data_8YMD
#
_entry.id 8YMD
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.399
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 8YMD pdb_00008ymd 10.2210/pdb8ymd/pdb
WWPDB D_1300045942 ? ?
#
_pdbx_audit_revision_history.ordinal 1
_pdbx_audit_revision_history.data_content_type 'Structure model'
_pdbx_audit_revision_history.major_revision 1
_pdbx_audit_revision_history.minor_revision 0
_pdbx_audit_revision_history.revision_date 2025-02-12
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 8YMD
_pdbx_database_status.recvd_initial_deposition_date 2024-03-09
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email sujy100@nenu.edu.cn
_pdbx_contact_author.name_first Jiyong
_pdbx_contact_author.name_last Su
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0001-8406-1676
#
_audit_author.name 'Su, J.Y.'
_audit_author.pdbx_ordinal 1
_audit_author.identifier_ORCID ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Carbohydr Polym'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1879-1344
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 345
_citation.language ?
_citation.page_first 122551
_citation.page_last 122551
_citation.title
'Oligosaccharides from Stellaria dichotoma L. var. lanceolate bind to galectin-3 and ameliorate effects of colitis.'
_citation.year 2024
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1016/j.carbpol.2024.122551
_citation.pdbx_database_id_PubMed 39227094
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Zhao, Z.' 1 ?
primary 'Wu, J.' 2 ?
primary 'Xu, X.' 3 ?
primary 'He, Z.' 4 ?
primary 'Wang, X.' 5 ?
primary 'Su, J.' 6 ?
primary 'Mayo, K.H.' 7 ?
primary 'Sun, L.' 8 ?
primary 'Cui, L.' 9 ?
primary 'Zhou, Y.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man Galectin-3
15829.177 1 ? ? ? ?
2 branched syn 'alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-[alpha-D-galactopyranose-(1-1)]beta-D-fructofuranose'
666.578 1 ? ? ? ?
3 water nat water
18.015 248 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
;Gal-3,35 kDa lectin,Carbohydrate-binding protein 35,CBP 35,Galactose-specific lectin 3,Galactoside-binding protein,GALBP,IgE-binding protein,L-31,Laminin-binding protein,Lectin L-29,Mac-2 antigen
;
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;AGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVF
PFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
;
_entity_poly.pdbx_seq_one_letter_code_can
;AGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVF
PFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 3
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ALA n
1 2 GLY n
1 3 PRO n
1 4 LEU n
1 5 ILE n
1 6 VAL n
1 7 PRO n
1 8 TYR n
1 9 ASN n
1 10 LEU n
1 11 PRO n
1 12 LEU n
1 13 PRO n
1 14 GLY n
1 15 GLY n
1 16 VAL n
1 17 VAL n
1 18 PRO n
1 19 ARG n
1 20 MET n
1 21 LEU n
1 22 ILE n
1 23 THR n
1 24 ILE n
1 25 LEU n
1 26 GLY n
1 27 THR n
1 28 VAL n
1 29 LYS n
1 30 PRO n
1 31 ASN n
1 32 ALA n
1 33 ASN n
1 34 ARG n
1 35 ILE n
1 36 ALA n
1 37 LEU n
1 38 ASP n
1 39 PHE n
1 40 GLN n
1 41 ARG n
1 42 GLY n
1 43 ASN n
1 44 ASP n
1 45 VAL n
1 46 ALA n
1 47 PHE n
1 48 HIS n
1 49 PHE n
1 50 ASN n
1 51 PRO n
1 52 ARG n
1 53 PHE n
1 54 ASN n
1 55 GLU n
1 56 ASN n
1 57 ASN n
1 58 ARG n
1 59 ARG n
1 60 VAL n
1 61 ILE n
1 62 VAL n
1 63 CYS n
1 64 ASN n
1 65 THR n
1 66 LYS n
1 67 LEU n
1 68 ASP n
1 69 ASN n
1 70 ASN n
1 71 TRP n
1 72 GLY n
1 73 ARG n
1 74 GLU n
1 75 GLU n
1 76 ARG n
1 77 GLN n
1 78 SER n
1 79 VAL n
1 80 PHE n
1 81 PRO n
1 82 PHE n
1 83 GLU n
1 84 SER n
1 85 GLY n
1 86 LYS n
1 87 PRO n
1 88 PHE n
1 89 LYS n
1 90 ILE n
1 91 GLN n
1 92 VAL n
1 93 LEU n
1 94 VAL n
1 95 GLU n
1 96 PRO n
1 97 ASP n
1 98 HIS n
1 99 PHE n
1 100 LYS n
1 101 VAL n
1 102 ALA n
1 103 VAL n
1 104 ASN n
1 105 ASP n
1 106 ALA n
1 107 HIS n
1 108 LEU n
1 109 LEU n
1 110 GLN n
1 111 TYR n
1 112 ASN n
1 113 HIS n
1 114 ARG n
1 115 VAL n
1 116 LYS n
1 117 LYS n
1 118 LEU n
1 119 ASN n
1 120 GLU n
1 121 ILE n
1 122 SER n
1 123 LYS n
1 124 LEU n
1 125 GLY n
1 126 ILE n
1 127 SER n
1 128 GLY n
1 129 ASP n
1 130 ILE n
1 131 ASP n
1 132 LEU n
1 133 THR n
1 134 SER n
1 135 ALA n
1 136 SER n
1 137 TYR n
1 138 THR n
1 139 MET n
1 140 ILE n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 140
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'LGALS3, MAC2'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'DGalpa1-6DGlcpa1-2[DGalpa1-1]DFrufb' 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/3,4,3/[ha122h-2b_2-5][a2112h-1a_1-5][a2122h-1a_1-5]/1-2-3-2/a1-b1_a2-c1_c6-d1' WURCS
PDB2Glycan 1.1.0
3 2 '[][b-D-Fruf]{[(2+1)][a-D-Glcp]{[(6+1)][a-D-Galp]{}}}' LINUCS PDB-CARE
?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 GLC C1 O1 1 FRU O2 HO2 sing ?
2 2 3 GLA C1 O1 2 GLC O6 HO6 sing ?
3 2 4 GLA C1 O1 1 FRU O1 HO1 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ?
'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ?
'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ?
'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ?
'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ?
'C3 H7 N O2 S' 121.158
FRU 'D-saccharide, beta linking' . beta-D-fructofuranose 'beta-D-fructose; D-fructose; fructose'
'C6 H12 O6' 180.156
GLA 'D-saccharide, alpha linking' . alpha-D-galactopyranose 'alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE'
'C6 H12 O6' 180.156
GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose'
'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ?
'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ?
'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ?
'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ?
'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O'
18.015
ILE 'L-peptide linking' y ISOLEUCINE ?
'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ?
'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ?
'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ?
'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ?
'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ?
'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ?
'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ?
'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ?
'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ?
'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ?
'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb
FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose
FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf
FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru
GLA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpa
GLA 'COMMON NAME' GMML 1.0 a-D-galactopyranose
GLA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Galp
GLA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa
GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose
GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp
GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ALA 1 111 ? ? ? A . n
A 1 2 GLY 2 112 ? ? ? A . n
A 1 3 PRO 3 113 113 PRO PRO A . n
A 1 4 LEU 4 114 114 LEU LEU A . n
A 1 5 ILE 5 115 115 ILE ILE A . n
A 1 6 VAL 6 116 116 VAL VAL A . n
A 1 7 PRO 7 117 117 PRO PRO A . n
A 1 8 TYR 8 118 118 TYR TYR A . n
A 1 9 ASN 9 119 119 ASN ASN A . n
A 1 10 LEU 10 120 120 LEU LEU A . n
A 1 11 PRO 11 121 121 PRO PRO A . n
A 1 12 LEU 12 122 122 LEU LEU A . n
A 1 13 PRO 13 123 123 PRO PRO A . n
A 1 14 GLY 14 124 124 GLY GLY A . n
A 1 15 GLY 15 125 125 GLY GLY A . n
A 1 16 VAL 16 126 126 VAL VAL A . n
A 1 17 VAL 17 127 127 VAL VAL A . n
A 1 18 PRO 18 128 128 PRO PRO A . n
A 1 19 ARG 19 129 129 ARG ARG A . n
A 1 20 MET 20 130 130 MET MET A . n
A 1 21 LEU 21 131 131 LEU LEU A . n
A 1 22 ILE 22 132 132 ILE ILE A . n
A 1 23 THR 23 133 133 THR THR A . n
A 1 24 ILE 24 134 134 ILE ILE A . n
A 1 25 LEU 25 135 135 LEU LEU A . n
A 1 26 GLY 26 136 136 GLY GLY A . n
A 1 27 THR 27 137 137 THR THR A . n
A 1 28 VAL 28 138 138 VAL VAL A . n
A 1 29 LYS 29 139 139 LYS LYS A . n
A 1 30 PRO 30 140 140 PRO PRO A . n
A 1 31 ASN 31 141 141 ASN ASN A . n
A 1 32 ALA 32 142 142 ALA ALA A . n
A 1 33 ASN 33 143 143 ASN ASN A . n
A 1 34 ARG 34 144 144 ARG ARG A . n
A 1 35 ILE 35 145 145 ILE ILE A . n
A 1 36 ALA 36 146 146 ALA ALA A . n
A 1 37 LEU 37 147 147 LEU LEU A . n
A 1 38 ASP 38 148 148 ASP ASP A . n
A 1 39 PHE 39 149 149 PHE PHE A . n
A 1 40 GLN 40 150 150 GLN GLN A . n
A 1 41 ARG 41 151 151 ARG ARG A . n
A 1 42 GLY 42 152 152 GLY GLY A . n
A 1 43 ASN 43 153 153 ASN ASN A . n
A 1 44 ASP 44 154 154 ASP ASP A . n
A 1 45 VAL 45 155 155 VAL VAL A . n
A 1 46 ALA 46 156 156 ALA ALA A . n
A 1 47 PHE 47 157 157 PHE PHE A . n
A 1 48 HIS 48 158 158 HIS HIS A . n
A 1 49 PHE 49 159 159 PHE PHE A . n
A 1 50 ASN 50 160 160 ASN ASN A . n
A 1 51 PRO 51 161 161 PRO PRO A . n
A 1 52 ARG 52 162 162 ARG ARG A . n
A 1 53 PHE 53 163 163 PHE PHE A . n
A 1 54 ASN 54 164 164 ASN ASN A . n
A 1 55 GLU 55 165 165 GLU GLU A . n
A 1 56 ASN 56 166 166 ASN ASN A . n
A 1 57 ASN 57 167 167 ASN ASN A . n
A 1 58 ARG 58 168 168 ARG ARG A . n
A 1 59 ARG 59 169 169 ARG ARG A . n
A 1 60 VAL 60 170 170 VAL VAL A . n
A 1 61 ILE 61 171 171 ILE ILE A . n
A 1 62 VAL 62 172 172 VAL VAL A . n
A 1 63 CYS 63 173 173 CYS CYS A . n
A 1 64 ASN 64 174 174 ASN ASN A . n
A 1 65 THR 65 175 175 THR THR A . n
A 1 66 LYS 66 176 176 LYS LYS A . n
A 1 67 LEU 67 177 177 LEU LEU A . n
A 1 68 ASP 68 178 178 ASP ASP A . n
A 1 69 ASN 69 179 179 ASN ASN A . n
A 1 70 ASN 70 180 180 ASN ASN A . n
A 1 71 TRP 71 181 181 TRP TRP A . n
A 1 72 GLY 72 182 182 GLY GLY A . n
A 1 73 ARG 73 183 183 ARG ARG A . n
A 1 74 GLU 74 184 184 GLU GLU A . n
A 1 75 GLU 75 185 185 GLU GLU A . n
A 1 76 ARG 76 186 186 ARG ARG A . n
A 1 77 GLN 77 187 187 GLN GLN A . n
A 1 78 SER 78 188 188 SER SER A . n
A 1 79 VAL 79 189 189 VAL VAL A . n
A 1 80 PHE 80 190 190 PHE PHE A . n
A 1 81 PRO 81 191 191 PRO PRO A . n
A 1 82 PHE 82 192 192 PHE PHE A . n
A 1 83 GLU 83 193 193 GLU GLU A . n
A 1 84 SER 84 194 194 SER SER A . n
A 1 85 GLY 85 195 195 GLY GLY A . n
A 1 86 LYS 86 196 196 LYS LYS A . n
A 1 87 PRO 87 197 197 PRO PRO A . n
A 1 88 PHE 88 198 198 PHE PHE A . n
A 1 89 LYS 89 199 199 LYS LYS A . n
A 1 90 ILE 90 200 200 ILE ILE A . n
A 1 91 GLN 91 201 201 GLN GLN A . n
A 1 92 VAL 92 202 202 VAL VAL A . n
A 1 93 LEU 93 203 203 LEU LEU A . n
A 1 94 VAL 94 204 204 VAL VAL A . n
A 1 95 GLU 95 205 205 GLU GLU A . n
A 1 96 PRO 96 206 206 PRO PRO A . n
A 1 97 ASP 97 207 207 ASP ASP A . n
A 1 98 HIS 98 208 208 HIS HIS A . n
A 1 99 PHE 99 209 209 PHE PHE A . n
A 1 100 LYS 100 210 210 LYS LYS A . n
A 1 101 VAL 101 211 211 VAL VAL A . n
A 1 102 ALA 102 212 212 ALA ALA A . n
A 1 103 VAL 103 213 213 VAL VAL A . n
A 1 104 ASN 104 214 214 ASN ASN A . n
A 1 105 ASP 105 215 215 ASP ASP A . n
A 1 106 ALA 106 216 216 ALA ALA A . n
A 1 107 HIS 107 217 217 HIS HIS A . n
A 1 108 LEU 108 218 218 LEU LEU A . n
A 1 109 LEU 109 219 219 LEU LEU A . n
A 1 110 GLN 110 220 220 GLN GLN A . n
A 1 111 TYR 111 221 221 TYR TYR A . n
A 1 112 ASN 112 222 222 ASN ASN A . n
A 1 113 HIS 113 223 223 HIS HIS A . n
A 1 114 ARG 114 224 224 ARG ARG A . n
A 1 115 VAL 115 225 225 VAL VAL A . n
A 1 116 LYS 116 226 226 LYS LYS A . n
A 1 117 LYS 117 227 227 LYS LYS A . n
A 1 118 LEU 118 228 228 LEU LEU A . n
A 1 119 ASN 119 229 229 ASN ASN A . n
A 1 120 GLU 120 230 230 GLU GLU A . n
A 1 121 ILE 121 231 231 ILE ILE A . n
A 1 122 SER 122 232 232 SER SER A . n
A 1 123 LYS 123 233 233 LYS LYS A . n
A 1 124 LEU 124 234 234 LEU LEU A . n
A 1 125 GLY 125 235 235 GLY GLY A . n
A 1 126 ILE 126 236 236 ILE ILE A . n
A 1 127 SER 127 237 237 SER SER A . n
A 1 128 GLY 128 238 238 GLY GLY A . n
A 1 129 ASP 129 239 239 ASP ASP A . n
A 1 130 ILE 130 240 240 ILE ILE A . n
A 1 131 ASP 131 241 241 ASP ASP A . n
A 1 132 LEU 132 242 242 LEU LEU A . n
A 1 133 THR 133 243 243 THR THR A . n
A 1 134 SER 134 244 244 SER SER A . n
A 1 135 ALA 135 245 245 ALA ALA A . n
A 1 136 SER 136 246 246 SER SER A . n
A 1 137 TYR 137 247 247 TYR TYR A . n
A 1 138 THR 138 248 248 THR THR A . n
A 1 139 MET 139 249 249 MET MET A . n
A 1 140 ILE 140 250 250 ILE ILE A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 FRU 1 B FRU 1 A LIG 301 n
B 2 GLC 2 B GLC 2 A LIG 301 n
B 2 GLA 3 B GLA 3 A LIG 301 n
B 2 GLA 4 B GLA 4 A LIG 301 n
#
loop_
_pdbx_entity_instance_feature.ordinal
_pdbx_entity_instance_feature.comp_id
_pdbx_entity_instance_feature.asym_id
_pdbx_entity_instance_feature.seq_num
_pdbx_entity_instance_feature.auth_comp_id
_pdbx_entity_instance_feature.auth_asym_id
_pdbx_entity_instance_feature.auth_seq_num
_pdbx_entity_instance_feature.feature_type
_pdbx_entity_instance_feature.details
1 FRU ? ? FRU ? ? 'SUBJECT OF INVESTIGATION' ?
2 GLC ? ? GLC ? ? 'SUBJECT OF INVESTIGATION' ?
3 GLA ? ? GLA ? ? 'SUBJECT OF INVESTIGATION' ?
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HOH 1 301 229 HOH HOH A .
C 3 HOH 2 302 189 HOH HOH A .
C 3 HOH 3 303 68 HOH HOH A .
C 3 HOH 4 304 200 HOH HOH A .
C 3 HOH 5 305 136 HOH HOH A .
C 3 HOH 6 306 9 HOH HOH A .
C 3 HOH 7 307 54 HOH HOH A .
C 3 HOH 8 308 157 HOH HOH A .
C 3 HOH 9 309 197 HOH HOH A .
C 3 HOH 10 310 4 HOH HOH A .
C 3 HOH 11 311 30 HOH HOH A .
C 3 HOH 12 312 165 HOH HOH A .
C 3 HOH 13 313 81 HOH HOH A .
C 3 HOH 14 314 213 HOH HOH A .
C 3 HOH 15 315 137 HOH HOH A .
C 3 HOH 16 316 42 HOH HOH A .
C 3 HOH 17 317 141 HOH HOH A .
C 3 HOH 18 318 86 HOH HOH A .
C 3 HOH 19 319 109 HOH HOH A .
C 3 HOH 20 320 55 HOH HOH A .
C 3 HOH 21 321 34 HOH HOH A .
C 3 HOH 22 322 134 HOH HOH A .
C 3 HOH 23 323 224 HOH HOH A .
C 3 HOH 24 324 21 HOH HOH A .
C 3 HOH 25 325 182 HOH HOH A .
C 3 HOH 26 326 47 HOH HOH A .
C 3 HOH 27 327 50 HOH HOH A .
C 3 HOH 28 328 131 HOH HOH A .
C 3 HOH 29 329 78 HOH HOH A .
C 3 HOH 30 330 110 HOH HOH A .
C 3 HOH 31 331 25 HOH HOH A .
C 3 HOH 32 332 199 HOH HOH A .
C 3 HOH 33 333 23 HOH HOH A .
C 3 HOH 34 334 65 HOH HOH A .
C 3 HOH 35 335 51 HOH HOH A .
C 3 HOH 36 336 14 HOH HOH A .
C 3 HOH 37 337 149 HOH HOH A .
C 3 HOH 38 338 135 HOH HOH A .
C 3 HOH 39 339 122 HOH HOH A .
C 3 HOH 40 340 62 HOH HOH A .
C 3 HOH 41 341 61 HOH HOH A .
C 3 HOH 42 342 59 HOH HOH A .
C 3 HOH 43 343 32 HOH HOH A .
C 3 HOH 44 344 36 HOH HOH A .
C 3 HOH 45 345 67 HOH HOH A .
C 3 HOH 46 346 154 HOH HOH A .
C 3 HOH 47 347 77 HOH HOH A .
C 3 HOH 48 348 206 HOH HOH A .
C 3 HOH 49 349 40 HOH HOH A .
C 3 HOH 50 350 5 HOH HOH A .
C 3 HOH 51 351 153 HOH HOH A .
C 3 HOH 52 352 8 HOH HOH A .
C 3 HOH 53 353 69 HOH HOH A .
C 3 HOH 54 354 48 HOH HOH A .
C 3 HOH 55 355 129 HOH HOH A .
C 3 HOH 56 356 12 HOH HOH A .
C 3 HOH 57 357 158 HOH HOH A .
C 3 HOH 58 358 169 HOH HOH A .
C 3 HOH 59 359 231 HOH HOH A .
C 3 HOH 60 360 108 HOH HOH A .
C 3 HOH 61 361 186 HOH HOH A .
C 3 HOH 62 362 2 HOH HOH A .
C 3 HOH 63 363 24 HOH HOH A .
C 3 HOH 64 364 145 HOH HOH A .
C 3 HOH 65 365 13 HOH HOH A .
C 3 HOH 66 366 101 HOH HOH A .
C 3 HOH 67 367 45 HOH HOH A .
C 3 HOH 68 368 242 HOH HOH A .
C 3 HOH 69 369 163 HOH HOH A .
C 3 HOH 70 370 37 HOH HOH A .
C 3 HOH 71 371 204 HOH HOH A .
C 3 HOH 72 372 106 HOH HOH A .
C 3 HOH 73 373 143 HOH HOH A .
C 3 HOH 74 374 218 HOH HOH A .
C 3 HOH 75 375 20 HOH HOH A .
C 3 HOH 76 376 10 HOH HOH A .
C 3 HOH 77 377 17 HOH HOH A .
C 3 HOH 78 378 63 HOH HOH A .
C 3 HOH 79 379 76 HOH HOH A .
C 3 HOH 80 380 118 HOH HOH A .
C 3 HOH 81 381 3 HOH HOH A .
C 3 HOH 82 382 130 HOH HOH A .
C 3 HOH 83 383 124 HOH HOH A .
C 3 HOH 84 384 52 HOH HOH A .
C 3 HOH 85 385 71 HOH HOH A .
C 3 HOH 86 386 173 HOH HOH A .
C 3 HOH 87 387 46 HOH HOH A .
C 3 HOH 88 388 64 HOH HOH A .
C 3 HOH 89 389 98 HOH HOH A .
C 3 HOH 90 390 38 HOH HOH A .
C 3 HOH 91 391 18 HOH HOH A .
C 3 HOH 92 392 41 HOH HOH A .
C 3 HOH 93 393 72 HOH HOH A .
C 3 HOH 94 394 148 HOH HOH A .
C 3 HOH 95 395 93 HOH HOH A .
C 3 HOH 96 396 104 HOH HOH A .
C 3 HOH 97 397 97 HOH HOH A .
C 3 HOH 98 398 27 HOH HOH A .
C 3 HOH 99 399 16 HOH HOH A .
C 3 HOH 100 400 60 HOH HOH A .
C 3 HOH 101 401 35 HOH HOH A .
C 3 HOH 102 402 19 HOH HOH A .
C 3 HOH 103 403 179 HOH HOH A .
C 3 HOH 104 404 33 HOH HOH A .
C 3 HOH 105 405 75 HOH HOH A .
C 3 HOH 106 406 28 HOH HOH A .
C 3 HOH 107 407 114 HOH HOH A .
C 3 HOH 108 408 140 HOH HOH A .
C 3 HOH 109 409 73 HOH HOH A .
C 3 HOH 110 410 192 HOH HOH A .
C 3 HOH 111 411 216 HOH HOH A .
C 3 HOH 112 412 82 HOH HOH A .
C 3 HOH 113 413 164 HOH HOH A .
C 3 HOH 114 414 83 HOH HOH A .
C 3 HOH 115 415 91 HOH HOH A .
C 3 HOH 116 416 111 HOH HOH A .
C 3 HOH 117 417 7 HOH HOH A .
C 3 HOH 118 418 95 HOH HOH A .
C 3 HOH 119 419 142 HOH HOH A .
C 3 HOH 120 420 139 HOH HOH A .
C 3 HOH 121 421 105 HOH HOH A .
C 3 HOH 122 422 39 HOH HOH A .
C 3 HOH 123 423 115 HOH HOH A .
C 3 HOH 124 424 43 HOH HOH A .
C 3 HOH 125 425 89 HOH HOH A .
C 3 HOH 126 426 90 HOH HOH A .
C 3 HOH 127 427 202 HOH HOH A .
C 3 HOH 128 428 80 HOH HOH A .
C 3 HOH 129 429 155 HOH HOH A .
C 3 HOH 130 430 70 HOH HOH A .
C 3 HOH 131 431 238 HOH HOH A .
C 3 HOH 132 432 151 HOH HOH A .
C 3 HOH 133 433 187 HOH HOH A .
C 3 HOH 134 434 239 HOH HOH A .
C 3 HOH 135 435 240 HOH HOH A .
C 3 HOH 136 436 31 HOH HOH A .
C 3 HOH 137 437 6 HOH HOH A .
C 3 HOH 138 438 227 HOH HOH A .
C 3 HOH 139 439 49 HOH HOH A .
C 3 HOH 140 440 57 HOH HOH A .
C 3 HOH 141 441 79 HOH HOH A .
C 3 HOH 142 442 103 HOH HOH A .
C 3 HOH 143 443 29 HOH HOH A .
C 3 HOH 144 444 15 HOH HOH A .
C 3 HOH 145 445 243 HOH HOH A .
C 3 HOH 146 446 160 HOH HOH A .
C 3 HOH 147 447 228 HOH HOH A .
C 3 HOH 148 448 1 HOH HOH A .
C 3 HOH 149 449 162 HOH HOH A .
C 3 HOH 150 450 112 HOH HOH A .
C 3 HOH 151 451 221 HOH HOH A .
C 3 HOH 152 452 44 HOH HOH A .
C 3 HOH 153 453 219 HOH HOH A .
C 3 HOH 154 454 215 HOH HOH A .
C 3 HOH 155 455 94 HOH HOH A .
C 3 HOH 156 456 205 HOH HOH A .
C 3 HOH 157 457 211 HOH HOH A .
C 3 HOH 158 458 175 HOH HOH A .
C 3 HOH 159 459 125 HOH HOH A .
C 3 HOH 160 460 168 HOH HOH A .
C 3 HOH 161 461 222 HOH HOH A .
C 3 HOH 162 462 171 HOH HOH A .
C 3 HOH 163 463 244 HOH HOH A .
C 3 HOH 164 464 223 HOH HOH A .
C 3 HOH 165 465 96 HOH HOH A .
C 3 HOH 166 466 257 HOH HOH A .
C 3 HOH 167 467 120 HOH HOH A .
C 3 HOH 168 468 138 HOH HOH A .
C 3 HOH 169 469 172 HOH HOH A .
C 3 HOH 170 470 58 HOH HOH A .
C 3 HOH 171 471 146 HOH HOH A .
C 3 HOH 172 472 170 HOH HOH A .
C 3 HOH 173 473 87 HOH HOH A .
C 3 HOH 174 474 236 HOH HOH A .
C 3 HOH 175 475 126 HOH HOH A .
C 3 HOH 176 476 246 HOH HOH A .
C 3 HOH 177 477 99 HOH HOH A .
C 3 HOH 178 478 116 HOH HOH A .
C 3 HOH 179 479 194 HOH HOH A .
C 3 HOH 180 480 128 HOH HOH A .
C 3 HOH 181 481 176 HOH HOH A .
C 3 HOH 182 482 195 HOH HOH A .
C 3 HOH 183 483 251 HOH HOH A .
C 3 HOH 184 484 201 HOH HOH A .
C 3 HOH 185 485 53 HOH HOH A .
C 3 HOH 186 486 84 HOH HOH A .
C 3 HOH 187 487 167 HOH HOH A .
C 3 HOH 188 488 183 HOH HOH A .
C 3 HOH 189 489 11 HOH HOH A .
C 3 HOH 190 490 210 HOH HOH A .
C 3 HOH 191 491 174 HOH HOH A .
C 3 HOH 192 492 214 HOH HOH A .
C 3 HOH 193 493 144 HOH HOH A .
C 3 HOH 194 494 92 HOH HOH A .
C 3 HOH 195 495 225 HOH HOH A .
C 3 HOH 196 496 177 HOH HOH A .
C 3 HOH 197 497 100 HOH HOH A .
C 3 HOH 198 498 188 HOH HOH A .
C 3 HOH 199 499 230 HOH HOH A .
C 3 HOH 200 500 123 HOH HOH A .
C 3 HOH 201 501 85 HOH HOH A .
C 3 HOH 202 502 88 HOH HOH A .
C 3 HOH 203 503 180 HOH HOH A .
C 3 HOH 204 504 258 HOH HOH A .
C 3 HOH 205 505 119 HOH HOH A .
C 3 HOH 206 506 178 HOH HOH A .
C 3 HOH 207 507 26 HOH HOH A .
C 3 HOH 208 508 217 HOH HOH A .
C 3 HOH 209 509 191 HOH HOH A .
C 3 HOH 210 510 254 HOH HOH A .
C 3 HOH 211 511 234 HOH HOH A .
C 3 HOH 212 512 66 HOH HOH A .
C 3 HOH 213 513 235 HOH HOH A .
C 3 HOH 214 514 107 HOH HOH A .
C 3 HOH 215 515 232 HOH HOH A .
C 3 HOH 216 516 161 HOH HOH A .
C 3 HOH 217 517 203 HOH HOH A .
C 3 HOH 218 518 152 HOH HOH A .
C 3 HOH 219 519 250 HOH HOH A .
C 3 HOH 220 520 241 HOH HOH A .
C 3 HOH 221 521 233 HOH HOH A .
C 3 HOH 222 522 159 HOH HOH A .
C 3 HOH 223 523 132 HOH HOH A .
C 3 HOH 224 524 184 HOH HOH A .
C 3 HOH 225 525 133 HOH HOH A .
C 3 HOH 226 526 196 HOH HOH A .
C 3 HOH 227 527 252 HOH HOH A .
C 3 HOH 228 528 127 HOH HOH A .
C 3 HOH 229 529 156 HOH HOH A .
C 3 HOH 230 530 181 HOH HOH A .
C 3 HOH 231 531 256 HOH HOH A .
C 3 HOH 232 532 56 HOH HOH A .
C 3 HOH 233 533 245 HOH HOH A .
C 3 HOH 234 534 117 HOH HOH A .
C 3 HOH 235 535 237 HOH HOH A .
C 3 HOH 236 536 102 HOH HOH A .
C 3 HOH 237 537 248 HOH HOH A .
C 3 HOH 238 538 22 HOH HOH A .
C 3 HOH 239 539 220 HOH HOH A .
C 3 HOH 240 540 121 HOH HOH A .
C 3 HOH 241 541 253 HOH HOH A .
C 3 HOH 242 542 113 HOH HOH A .
C 3 HOH 243 543 255 HOH HOH A .
C 3 HOH 244 544 247 HOH HOH A .
C 3 HOH 245 545 166 HOH HOH A .
C 3 HOH 246 546 209 HOH HOH A .
C 3 HOH 247 547 147 HOH HOH A .
C 3 HOH 248 548 190 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ARG 183 ? CG ? A ARG 73 CG
2 1 Y 1 A ARG 183 ? CD ? A ARG 73 CD
3 1 Y 1 A ARG 183 ? NE ? A ARG 73 NE
4 1 Y 1 A ARG 183 ? CZ ? A ARG 73 CZ
5 1 Y 1 A ARG 183 ? NH1 ? A ARG 73 NH1
6 1 Y 1 A ARG 183 ? NH2 ? A ARG 73 NH2
7 1 Y 1 A LYS 233 ? CG ? A LYS 123 CG
8 1 Y 1 A LYS 233 ? CD ? A LYS 123 CD
9 1 Y 1 A LYS 233 ? CE ? A LYS 123 CE
10 1 Y 1 A LYS 233 ? NZ ? A LYS 123 NZ
#
_software.citation_id ?
_software.classification refinement
_software.compiler_name ?
_software.compiler_version ?
_software.contact_author ?
_software.contact_author_email ?
_software.date ?
_software.description ?
_software.dependencies ?
_software.hardware ?
_software.language ?
_software.location ?
_software.mods ?
_software.name PHENIX
_software.os ?
_software.os_version ?
_software.type ?
_software.version '(1.18.2_3874: ???)'
_software.pdbx_ordinal 1
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 8YMD
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 35.886
_cell.length_a_esd ?
_cell.length_b 57.383
_cell.length_b_esd ?
_cell.length_c 61.716
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 8YMD
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 8YMD
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.01
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 38.72
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details PEG
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.temp 298
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS 6M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2019-10-31
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.id ?
_diffrn_detector.number_of_axes ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9793
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'SSRF BEAMLINE BL18U1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9793
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL18U1
_diffrn_source.pdbx_synchrotron_site SSRF
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 8YMD
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.08
_reflns.d_resolution_low 42.02
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 55329
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 100
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 6.2
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 45.7
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_Rmerge_I_obs 0.049
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_CC_split_method ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
_reflns_shell.d_res_high 1.08
_reflns_shell.d_res_low 1.10
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs 2719
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_CC_star ?
_reflns_shell.pdbx_R_split ?
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.206
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_percent_possible_ellipsoidal ?
_reflns_shell.pdbx_percent_possible_spherical ?
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns_shell.pdbx_percent_possible_spherical_anomalous ?
_reflns_shell.pdbx_redundancy_anomalous ?
_reflns_shell.pdbx_CC_half_anomalous ?
_reflns_shell.pdbx_absDiff_over_sigma_anomalous ?
_reflns_shell.pdbx_percent_possible_anomalous ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 8YMD
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.08
_refine.ls_d_res_low 17.13
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 55199
_refine.ls_number_reflns_R_free 2678
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 98.97
_refine.ls_percent_reflns_R_free 4.85
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1415
_refine.ls_R_factor_R_free 0.1589
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1406
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.38
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.11
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 14.32
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.07
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 1.08
_refine_hist.d_res_low 17.13
_refine_hist.number_atoms_solvent 248
_refine_hist.number_atoms_total 1391
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 1098
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 45
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.010 ? 1172 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.150 ? 1600 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 16.416 ? 149 ? f_dihedral_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.090 ? 190 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.009 ? 202 ? f_plane_restr ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
_refine_ls_shell.R_factor_R_free
'X-RAY DIFFRACTION' 1.08 1.10 . . 108 2224 81.00 . . . . 0.1312 . . . . . . . . . . . 0.1709
'X-RAY DIFFRACTION' 1.10 1.12 . . 125 2777 100.00 . . . . 0.1214 . . . . . . . . . . . 0.1525
'X-RAY DIFFRACTION' 1.12 1.14 . . 157 2719 100.00 . . . . 0.1187 . . . . . . . . . . . 0.1298
'X-RAY DIFFRACTION' 1.14 1.17 . . 155 2762 100.00 . . . . 0.1190 . . . . . . . . . . . 0.1549
'X-RAY DIFFRACTION' 1.17 1.19 . . 134 2745 100.00 . . . . 0.1193 . . . . . . . . . . . 0.1510
'X-RAY DIFFRACTION' 1.19 1.22 . . 137 2746 100.00 . . . . 0.1211 . . . . . . . . . . . 0.1496
'X-RAY DIFFRACTION' 1.22 1.26 . . 157 2765 100.00 . . . . 0.1247 . . . . . . . . . . . 0.1539
'X-RAY DIFFRACTION' 1.26 1.29 . . 130 2772 100.00 . . . . 0.1283 . . . . . . . . . . . 0.1488
'X-RAY DIFFRACTION' 1.29 1.33 . . 140 2788 100.00 . . . . 0.1295 . . . . . . . . . . . 0.1505
'X-RAY DIFFRACTION' 1.33 1.38 . . 124 2783 100.00 . . . . 0.1346 . . . . . . . . . . . 0.1570
'X-RAY DIFFRACTION' 1.38 1.44 . . 137 2796 100.00 . . . . 0.1361 . . . . . . . . . . . 0.1661
'X-RAY DIFFRACTION' 1.44 1.50 . . 136 2788 100.00 . . . . 0.1322 . . . . . . . . . . . 0.1520
'X-RAY DIFFRACTION' 1.50 1.58 . . 152 2770 100.00 . . . . 0.1293 . . . . . . . . . . . 0.1664
'X-RAY DIFFRACTION' 1.58 1.68 . . 154 2758 100.00 . . . . 0.1346 . . . . . . . . . . . 0.1578
'X-RAY DIFFRACTION' 1.68 1.81 . . 138 2819 100.00 . . . . 0.1443 . . . . . . . . . . . 0.1548
'X-RAY DIFFRACTION' 1.81 1.99 . . 113 2857 100.00 . . . . 0.1356 . . . . . . . . . . . 0.1409
'X-RAY DIFFRACTION' 1.99 2.28 . . 161 2814 100.00 . . . . 0.1402 . . . . . . . . . . . 0.1552
'X-RAY DIFFRACTION' 2.28 2.87 . . 131 2886 100.00 . . . . 0.1593 . . . . . . . . . . . 0.1843
'X-RAY DIFFRACTION' 2.87 17.13 . . 189 2952 100.00 . . . . 0.1509 . . . . . . . . . . . 0.1602
#
_struct.entry_id 8YMD
_struct.title 'Galectin-3 with lychnose'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 8YMD
_struct_keywords.text 'Galectin-3 with lychnose, SUGAR BINDING PROTEIN'
_struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code LEG3_HUMAN
_struct_ref.pdbx_db_accession P17931
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;AGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVF
PFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
;
_struct_ref.pdbx_align_begin 111
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 8YMD
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 140
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P17931
_struct_ref_seq.db_align_beg 111
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 250
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 111
_struct_ref_seq.pdbx_auth_seq_align_end 250
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_conf.conf_type_id HELX_P
_struct_conf.id HELX_P1
_struct_conf.pdbx_PDB_helix_id AA1
_struct_conf.beg_label_comp_id LYS
_struct_conf.beg_label_asym_id A
_struct_conf.beg_label_seq_id 117
_struct_conf.pdbx_beg_PDB_ins_code ?
_struct_conf.end_label_comp_id ILE
_struct_conf.end_label_asym_id A
_struct_conf.end_label_seq_id 121
_struct_conf.pdbx_end_PDB_ins_code ?
_struct_conf.beg_auth_comp_id LYS
_struct_conf.beg_auth_asym_id A
_struct_conf.beg_auth_seq_id 227
_struct_conf.end_auth_comp_id ILE
_struct_conf.end_auth_asym_id A
_struct_conf.end_auth_seq_id 231
_struct_conf.pdbx_PDB_helix_class 5
_struct_conf.details ?
_struct_conf.pdbx_PDB_helix_length 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? B FRU . O2 ? ? ? 1_555 B GLC . C1 ? ? B FRU 1 B GLC 2 1_555 ? ? ? ? ? ? ? 1.391 ? ?
covale2 covale both ? B FRU . O1 ? ? ? 1_555 B GLA . C1 ? ? B FRU 1 B GLA 4 1_555 ? ? ? ? ? ? ? 1.380 ? ?
covale3 covale both ? B GLC . O6 ? ? ? 1_555 B GLA . C1 ? ? B GLC 2 B GLA 3 1_555 ? ? ? ? ? ? ? 1.393 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id VAL
_struct_mon_prot_cis.label_seq_id 6
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id VAL
_struct_mon_prot_cis.auth_seq_id 116
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 7
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 117
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle -3.87
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 6 ?
AA2 ? 6 ?
AA3 ? 5 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA1 4 5 ? anti-parallel
AA1 5 6 ? anti-parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? anti-parallel
AA2 3 4 ? anti-parallel
AA2 4 5 ? anti-parallel
AA2 5 6 ? anti-parallel
AA3 1 2 ? anti-parallel
AA3 2 3 ? anti-parallel
AA3 3 4 ? anti-parallel
AA3 4 5 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 TYR A 8 ? PRO A 11 ? TYR A 118 PRO A 121
AA1 2 LYS A 123 ? GLY A 128 ? LYS A 233 GLY A 238
AA1 3 ILE A 35 ? ARG A 41 ? ILE A 145 ARG A 151
AA1 4 ASP A 44 ? GLU A 55 ? ASP A 154 GLU A 165
AA1 5 ARG A 58 ? LEU A 67 ? ARG A 168 LEU A 177
AA1 6 ASN A 70 ? TRP A 71 ? ASN A 180 TRP A 181
AA2 1 TYR A 8 ? PRO A 11 ? TYR A 118 PRO A 121
AA2 2 LYS A 123 ? GLY A 128 ? LYS A 233 GLY A 238
AA2 3 ILE A 35 ? ARG A 41 ? ILE A 145 ARG A 151
AA2 4 ASP A 44 ? GLU A 55 ? ASP A 154 GLU A 165
AA2 5 ARG A 58 ? LEU A 67 ? ARG A 168 LEU A 177
AA2 6 GLU A 75 ? GLN A 77 ? GLU A 185 GLN A 187
AA3 1 ALA A 106 ? ASN A 112 ? ALA A 216 ASN A 222
AA3 2 HIS A 98 ? VAL A 103 ? HIS A 208 VAL A 213
AA3 3 PRO A 87 ? VAL A 94 ? PRO A 197 VAL A 204
AA3 4 MET A 20 ? VAL A 28 ? MET A 130 VAL A 138
AA3 5 ILE A 130 ? MET A 139 ? ILE A 240 MET A 249
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N LEU A 10 ? N LEU A 120 O LEU A 124 ? O LEU A 234
AA1 2 3 O LYS A 123 ? O LYS A 233 N GLN A 40 ? N GLN A 150
AA1 3 4 N PHE A 39 ? N PHE A 149 O PHE A 47 ? O PHE A 157
AA1 4 5 N ARG A 52 ? N ARG A 162 O VAL A 60 ? O VAL A 170
AA1 5 6 N LEU A 67 ? N LEU A 177 O ASN A 70 ? O ASN A 180
AA2 1 2 N LEU A 10 ? N LEU A 120 O LEU A 124 ? O LEU A 234
AA2 2 3 O LYS A 123 ? O LYS A 233 N GLN A 40 ? N GLN A 150
AA2 3 4 N PHE A 39 ? N PHE A 149 O PHE A 47 ? O PHE A 157
AA2 4 5 N ARG A 52 ? N ARG A 162 O VAL A 60 ? O VAL A 170
AA2 5 6 N CYS A 63 ? N CYS A 173 O GLU A 75 ? O GLU A 185
AA3 1 2 O LEU A 109 ? O LEU A 219 N VAL A 101 ? N VAL A 211
AA3 2 3 O LYS A 100 ? O LYS A 210 N LEU A 93 ? N LEU A 203
AA3 3 4 O PHE A 88 ? O PHE A 198 N GLY A 26 ? N GLY A 136
AA3 4 5 N LEU A 21 ? N LEU A 131 O THR A 138 ? O THR A 248
#
_pdbx_entry_details.entry_id 8YMD
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_protein_modification N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ARG A 129 ? ? 80.38 5.61
2 1 ASN A 164 ? ? -154.17 78.07
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? A HOH 544 ? 5.82 .
2 1 O ? A HOH 545 ? 5.86 .
3 1 O ? A HOH 546 ? 6.30 .
4 1 O ? A HOH 547 ? 6.32 .
5 1 O ? A HOH 548 ? 6.43 .
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A ALA 111 ? A ALA 1
2 1 Y 1 A GLY 112 ? A GLY 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
FRU C1 C N N 88
FRU C2 C N R 89
FRU C3 C N S 90
FRU C4 C N S 91
FRU C5 C N R 92
FRU C6 C N N 93
FRU O1 O N N 94
FRU O2 O N N 95
FRU O3 O N N 96
FRU O4 O N N 97
FRU O5 O N N 98
FRU O6 O N N 99
FRU H11 H N N 100
FRU H12 H N N 101
FRU H3 H N N 102
FRU H4 H N N 103
FRU H5 H N N 104
FRU H61 H N N 105
FRU H62 H N N 106
FRU HO1 H N N 107
FRU HO2 H N N 108
FRU HO3 H N N 109
FRU HO4 H N N 110
FRU HO6 H N N 111
GLA C1 C N S 112
GLA C2 C N R 113
GLA C3 C N S 114
GLA C4 C N R 115
GLA C5 C N R 116
GLA C6 C N N 117
GLA O1 O N N 118
GLA O2 O N N 119
GLA O3 O N N 120
GLA O4 O N N 121
GLA O5 O N N 122
GLA O6 O N N 123
GLA H1 H N N 124
GLA H2 H N N 125
GLA H3 H N N 126
GLA H4 H N N 127
GLA H5 H N N 128
GLA H61 H N N 129
GLA H62 H N N 130
GLA HO1 H N N 131
GLA HO2 H N N 132
GLA HO3 H N N 133
GLA HO4 H N N 134
GLA HO6 H N N 135
GLC C1 C N S 136
GLC C2 C N R 137
GLC C3 C N S 138
GLC C4 C N S 139
GLC C5 C N R 140
GLC C6 C N N 141
GLC O1 O N N 142
GLC O2 O N N 143
GLC O3 O N N 144
GLC O4 O N N 145
GLC O5 O N N 146
GLC O6 O N N 147
GLC H1 H N N 148
GLC H2 H N N 149
GLC H3 H N N 150
GLC H4 H N N 151
GLC H5 H N N 152
GLC H61 H N N 153
GLC H62 H N N 154
GLC HO1 H N N 155
GLC HO2 H N N 156
GLC HO3 H N N 157
GLC HO4 H N N 158
GLC HO6 H N N 159
GLN N N N N 160
GLN CA C N S 161
GLN C C N N 162
GLN O O N N 163
GLN CB C N N 164
GLN CG C N N 165
GLN CD C N N 166
GLN OE1 O N N 167
GLN NE2 N N N 168
GLN OXT O N N 169
GLN H H N N 170
GLN H2 H N N 171
GLN HA H N N 172
GLN HB2 H N N 173
GLN HB3 H N N 174
GLN HG2 H N N 175
GLN HG3 H N N 176
GLN HE21 H N N 177
GLN HE22 H N N 178
GLN HXT H N N 179
GLU N N N N 180
GLU CA C N S 181
GLU C C N N 182
GLU O O N N 183
GLU CB C N N 184
GLU CG C N N 185
GLU CD C N N 186
GLU OE1 O N N 187
GLU OE2 O N N 188
GLU OXT O N N 189
GLU H H N N 190
GLU H2 H N N 191
GLU HA H N N 192
GLU HB2 H N N 193
GLU HB3 H N N 194
GLU HG2 H N N 195
GLU HG3 H N N 196
GLU HE2 H N N 197
GLU HXT H N N 198
GLY N N N N 199
GLY CA C N N 200
GLY C C N N 201
GLY O O N N 202
GLY OXT O N N 203
GLY H H N N 204
GLY H2 H N N 205
GLY HA2 H N N 206
GLY HA3 H N N 207
GLY HXT H N N 208
HIS N N N N 209
HIS CA C N S 210
HIS C C N N 211
HIS O O N N 212
HIS CB C N N 213
HIS CG C Y N 214
HIS ND1 N Y N 215
HIS CD2 C Y N 216
HIS CE1 C Y N 217
HIS NE2 N Y N 218
HIS OXT O N N 219
HIS H H N N 220
HIS H2 H N N 221
HIS HA H N N 222
HIS HB2 H N N 223
HIS HB3 H N N 224
HIS HD1 H N N 225
HIS HD2 H N N 226
HIS HE1 H N N 227
HIS HE2 H N N 228
HIS HXT H N N 229
HOH O O N N 230
HOH H1 H N N 231
HOH H2 H N N 232
ILE N N N N 233
ILE CA C N S 234
ILE C C N N 235
ILE O O N N 236
ILE CB C N S 237
ILE CG1 C N N 238
ILE CG2 C N N 239
ILE CD1 C N N 240
ILE OXT O N N 241
ILE H H N N 242
ILE H2 H N N 243
ILE HA H N N 244
ILE HB H N N 245
ILE HG12 H N N 246
ILE HG13 H N N 247
ILE HG21 H N N 248
ILE HG22 H N N 249
ILE HG23 H N N 250
ILE HD11 H N N 251
ILE HD12 H N N 252
ILE HD13 H N N 253
ILE HXT H N N 254
LEU N N N N 255
LEU CA C N S 256
LEU C C N N 257
LEU O O N N 258
LEU CB C N N 259
LEU CG C N N 260
LEU CD1 C N N 261
LEU CD2 C N N 262
LEU OXT O N N 263
LEU H H N N 264
LEU H2 H N N 265
LEU HA H N N 266
LEU HB2 H N N 267
LEU HB3 H N N 268
LEU HG H N N 269
LEU HD11 H N N 270
LEU HD12 H N N 271
LEU HD13 H N N 272
LEU HD21 H N N 273
LEU HD22 H N N 274
LEU HD23 H N N 275
LEU HXT H N N 276
LYS N N N N 277
LYS CA C N S 278
LYS C C N N 279
LYS O O N N 280
LYS CB C N N 281
LYS CG C N N 282
LYS CD C N N 283
LYS CE C N N 284
LYS NZ N N N 285
LYS OXT O N N 286
LYS H H N N 287
LYS H2 H N N 288
LYS HA H N N 289
LYS HB2 H N N 290
LYS HB3 H N N 291
LYS HG2 H N N 292
LYS HG3 H N N 293
LYS HD2 H N N 294
LYS HD3 H N N 295
LYS HE2 H N N 296
LYS HE3 H N N 297
LYS HZ1 H N N 298
LYS HZ2 H N N 299
LYS HZ3 H N N 300
LYS HXT H N N 301
MET N N N N 302
MET CA C N S 303
MET C C N N 304
MET O O N N 305
MET CB C N N 306
MET CG C N N 307
MET SD S N N 308
MET CE C N N 309
MET OXT O N N 310
MET H H N N 311
MET H2 H N N 312
MET HA H N N 313
MET HB2 H N N 314
MET HB3 H N N 315
MET HG2 H N N 316
MET HG3 H N N 317
MET HE1 H N N 318
MET HE2 H N N 319
MET HE3 H N N 320
MET HXT H N N 321
PHE N N N N 322
PHE CA C N S 323
PHE C C N N 324
PHE O O N N 325
PHE CB C N N 326
PHE CG C Y N 327
PHE CD1 C Y N 328
PHE CD2 C Y N 329
PHE CE1 C Y N 330
PHE CE2 C Y N 331
PHE CZ C Y N 332
PHE OXT O N N 333
PHE H H N N 334
PHE H2 H N N 335
PHE HA H N N 336
PHE HB2 H N N 337
PHE HB3 H N N 338
PHE HD1 H N N 339
PHE HD2 H N N 340
PHE HE1 H N N 341
PHE HE2 H N N 342
PHE HZ H N N 343
PHE HXT H N N 344
PRO N N N N 345
PRO CA C N S 346
PRO C C N N 347
PRO O O N N 348
PRO CB C N N 349
PRO CG C N N 350
PRO CD C N N 351
PRO OXT O N N 352
PRO H H N N 353
PRO HA H N N 354
PRO HB2 H N N 355
PRO HB3 H N N 356
PRO HG2 H N N 357
PRO HG3 H N N 358
PRO HD2 H N N 359
PRO HD3 H N N 360
PRO HXT H N N 361
SER N N N N 362
SER CA C N S 363
SER C C N N 364
SER O O N N 365
SER CB C N N 366
SER OG O N N 367
SER OXT O N N 368
SER H H N N 369
SER H2 H N N 370
SER HA H N N 371
SER HB2 H N N 372
SER HB3 H N N 373
SER HG H N N 374
SER HXT H N N 375
THR N N N N 376
THR CA C N S 377
THR C C N N 378
THR O O N N 379
THR CB C N R 380
THR OG1 O N N 381
THR CG2 C N N 382
THR OXT O N N 383
THR H H N N 384
THR H2 H N N 385
THR HA H N N 386
THR HB H N N 387
THR HG1 H N N 388
THR HG21 H N N 389
THR HG22 H N N 390
THR HG23 H N N 391
THR HXT H N N 392
TRP N N N N 393
TRP CA C N S 394
TRP C C N N 395
TRP O O N N 396
TRP CB C N N 397
TRP CG C Y N 398
TRP CD1 C Y N 399
TRP CD2 C Y N 400
TRP NE1 N Y N 401
TRP CE2 C Y N 402
TRP CE3 C Y N 403
TRP CZ2 C Y N 404
TRP CZ3 C Y N 405
TRP CH2 C Y N 406
TRP OXT O N N 407
TRP H H N N 408
TRP H2 H N N 409
TRP HA H N N 410
TRP HB2 H N N 411
TRP HB3 H N N 412
TRP HD1 H N N 413
TRP HE1 H N N 414
TRP HE3 H N N 415
TRP HZ2 H N N 416
TRP HZ3 H N N 417
TRP HH2 H N N 418
TRP HXT H N N 419
TYR N N N N 420
TYR CA C N S 421
TYR C C N N 422
TYR O O N N 423
TYR CB C N N 424
TYR CG C Y N 425
TYR CD1 C Y N 426
TYR CD2 C Y N 427
TYR CE1 C Y N 428
TYR CE2 C Y N 429
TYR CZ C Y N 430
TYR OH O N N 431
TYR OXT O N N 432
TYR H H N N 433
TYR H2 H N N 434
TYR HA H N N 435
TYR HB2 H N N 436
TYR HB3 H N N 437
TYR HD1 H N N 438
TYR HD2 H N N 439
TYR HE1 H N N 440
TYR HE2 H N N 441
TYR HH H N N 442
TYR HXT H N N 443
VAL N N N N 444
VAL CA C N S 445
VAL C C N N 446
VAL O O N N 447
VAL CB C N N 448
VAL CG1 C N N 449
VAL CG2 C N N 450
VAL OXT O N N 451
VAL H H N N 452
VAL H2 H N N 453
VAL HA H N N 454
VAL HB H N N 455
VAL HG11 H N N 456
VAL HG12 H N N 457
VAL HG13 H N N 458
VAL HG21 H N N 459
VAL HG22 H N N 460
VAL HG23 H N N 461
VAL HXT H N N 462
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
FRU C1 C2 sing N N 83
FRU C1 O1 sing N N 84
FRU C1 H11 sing N N 85
FRU C1 H12 sing N N 86
FRU C2 C3 sing N N 87
FRU C2 O2 sing N N 88
FRU C2 O5 sing N N 89
FRU C3 C4 sing N N 90
FRU C3 O3 sing N N 91
FRU C3 H3 sing N N 92
FRU C4 C5 sing N N 93
FRU C4 O4 sing N N 94
FRU C4 H4 sing N N 95
FRU C5 C6 sing N N 96
FRU C5 O5 sing N N 97
FRU C5 H5 sing N N 98
FRU C6 O6 sing N N 99
FRU C6 H61 sing N N 100
FRU C6 H62 sing N N 101
FRU O1 HO1 sing N N 102
FRU O2 HO2 sing N N 103
FRU O3 HO3 sing N N 104
FRU O4 HO4 sing N N 105
FRU O6 HO6 sing N N 106
GLA C1 C2 sing N N 107
GLA C1 O1 sing N N 108
GLA C1 O5 sing N N 109
GLA C1 H1 sing N N 110
GLA C2 C3 sing N N 111
GLA C2 O2 sing N N 112
GLA C2 H2 sing N N 113
GLA C3 C4 sing N N 114
GLA C3 O3 sing N N 115
GLA C3 H3 sing N N 116
GLA C4 C5 sing N N 117
GLA C4 O4 sing N N 118
GLA C4 H4 sing N N 119
GLA C5 C6 sing N N 120
GLA C5 O5 sing N N 121
GLA C5 H5 sing N N 122
GLA C6 O6 sing N N 123
GLA C6 H61 sing N N 124
GLA C6 H62 sing N N 125
GLA O1 HO1 sing N N 126
GLA O2 HO2 sing N N 127
GLA O3 HO3 sing N N 128
GLA O4 HO4 sing N N 129
GLA O6 HO6 sing N N 130
GLC C1 C2 sing N N 131
GLC C1 O1 sing N N 132
GLC C1 O5 sing N N 133
GLC C1 H1 sing N N 134
GLC C2 C3 sing N N 135
GLC C2 O2 sing N N 136
GLC C2 H2 sing N N 137
GLC C3 C4 sing N N 138
GLC C3 O3 sing N N 139
GLC C3 H3 sing N N 140
GLC C4 C5 sing N N 141
GLC C4 O4 sing N N 142
GLC C4 H4 sing N N 143
GLC C5 C6 sing N N 144
GLC C5 O5 sing N N 145
GLC C5 H5 sing N N 146
GLC C6 O6 sing N N 147
GLC C6 H61 sing N N 148
GLC C6 H62 sing N N 149
GLC O1 HO1 sing N N 150
GLC O2 HO2 sing N N 151
GLC O3 HO3 sing N N 152
GLC O4 HO4 sing N N 153
GLC O6 HO6 sing N N 154
GLN N CA sing N N 155
GLN N H sing N N 156
GLN N H2 sing N N 157
GLN CA C sing N N 158
GLN CA CB sing N N 159
GLN CA HA sing N N 160
GLN C O doub N N 161
GLN C OXT sing N N 162
GLN CB CG sing N N 163
GLN CB HB2 sing N N 164
GLN CB HB3 sing N N 165
GLN CG CD sing N N 166
GLN CG HG2 sing N N 167
GLN CG HG3 sing N N 168
GLN CD OE1 doub N N 169
GLN CD NE2 sing N N 170
GLN NE2 HE21 sing N N 171
GLN NE2 HE22 sing N N 172
GLN OXT HXT sing N N 173
GLU N CA sing N N 174
GLU N H sing N N 175
GLU N H2 sing N N 176
GLU CA C sing N N 177
GLU CA CB sing N N 178
GLU CA HA sing N N 179
GLU C O doub N N 180
GLU C OXT sing N N 181
GLU CB CG sing N N 182
GLU CB HB2 sing N N 183
GLU CB HB3 sing N N 184
GLU CG CD sing N N 185
GLU CG HG2 sing N N 186
GLU CG HG3 sing N N 187
GLU CD OE1 doub N N 188
GLU CD OE2 sing N N 189
GLU OE2 HE2 sing N N 190
GLU OXT HXT sing N N 191
GLY N CA sing N N 192
GLY N H sing N N 193
GLY N H2 sing N N 194
GLY CA C sing N N 195
GLY CA HA2 sing N N 196
GLY CA HA3 sing N N 197
GLY C O doub N N 198
GLY C OXT sing N N 199
GLY OXT HXT sing N N 200
HIS N CA sing N N 201
HIS N H sing N N 202
HIS N H2 sing N N 203
HIS CA C sing N N 204
HIS CA CB sing N N 205
HIS CA HA sing N N 206
HIS C O doub N N 207
HIS C OXT sing N N 208
HIS CB CG sing N N 209
HIS CB HB2 sing N N 210
HIS CB HB3 sing N N 211
HIS CG ND1 sing Y N 212
HIS CG CD2 doub Y N 213
HIS ND1 CE1 doub Y N 214
HIS ND1 HD1 sing N N 215
HIS CD2 NE2 sing Y N 216
HIS CD2 HD2 sing N N 217
HIS CE1 NE2 sing Y N 218
HIS CE1 HE1 sing N N 219
HIS NE2 HE2 sing N N 220
HIS OXT HXT sing N N 221
HOH O H1 sing N N 222
HOH O H2 sing N N 223
ILE N CA sing N N 224
ILE N H sing N N 225
ILE N H2 sing N N 226
ILE CA C sing N N 227
ILE CA CB sing N N 228
ILE CA HA sing N N 229
ILE C O doub N N 230
ILE C OXT sing N N 231
ILE CB CG1 sing N N 232
ILE CB CG2 sing N N 233
ILE CB HB sing N N 234
ILE CG1 CD1 sing N N 235
ILE CG1 HG12 sing N N 236
ILE CG1 HG13 sing N N 237
ILE CG2 HG21 sing N N 238
ILE CG2 HG22 sing N N 239
ILE CG2 HG23 sing N N 240
ILE CD1 HD11 sing N N 241
ILE CD1 HD12 sing N N 242
ILE CD1 HD13 sing N N 243
ILE OXT HXT sing N N 244
LEU N CA sing N N 245
LEU N H sing N N 246
LEU N H2 sing N N 247
LEU CA C sing N N 248
LEU CA CB sing N N 249
LEU CA HA sing N N 250
LEU C O doub N N 251
LEU C OXT sing N N 252
LEU CB CG sing N N 253
LEU CB HB2 sing N N 254
LEU CB HB3 sing N N 255
LEU CG CD1 sing N N 256
LEU CG CD2 sing N N 257
LEU CG HG sing N N 258
LEU CD1 HD11 sing N N 259
LEU CD1 HD12 sing N N 260
LEU CD1 HD13 sing N N 261
LEU CD2 HD21 sing N N 262
LEU CD2 HD22 sing N N 263
LEU CD2 HD23 sing N N 264
LEU OXT HXT sing N N 265
LYS N CA sing N N 266
LYS N H sing N N 267
LYS N H2 sing N N 268
LYS CA C sing N N 269
LYS CA CB sing N N 270
LYS CA HA sing N N 271
LYS C O doub N N 272
LYS C OXT sing N N 273
LYS CB CG sing N N 274
LYS CB HB2 sing N N 275
LYS CB HB3 sing N N 276
LYS CG CD sing N N 277
LYS CG HG2 sing N N 278
LYS CG HG3 sing N N 279
LYS CD CE sing N N 280
LYS CD HD2 sing N N 281
LYS CD HD3 sing N N 282
LYS CE NZ sing N N 283
LYS CE HE2 sing N N 284
LYS CE HE3 sing N N 285
LYS NZ HZ1 sing N N 286
LYS NZ HZ2 sing N N 287
LYS NZ HZ3 sing N N 288
LYS OXT HXT sing N N 289
MET N CA sing N N 290
MET N H sing N N 291
MET N H2 sing N N 292
MET CA C sing N N 293
MET CA CB sing N N 294
MET CA HA sing N N 295
MET C O doub N N 296
MET C OXT sing N N 297
MET CB CG sing N N 298
MET CB HB2 sing N N 299
MET CB HB3 sing N N 300
MET CG SD sing N N 301
MET CG HG2 sing N N 302
MET CG HG3 sing N N 303
MET SD CE sing N N 304
MET CE HE1 sing N N 305
MET CE HE2 sing N N 306
MET CE HE3 sing N N 307
MET OXT HXT sing N N 308
PHE N CA sing N N 309
PHE N H sing N N 310
PHE N H2 sing N N 311
PHE CA C sing N N 312
PHE CA CB sing N N 313
PHE CA HA sing N N 314
PHE C O doub N N 315
PHE C OXT sing N N 316
PHE CB CG sing N N 317
PHE CB HB2 sing N N 318
PHE CB HB3 sing N N 319
PHE CG CD1 doub Y N 320
PHE CG CD2 sing Y N 321
PHE CD1 CE1 sing Y N 322
PHE CD1 HD1 sing N N 323
PHE CD2 CE2 doub Y N 324
PHE CD2 HD2 sing N N 325
PHE CE1 CZ doub Y N 326
PHE CE1 HE1 sing N N 327
PHE CE2 CZ sing Y N 328
PHE CE2 HE2 sing N N 329
PHE CZ HZ sing N N 330
PHE OXT HXT sing N N 331
PRO N CA sing N N 332
PRO N CD sing N N 333
PRO N H sing N N 334
PRO CA C sing N N 335
PRO CA CB sing N N 336
PRO CA HA sing N N 337
PRO C O doub N N 338
PRO C OXT sing N N 339
PRO CB CG sing N N 340
PRO CB HB2 sing N N 341
PRO CB HB3 sing N N 342
PRO CG CD sing N N 343
PRO CG HG2 sing N N 344
PRO CG HG3 sing N N 345
PRO CD HD2 sing N N 346
PRO CD HD3 sing N N 347
PRO OXT HXT sing N N 348
SER N CA sing N N 349
SER N H sing N N 350
SER N H2 sing N N 351
SER CA C sing N N 352
SER CA CB sing N N 353
SER CA HA sing N N 354
SER C O doub N N 355
SER C OXT sing N N 356
SER CB OG sing N N 357
SER CB HB2 sing N N 358
SER CB HB3 sing N N 359
SER OG HG sing N N 360
SER OXT HXT sing N N 361
THR N CA sing N N 362
THR N H sing N N 363
THR N H2 sing N N 364
THR CA C sing N N 365
THR CA CB sing N N 366
THR CA HA sing N N 367
THR C O doub N N 368
THR C OXT sing N N 369
THR CB OG1 sing N N 370
THR CB CG2 sing N N 371
THR CB HB sing N N 372
THR OG1 HG1 sing N N 373
THR CG2 HG21 sing N N 374
THR CG2 HG22 sing N N 375
THR CG2 HG23 sing N N 376
THR OXT HXT sing N N 377
TRP N CA sing N N 378
TRP N H sing N N 379
TRP N H2 sing N N 380
TRP CA C sing N N 381
TRP CA CB sing N N 382
TRP CA HA sing N N 383
TRP C O doub N N 384
TRP C OXT sing N N 385
TRP CB CG sing N N 386
TRP CB HB2 sing N N 387
TRP CB HB3 sing N N 388
TRP CG CD1 doub Y N 389
TRP CG CD2 sing Y N 390
TRP CD1 NE1 sing Y N 391
TRP CD1 HD1 sing N N 392
TRP CD2 CE2 doub Y N 393
TRP CD2 CE3 sing Y N 394
TRP NE1 CE2 sing Y N 395
TRP NE1 HE1 sing N N 396
TRP CE2 CZ2 sing Y N 397
TRP CE3 CZ3 doub Y N 398
TRP CE3 HE3 sing N N 399
TRP CZ2 CH2 doub Y N 400
TRP CZ2 HZ2 sing N N 401
TRP CZ3 CH2 sing Y N 402
TRP CZ3 HZ3 sing N N 403
TRP CH2 HH2 sing N N 404
TRP OXT HXT sing N N 405
TYR N CA sing N N 406
TYR N H sing N N 407
TYR N H2 sing N N 408
TYR CA C sing N N 409
TYR CA CB sing N N 410
TYR CA HA sing N N 411
TYR C O doub N N 412
TYR C OXT sing N N 413
TYR CB CG sing N N 414
TYR CB HB2 sing N N 415
TYR CB HB3 sing N N 416
TYR CG CD1 doub Y N 417
TYR CG CD2 sing Y N 418
TYR CD1 CE1 sing Y N 419
TYR CD1 HD1 sing N N 420
TYR CD2 CE2 doub Y N 421
TYR CD2 HD2 sing N N 422
TYR CE1 CZ doub Y N 423
TYR CE1 HE1 sing N N 424
TYR CE2 CZ sing Y N 425
TYR CE2 HE2 sing N N 426
TYR CZ OH sing N N 427
TYR OH HH sing N N 428
TYR OXT HXT sing N N 429
VAL N CA sing N N 430
VAL N H sing N N 431
VAL N H2 sing N N 432
VAL CA C sing N N 433
VAL CA CB sing N N 434
VAL CA HA sing N N 435
VAL C O doub N N 436
VAL C OXT sing N N 437
VAL CB CG1 sing N N 438
VAL CB CG2 sing N N 439
VAL CB HB sing N N 440
VAL CG1 HG11 sing N N 441
VAL CG1 HG12 sing N N 442
VAL CG1 HG13 sing N N 443
VAL CG2 HG21 sing N N 444
VAL CG2 HG22 sing N N 445
VAL CG2 HG23 sing N N 446
VAL OXT HXT sing N N 447
#
_pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)'
_pdbx_audit_support.country China
_pdbx_audit_support.grant_number 32171255
_pdbx_audit_support.ordinal 1
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 FRU 1 n
2 GLC 2 n
2 GLA 3 n
2 GLA 4 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 4R9A
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 8YMD
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.Cartn_transform_axes ?
_atom_sites.fract_transf_matrix[1][1] 0.027866
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017427
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.016203
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
H
N
O
S
#
loop_