HEADER VIRAL PROTEIN 09-MAR-24 8YMK TITLE LOCALIZED RECONSTRUCTION OF HEPATITIS B VIRUS SURFACE ANTIGEN DIMER IN TITLE 2 THE SUBVIRAL PARTICLE WITH D2 SYMMETRY FROM DATASET A0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM S OF LARGE ENVELOPE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L GLYCOPROTEIN,L-HBSAG,LHB,LARGE S PROTEIN,LARGE SURFACE COMPND 5 PROTEIN,MAJOR SURFACE ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS AYW/CHINA/TIBET127/2002; SOURCE 3 ORGANISM_TAXID: 489469; SOURCE 4 STRAIN: ISOLATE CHINA/TIBET127/2002; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS SURFACE ANTIGEN, LOCALIZED RECONSTRUCTION, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR T.WANG,L.CAO,A.MU,Q.WANG,Z.H.RAO REVDAT 3 09-OCT-24 8YMK 1 REMARK REVDAT 2 25-SEP-24 8YMK 1 JRNL REVDAT 1 18-SEP-24 8YMK 0 JRNL AUTH Q.WANG,T.WANG,L.CAO,A.MU,S.FU,P.WANG,Y.GAO,W.JI,Z.LIU,Z.DU, JRNL AUTH 2 L.W.GUDDAT,W.ZHANG,S.LI,X.LI,Z.LOU,X.WANG,Z.HU,Z.RAO JRNL TITL INHERENT SYMMETRY AND FLEXIBILITY IN HEPATITIS B VIRUS JRNL TITL 2 SUBVIRAL PARTICLES. JRNL REF SCIENCE V. 385 1217 2024 JRNL REFN ESSN 1095-9203 JRNL PMID 39264996 JRNL DOI 10.1126/SCIENCE.ADP1453 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, CTFFIND, UCSF REMARK 3 CHIMERA, RELION, CRYOSPARC, CRYOSPARC, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 8YMJ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 286408 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8YMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300045960. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEPATITIS B VIRUS REMARK 245 AYW/CHINA/TIBET127/2002 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 15720 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 22500 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 THR A 5 OG1 CG2 REMARK 470 SER A 6 OG REMARK 470 PHE A 8 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 9 CG CD1 CD2 REMARK 470 PRO A 11 CG CD REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 VAL A 14 CG1 CG2 REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 PHE A 19 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 20 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 21 CG CD1 CD2 REMARK 470 LEU A 22 CG CD1 CD2 REMARK 470 THR A 23 OG1 CG2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 25 CG1 CG2 CD1 REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 THR A 27 OG1 CG2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 THR A 45 OG1 CG2 REMARK 470 THR A 46 OG1 CG2 REMARK 470 VAL A 47 CG1 CG2 REMARK 470 LEU A 49 CG CD1 CD2 REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 SER A 53 OG REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 SER A 55 OG REMARK 470 PRO A 56 CG CD REMARK 470 ILE A 57 CG1 CG2 CD1 REMARK 470 SER A 58 OG REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 HIS A 60 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 61 OG REMARK 470 PRO A 62 CG CD REMARK 470 THR A 63 OG1 CG2 REMARK 470 SER A 64 OG REMARK 470 PRO A 66 CG CD REMARK 470 PRO A 67 CG CD REMARK 470 THR A 68 OG1 CG2 REMARK 470 CYS A 69 SG REMARK 470 PRO A 70 CG CD REMARK 470 TYR A 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 MET A 75 CG SD CE REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 93 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 MET A 103 CG SD CE REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 PRO A 105 CG CD REMARK 470 VAL A 106 CG1 CG2 REMARK 470 PRO A 108 CG CD REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 ILE A 110 CG1 CG2 CD1 REMARK 470 PRO A 111 CG CD REMARK 470 SER A 113 OG REMARK 470 SER A 114 OG REMARK 470 THR A 115 OG1 CG2 REMARK 470 THR A 116 OG1 CG2 REMARK 470 SER A 117 OG REMARK 470 THR A 118 OG1 CG2 REMARK 470 PRO A 120 CG CD REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 THR A 123 OG1 CG2 REMARK 470 THR A 125 OG1 CG2 REMARK 470 THR A 126 OG1 CG2 REMARK 470 PRO A 127 CG CD REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 THR A 131 OG1 CG2 REMARK 470 SER A 132 OG REMARK 470 MET A 133 CG SD CE REMARK 470 TYR A 134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 135 CG CD REMARK 470 SER A 136 OG REMARK 470 CYS A 138 SG REMARK 470 THR A 140 OG1 CG2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 PRO A 142 CG CD REMARK 470 SER A 143 OG REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 THR A 148 OG1 CG2 REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 PRO A 151 CG CD REMARK 470 ILE A 152 CG1 CG2 CD1 REMARK 470 PRO A 153 CG CD REMARK 470 SER A 154 OG REMARK 470 SER A 155 OG REMARK 470 PHE A 158 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 PHE A 161 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 162 CG CD1 CD2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 SER A 174 OG REMARK 470 LEU A 175 CG CD1 CD2 REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 VAL A 177 CG1 CG2 REMARK 470 PRO A 178 CG CD REMARK 470 PHE A 179 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 180 CG1 CG2 REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 PHE A 183 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 184 CG1 CG2 REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 SER A 187 OG REMARK 470 THR A 189 OG1 CG2 REMARK 470 VAL A 190 CG1 CG2 REMARK 470 TRP A 191 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 191 CZ3 CH2 REMARK 470 LEU A 192 CG CD1 CD2 REMARK 470 SER A 193 OG REMARK 470 VAL A 194 CG1 CG2 REMARK 470 ILE A 195 CG1 CG2 CD1 REMARK 470 TRP A 196 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 196 CZ3 CH2 REMARK 470 MET A 197 CG SD CE REMARK 470 MET A 198 CG SD CE REMARK 470 TYR A 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 203 CG CD REMARK 470 SER A 204 OG REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 SER A 207 OG REMARK 470 ILE A 208 CG1 CG2 CD1 REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 SER A 210 OG REMARK 470 PRO A 211 CG CD REMARK 470 PHE A 212 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 213 CG CD1 CD2 REMARK 470 PRO A 214 CG CD REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 LEU A 216 CG CD1 CD2 REMARK 470 PRO A 217 CG CD REMARK 470 ILE A 218 CG1 CG2 CD1 REMARK 470 PHE A 219 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 220 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 222 CG CD1 CD2 REMARK 470 VAL A 224 CG1 CG2 REMARK 470 ILE A 226 CG1 CG2 CD1 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 ILE B 4 CG1 CG2 CD1 REMARK 470 THR B 5 OG1 CG2 REMARK 470 SER B 6 OG REMARK 470 PHE B 8 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 9 CG CD1 CD2 REMARK 470 PRO B 11 CG CD REMARK 470 LEU B 12 CG CD1 CD2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 VAL B 14 CG1 CG2 REMARK 470 LEU B 15 CG CD1 CD2 REMARK 470 GLN B 16 CG CD OE1 NE2 REMARK 470 PHE B 19 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 20 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 21 CG CD1 CD2 REMARK 470 LEU B 22 CG CD1 CD2 REMARK 470 THR B 23 OG1 CG2 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 PHE B 41 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 42 CG CD1 CD2 REMARK 470 THR B 45 OG1 CG2 REMARK 470 THR B 46 OG1 CG2 REMARK 470 VAL B 47 CG1 CG2 REMARK 470 LEU B 49 CG CD1 CD2 REMARK 470 GLN B 51 CG CD OE1 NE2 REMARK 470 ASN B 52 CG OD1 ND2 REMARK 470 SER B 53 OG REMARK 470 GLN B 54 CG CD OE1 NE2 REMARK 470 SER B 55 OG REMARK 470 PRO B 56 CG CD REMARK 470 ILE B 57 CG1 CG2 CD1 REMARK 470 SER B 58 OG REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 HIS B 60 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 61 OG REMARK 470 PRO B 62 CG CD REMARK 470 THR B 63 OG1 CG2 REMARK 470 SER B 64 OG REMARK 470 PRO B 66 CG CD REMARK 470 PRO B 67 CG CD REMARK 470 THR B 68 OG1 CG2 REMARK 470 CYS B 69 SG REMARK 470 PRO B 70 CG CD REMARK 470 TYR B 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 MET B 75 CG SD CE REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 80 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 99 CG OD1 OD2 REMARK 470 MET B 103 CG SD CE REMARK 470 LEU B 104 CG CD1 CD2 REMARK 470 PRO B 105 CG CD REMARK 470 VAL B 106 CG1 CG2 REMARK 470 PRO B 108 CG CD REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 ILE B 110 CG1 CG2 CD1 REMARK 470 PRO B 111 CG CD REMARK 470 SER B 113 OG REMARK 470 SER B 114 OG REMARK 470 THR B 115 OG1 CG2 REMARK 470 THR B 116 OG1 CG2 REMARK 470 SER B 117 OG REMARK 470 THR B 118 OG1 CG2 REMARK 470 PRO B 120 CG CD REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 THR B 123 OG1 CG2 REMARK 470 THR B 125 OG1 CG2 REMARK 470 THR B 126 OG1 CG2 REMARK 470 PRO B 127 CG CD REMARK 470 GLN B 129 CG CD OE1 NE2 REMARK 470 THR B 131 OG1 CG2 REMARK 470 SER B 132 OG REMARK 470 MET B 133 CG SD CE REMARK 470 TYR B 134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 135 CG CD REMARK 470 SER B 136 OG REMARK 470 CYS B 138 SG REMARK 470 THR B 140 OG1 CG2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 PRO B 142 CG CD REMARK 470 SER B 143 OG REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 ASN B 146 CG OD1 ND2 REMARK 470 THR B 148 OG1 CG2 REMARK 470 ILE B 150 CG1 CG2 CD1 REMARK 470 PRO B 151 CG CD REMARK 470 ILE B 152 CG1 CG2 CD1 REMARK 470 PRO B 153 CG CD REMARK 470 SER B 154 OG REMARK 470 SER B 155 OG REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 PHE B 161 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 162 CG CD1 CD2 REMARK 470 ARG B 169 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 173 CG CD1 CD2 REMARK 470 VAL B 177 CG1 CG2 REMARK 470 PHE B 179 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 180 CG1 CG2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 PHE B 183 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 184 CG1 CG2 REMARK 470 LEU B 186 CG CD1 CD2 REMARK 470 SER B 187 OG REMARK 470 THR B 189 OG1 CG2 REMARK 470 VAL B 190 CG1 CG2 REMARK 470 TRP B 191 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 191 CZ3 CH2 REMARK 470 LEU B 192 CG CD1 CD2 REMARK 470 SER B 193 OG REMARK 470 VAL B 194 CG1 CG2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 TRP B 196 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 196 CZ3 CH2 REMARK 470 MET B 197 CG SD CE REMARK 470 MET B 198 CG SD CE REMARK 470 TYR B 200 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 203 CG CD REMARK 470 SER B 204 OG REMARK 470 LEU B 205 CG CD1 CD2 REMARK 470 TYR B 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 207 OG REMARK 470 ILE B 208 CG1 CG2 CD1 REMARK 470 LEU B 209 CG CD1 CD2 REMARK 470 SER B 210 OG REMARK 470 PRO B 211 CG CD REMARK 470 PHE B 212 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 213 CG CD1 CD2 REMARK 470 PRO B 214 CG CD REMARK 470 PHE B 219 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 220 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 222 CG CD1 CD2 REMARK 470 VAL B 224 CG1 CG2 REMARK 470 ILE B 226 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 151 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 PRO B 153 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 36 -15.86 -48.50 REMARK 500 THR A 37 9.90 -64.10 REMARK 500 SER A 61 -139.52 52.09 REMARK 500 THR A 63 167.33 63.59 REMARK 500 CYS A 65 -73.71 -68.75 REMARK 500 PRO A 70 -142.31 50.65 REMARK 500 CYS A 138 33.79 -93.31 REMARK 500 PHE A 170 -153.98 -150.23 REMARK 500 SER A 171 11.54 84.95 REMARK 500 ASN B 59 99.87 -67.93 REMARK 500 SER B 61 -127.05 51.42 REMARK 500 PRO B 62 -0.16 -160.55 REMARK 500 THR B 63 -60.21 -93.38 REMARK 500 CYS B 65 -149.84 47.95 REMARK 500 PRO B 70 -124.93 45.44 REMARK 500 ARG B 73 30.92 -91.94 REMARK 500 VAL B 106 32.74 -145.00 REMARK 500 CYS B 121 -149.95 64.20 REMARK 500 ARG B 122 -7.99 72.63 REMARK 500 CYS B 124 -144.42 47.89 REMARK 500 THR B 131 -131.05 55.75 REMARK 500 CYS B 139 78.21 -166.43 REMARK 500 CYS B 149 -138.78 -97.03 REMARK 500 SER B 155 -159.94 -89.69 REMARK 500 ALA B 157 -159.81 -79.22 REMARK 500 PHE B 158 -9.87 -54.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39395 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HEPATITIS B VIRUS SURFACE ANTIGEN SUBVIRAL REMARK 900 PARTICLE WITH D2 SYMMETRY REMARK 900 RELATED ID: 8YMJ RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF HEPATITIS B VIRUS SURFACE ANTIGEN SUBVIRAL REMARK 900 PARTICLE WITH D2 SYMMETRY REMARK 900 RELATED ID: EMD-39396 RELATED DB: EMDB REMARK 900 LOCALIZED RECONSTRUCTION OF HEPATITIS B VIRUS SURFACE ANTIGEN DIMER REMARK 900 IN THE SUBVIRAL PARTICLE WITH D2 SYMMETRY FROM DATASET A0 DBREF 8YMK A 1 226 UNP Q913A6 HBSAG_HBVC7 1 226 DBREF 8YMK B 1 226 UNP Q913A6 HBSAG_HBVC7 1 226 SEQRES 1 A 226 MET GLU ASN ILE THR SER GLY PHE LEU GLY PRO LEU LEU SEQRES 2 A 226 VAL LEU GLN ALA GLY PHE PHE LEU LEU THR ARG ILE LEU SEQRES 3 A 226 THR ILE PRO GLN SER LEU ASP SER TRP TRP THR SER LEU SEQRES 4 A 226 ASN PHE LEU GLY GLY THR THR VAL CYS LEU GLY GLN ASN SEQRES 5 A 226 SER GLN SER PRO ILE SER ASN HIS SER PRO THR SER CYS SEQRES 6 A 226 PRO PRO THR CYS PRO GLY TYR ARG TRP MET CYS LEU ARG SEQRES 7 A 226 ARG PHE ILE ILE PHE LEU PHE ILE LEU LEU LEU CYS LEU SEQRES 8 A 226 ILE PHE LEU LEU VAL LEU LEU ASP TYR GLN GLY MET LEU SEQRES 9 A 226 PRO VAL CYS PRO LEU ILE PRO GLY SER SER THR THR SER SEQRES 10 A 226 THR GLY PRO CYS ARG THR CYS THR THR PRO ALA GLN GLY SEQRES 11 A 226 THR SER MET TYR PRO SER CYS CYS CYS THR LYS PRO SER SEQRES 12 A 226 ASP GLY ASN CYS THR CYS ILE PRO ILE PRO SER SER TRP SEQRES 13 A 226 ALA PHE GLY LYS PHE LEU TRP GLU TRP ALA SER ALA ARG SEQRES 14 A 226 PHE SER TRP LEU SER LEU LEU VAL PRO PHE VAL GLN TRP SEQRES 15 A 226 PHE VAL GLY LEU SER PRO THR VAL TRP LEU SER VAL ILE SEQRES 16 A 226 TRP MET MET TRP TYR TRP GLY PRO SER LEU TYR SER ILE SEQRES 17 A 226 LEU SER PRO PHE LEU PRO LEU LEU PRO ILE PHE PHE CYS SEQRES 18 A 226 LEU TRP VAL TYR ILE SEQRES 1 B 226 MET GLU ASN ILE THR SER GLY PHE LEU GLY PRO LEU LEU SEQRES 2 B 226 VAL LEU GLN ALA GLY PHE PHE LEU LEU THR ARG ILE LEU SEQRES 3 B 226 THR ILE PRO GLN SER LEU ASP SER TRP TRP THR SER LEU SEQRES 4 B 226 ASN PHE LEU GLY GLY THR THR VAL CYS LEU GLY GLN ASN SEQRES 5 B 226 SER GLN SER PRO ILE SER ASN HIS SER PRO THR SER CYS SEQRES 6 B 226 PRO PRO THR CYS PRO GLY TYR ARG TRP MET CYS LEU ARG SEQRES 7 B 226 ARG PHE ILE ILE PHE LEU PHE ILE LEU LEU LEU CYS LEU SEQRES 8 B 226 ILE PHE LEU LEU VAL LEU LEU ASP TYR GLN GLY MET LEU SEQRES 9 B 226 PRO VAL CYS PRO LEU ILE PRO GLY SER SER THR THR SER SEQRES 10 B 226 THR GLY PRO CYS ARG THR CYS THR THR PRO ALA GLN GLY SEQRES 11 B 226 THR SER MET TYR PRO SER CYS CYS CYS THR LYS PRO SER SEQRES 12 B 226 ASP GLY ASN CYS THR CYS ILE PRO ILE PRO SER SER TRP SEQRES 13 B 226 ALA PHE GLY LYS PHE LEU TRP GLU TRP ALA SER ALA ARG SEQRES 14 B 226 PHE SER TRP LEU SER LEU LEU VAL PRO PHE VAL GLN TRP SEQRES 15 B 226 PHE VAL GLY LEU SER PRO THR VAL TRP LEU SER VAL ILE SEQRES 16 B 226 TRP MET MET TRP TYR TRP GLY PRO SER LEU TYR SER ILE SEQRES 17 B 226 LEU SER PRO PHE LEU PRO LEU LEU PRO ILE PHE PHE CYS SEQRES 18 B 226 LEU TRP VAL TYR ILE HELIX 1 AA1 GLU A 2 ILE A 28 1 27 HELIX 2 AA2 ILE A 28 TRP A 36 1 9 HELIX 3 AA3 THR A 37 GLY A 44 1 8 HELIX 4 AA4 ARG A 73 GLN A 101 1 29 HELIX 5 AA5 PHE A 158 ARG A 169 1 12 HELIX 6 AA6 LEU A 175 VAL A 184 1 10 HELIX 7 AA7 LEU A 186 GLY A 202 1 17 HELIX 8 AA8 PRO A 203 LEU A 213 1 11 HELIX 9 AA9 PRO A 214 ILE A 226 1 13 HELIX 10 AB1 GLU B 2 GLY B 44 1 43 HELIX 11 AB2 TRP B 74 GLY B 102 1 29 HELIX 12 AB3 ALA B 157 PHE B 170 1 14 HELIX 13 AB4 SER B 171 GLY B 185 1 15 HELIX 14 AB5 SER B 187 TRP B 199 1 13 HELIX 15 AB6 TRP B 201 LEU B 213 1 13 HELIX 16 AB7 LEU B 215 ILE B 226 1 12 SSBOND 1 CYS A 48 CYS A 65 1555 1555 2.03 SSBOND 2 CYS A 107 CYS B 107 1555 1555 2.04 SSBOND 3 CYS A 121 CYS A 124 1555 1555 2.03 SSBOND 4 CYS A 137 CYS A 149 1555 1555 2.03 SSBOND 5 CYS A 139 CYS A 147 1555 1555 2.03 SSBOND 6 CYS B 48 CYS B 65 1555 1555 2.03 SSBOND 7 CYS B 121 CYS B 124 1555 1555 2.04 SSBOND 8 CYS B 137 CYS B 149 1555 1555 2.03 SSBOND 9 CYS B 139 CYS B 147 1555 1555 2.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1356 ILE A 226 TER 2746 ILE B 226 CONECT 283 368 CONECT 368 283 CONECT 664 2031 CONECT 733 749 CONECT 749 733 CONECT 814 876 CONECT 825 865 CONECT 865 825 CONECT 876 814 CONECT 1647 1732 CONECT 1732 1647 CONECT 2031 664 CONECT 2100 2116 CONECT 2116 2100 CONECT 2181 2243 CONECT 2192 2232 CONECT 2232 2192 CONECT 2243 2181 MASTER 461 0 0 16 0 0 0 6 2744 2 18 36 END