TAG SEQRES 1 A 162 GLY PRO GLY SER ASN GLU ALA THR ALA SER THR PRO VAL SEQRES 2 A 162 GLN TYR TRP GLN HIS HIS PRO GLU LYS LEU ILE PHE GLN SEQRES 3 A 162 SER CYS ASP TYR LYS ALA PHE TYR LEU GLY SER MET LEU SEQRES 4 A 162 ILE LYS GLU LEU ARG GLY THR GLU SER THR GLN ASP ALA SEQRES 5 A 162 CYS ALA LYS MET ARG ALA ASN CYS GLN LYS SER THR GLU SEQRES 6 A 162 GLN MET LYS LYS VAL PRO THR ILE ILE LEU SER VAL SER SEQRES 7 A 162 TYR LYS GLY VAL LYS PHE ILE ASP ALA ALA ASN LYS ASN SEQRES 8 A 162 ILE ILE ALA GLU HIS GLU ILE ARG ASN ILE SER CYS ALA SEQRES 9 A 162 ALA GLN ASP PRO GLU ASP LEU SER THR PHE ALA TYR ILE SEQRES 10 A 162 THR LYS ASP LEU LYS SER ASN HIS HIS TYR CYS HIS VAL SEQRES 11 A 162 PHE THR ALA PHE ASP VAL ASN LEU ALA TYR GLU ILE ILE SEQRES 12 A 162 LEU THR LEU GLY GLN ALA PHE GLU VAL ALA TYR GLN LEU SEQRES 13 A 162 ALA LEU GLN ALA ARG LYS SEQRES 1 B 11 PRO LEU SER PHE GLN ASN PRO LEU PHE HIS MET FORMUL 3 HOH *30(H2 O) HELIX 1 AA1 PRO A 1039 TRP A 1043 5 5 HELIX 2 AA2 PRO A 1047 PHE A 1052 1 6 HELIX 3 AA3 THR A 1073 GLN A 1088 1 16 HELIX 4 AA4 ASP A 1162 GLN A 1186 1 25 SHEET 1 AA1 8 ILE A1119 GLU A1124 0 SHEET 2 AA1 8 GLY A1108 ASP A1113 -1 N VAL A1109 O HIS A1123 SHEET 3 AA1 8 THR A1099 SER A1105 -1 N SER A1103 O LYS A1110 SHEET 4 AA1 8 CYS A1055 ILE A1067 -1 N TYR A1057 O LEU A1102 SHEET 5 AA1 8 HIS A1153 THR A1159 -1 O HIS A1153 N ILE A1067 SHEET 6 AA1 8 THR A1140 LYS A1146 -1 N PHE A1141 O PHE A1158 SHEET 7 AA1 8 ILE A1128 GLN A1133 -1 N ALA A1132 O ALA A1142 SHEET 8 AA1 8 SER B 926 GLN B 928 -1 O PHE B 927 N ALA A1131 CRYST1 112.919 112.919 112.919 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008856 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008856 0.00000