HEADER STRUCTURAL PROTEIN 12-MAR-24 8YNX TITLE CRYSTAL STRUCTURE OF CAG3-CAGT COMPLEX FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAG PATHOGENICITY ISLAND PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAG PATHOGENICITY ISLAND PROTEIN T; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: CAG3, HPG27_481; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 10 ORGANISM_TAXID: 563041; SOURCE 11 STRAIN: G27; SOURCE 12 GENE: CAGT, HPG27_491; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE IV SECRETION SYSTEM, HELICOBACTER PYLORI, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.MOK,S.W.N.AU REVDAT 2 16-APR-25 8YNX 1 JRNL REVDAT 1 19-MAR-25 8YNX 0 JRNL AUTH C.Y.MOK,H.Y.CHU,W.W.L.LAM,S.W.N.AU JRNL TITL STRUCTURAL INSIGHTS INTO THE ASSEMBLY PATHWAY OF THE JRNL TITL 2 HELICOBACTER PYLORI CAGT4SS OUTER MEMBRANE CORE COMPLEX. JRNL REF STRUCTURE V. 32 1725 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 39032488 JRNL DOI 10.1016/J.STR.2024.06.019 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 13268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1300 - 5.5400 0.98 2657 140 0.1659 0.1892 REMARK 3 2 5.5400 - 4.4100 0.99 2560 135 0.1454 0.1871 REMARK 3 3 4.4000 - 3.8500 0.99 2527 133 0.1714 0.1894 REMARK 3 4 3.8500 - 3.5000 0.99 2489 131 0.1981 0.2564 REMARK 3 5 3.5000 - 3.2500 0.94 2371 125 0.2361 0.2443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.322 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.599 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2080 REMARK 3 ANGLE : 1.156 2812 REMARK 3 CHIRALITY : 0.061 308 REMARK 3 PLANARITY : 0.008 362 REMARK 3 DIHEDRAL : 6.429 271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6385 -11.3965 19.6249 REMARK 3 T TENSOR REMARK 3 T11: 0.5625 T22: 0.5927 REMARK 3 T33: 0.6853 T12: 0.1974 REMARK 3 T13: 0.1446 T23: 0.1866 REMARK 3 L TENSOR REMARK 3 L11: 8.0005 L22: 5.1125 REMARK 3 L33: 9.2879 L12: -3.1298 REMARK 3 L13: -3.0470 L23: 0.7529 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.3453 S13: -0.4588 REMARK 3 S21: -0.1715 S22: -0.5208 S23: -0.7444 REMARK 3 S31: 0.7389 S32: 0.6225 S33: 0.4915 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1649 -1.5856 7.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.9942 T22: 0.7532 REMARK 3 T33: 0.5605 T12: 0.0061 REMARK 3 T13: 0.0980 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 2.7331 L22: 7.7036 REMARK 3 L33: 5.2472 L12: -3.5720 REMARK 3 L13: 0.9750 L23: -4.5193 REMARK 3 S TENSOR REMARK 3 S11: 0.1062 S12: 0.6029 S13: -0.5281 REMARK 3 S21: -1.5231 S22: -0.9183 S23: 0.1057 REMARK 3 S31: 1.4477 S32: 1.4857 S33: 0.6348 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2386 6.7805 13.1814 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.3896 REMARK 3 T33: 0.3725 T12: -0.0106 REMARK 3 T13: -0.0008 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 2.5207 L22: 8.2085 REMARK 3 L33: 7.9270 L12: -1.2424 REMARK 3 L13: -1.2790 L23: -6.8781 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.0068 S13: 0.2900 REMARK 3 S21: 0.2338 S22: 0.2488 S23: 0.5381 REMARK 3 S31: -0.0589 S32: -0.0741 S33: -0.1582 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4324 -8.6783 25.0089 REMARK 3 T TENSOR REMARK 3 T11: 0.5255 T22: 0.3857 REMARK 3 T33: 0.2616 T12: -0.0840 REMARK 3 T13: -0.0195 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 7.3227 L22: 5.0276 REMARK 3 L33: 3.9468 L12: -0.9113 REMARK 3 L13: -1.0984 L23: -4.2463 REMARK 3 S TENSOR REMARK 3 S11: 0.2057 S12: 0.1064 S13: 0.2237 REMARK 3 S21: -0.6158 S22: -0.0879 S23: -0.1215 REMARK 3 S31: -0.1739 S32: -0.3616 S33: -0.1494 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9264 -23.2893 23.7788 REMARK 3 T TENSOR REMARK 3 T11: 0.8470 T22: 0.4569 REMARK 3 T33: 0.8108 T12: 0.1768 REMARK 3 T13: 0.0915 T23: 0.1754 REMARK 3 L TENSOR REMARK 3 L11: 7.5799 L22: 6.6128 REMARK 3 L33: 4.2125 L12: 6.1548 REMARK 3 L13: -0.6122 L23: 2.0262 REMARK 3 S TENSOR REMARK 3 S11: -0.4174 S12: -0.5829 S13: -0.7040 REMARK 3 S21: -0.1017 S22: -0.1543 S23: 0.0394 REMARK 3 S31: 0.3481 S32: -0.1272 S33: 0.4021 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4751 -11.4181 33.4216 REMARK 3 T TENSOR REMARK 3 T11: 0.9108 T22: 0.8927 REMARK 3 T33: 0.8807 T12: -0.0053 REMARK 3 T13: -0.0351 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 2.3510 L22: 2.3233 REMARK 3 L33: 7.4659 L12: -2.2977 REMARK 3 L13: 2.2567 L23: -2.4530 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: -1.7780 S13: -1.1151 REMARK 3 S21: 0.9956 S22: -0.3714 S23: -0.9477 REMARK 3 S31: -0.1830 S32: 0.9708 S33: 0.3442 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1055 -6.9629 6.1653 REMARK 3 T TENSOR REMARK 3 T11: 2.0432 T22: 0.8716 REMARK 3 T33: 1.2065 T12: -0.1602 REMARK 3 T13: -0.4427 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 0.3219 L22: 0.3421 REMARK 3 L33: 4.2928 L12: 0.2530 REMARK 3 L13: 1.1641 L23: 0.9634 REMARK 3 S TENSOR REMARK 3 S11: -0.5661 S12: -0.1572 S13: -0.1457 REMARK 3 S21: -0.6004 S22: -1.0796 S23: 1.3846 REMARK 3 S31: -2.9971 S32: -0.0084 S33: 1.8278 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3918 1.6724 15.3563 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.3098 REMARK 3 T33: 0.4123 T12: -0.0616 REMARK 3 T13: -0.0308 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.2996 L22: 5.7522 REMARK 3 L33: 3.8615 L12: 0.4044 REMARK 3 L13: -1.2222 L23: -4.3989 REMARK 3 S TENSOR REMARK 3 S11: 0.1455 S12: 0.1312 S13: 0.2580 REMARK 3 S21: -0.2869 S22: 0.0521 S23: -0.1518 REMARK 3 S31: 0.1802 S32: -0.3050 S33: -0.1819 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5640 17.6152 6.6794 REMARK 3 T TENSOR REMARK 3 T11: 0.4392 T22: 0.3821 REMARK 3 T33: 0.3774 T12: -0.0114 REMARK 3 T13: 0.0274 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 9.6384 L22: 4.7894 REMARK 3 L33: 8.5264 L12: 3.4032 REMARK 3 L13: 0.5389 L23: -1.6625 REMARK 3 S TENSOR REMARK 3 S11: 0.3413 S12: 0.0238 S13: 0.2286 REMARK 3 S21: -0.2397 S22: 0.0479 S23: -0.3420 REMARK 3 S31: 0.3007 S32: 0.6576 S33: -0.3992 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13523 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS I A10 0.06M DIVALENTS MIX, REMARK 280 0.1M BUFFER SYSTEM 3, 30% V/V PRECIPITANT MIX 2, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.10200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.31050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.31050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.05100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.31050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.31050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.15300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.31050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.31050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.05100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.31050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.31050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.15300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.10200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 ILE A 25 REMARK 465 SER A 26 REMARK 465 GLU A 27 REMARK 465 ALA A 28 REMARK 465 ASP A 29 REMARK 465 LYS A 30 REMARK 465 VAL A 31 REMARK 465 ILE A 32 REMARK 465 LYS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 LYS A 36 REMARK 465 GLU A 37 REMARK 465 THR A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 LYS A 42 REMARK 465 LYS A 43 REMARK 465 GLU A 44 REMARK 465 VAL A 45 REMARK 465 LYS A 46 REMARK 465 ARG A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 LYS A 50 REMARK 465 GLU A 51 REMARK 465 ALA A 52 REMARK 465 LYS A 53 REMARK 465 GLN A 54 REMARK 465 ARG A 55 REMARK 465 GLN A 56 REMARK 465 ARG A 184 REMARK 465 SER A 185 REMARK 465 ASP A 186 REMARK 465 PRO A 187 REMARK 465 ASN A 188 REMARK 465 ALA A 189 REMARK 465 HIS A 190 REMARK 465 THR A 191 REMARK 465 LEU A 192 REMARK 465 ASP A 193 REMARK 465 LYS A 194 REMARK 465 GLY A 195 REMARK 465 ALA A 196 REMARK 465 SER A 197 REMARK 465 ILE A 198 REMARK 465 HIS B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 465 HIS B 50 REMARK 465 HIS B 51 REMARK 465 ASP B 140 REMARK 465 ASN B 141 REMARK 465 PRO B 142 REMARK 465 ASN B 143 REMARK 465 SER B 144 REMARK 465 LYS B 145 REMARK 465 GLU B 146 REMARK 465 LYS B 147 REMARK 465 PRO B 148 REMARK 465 GLN B 149 REMARK 465 THR B 150 REMARK 465 PHE B 151 REMARK 465 ASP B 152 REMARK 465 VAL B 153 REMARK 465 LEU B 154 REMARK 465 GLN B 155 REMARK 465 GLY B 156 REMARK 465 SER B 157 REMARK 465 GLN B 158 REMARK 465 PRO B 159 REMARK 465 MET B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 ALA B 163 REMARK 465 ASN B 164 REMARK 465 THR B 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 123 NE2 GLN B 123 7555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 70 -178.91 -174.01 REMARK 500 ASP A 79 66.51 -115.02 REMARK 500 LYS B 57 30.08 -89.12 REMARK 500 LEU B 126 -88.48 -119.61 REMARK 500 ASN B 127 68.17 -67.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 314 DISTANCE = 7.87 ANGSTROMS DBREF 8YNX A 23 232 UNP B5Z6P5 B5Z6P5_HELPG 23 232 DBREF 8YNX B 54 165 UNP B5Z6Q4 B5Z6Q4_HELPG 54 165 SEQADV 8YNX GLY A 18 UNP B5Z6P5 EXPRESSION TAG SEQADV 8YNX PRO A 19 UNP B5Z6P5 EXPRESSION TAG SEQADV 8YNX LEU A 20 UNP B5Z6P5 EXPRESSION TAG SEQADV 8YNX GLY A 21 UNP B5Z6P5 EXPRESSION TAG SEQADV 8YNX SER A 22 UNP B5Z6P5 EXPRESSION TAG SEQADV 8YNX HIS B 47 UNP B5Z6Q4 EXPRESSION TAG SEQADV 8YNX HIS B 48 UNP B5Z6Q4 EXPRESSION TAG SEQADV 8YNX HIS B 49 UNP B5Z6Q4 EXPRESSION TAG SEQADV 8YNX HIS B 50 UNP B5Z6Q4 EXPRESSION TAG SEQADV 8YNX HIS B 51 UNP B5Z6Q4 EXPRESSION TAG SEQADV 8YNX HIS B 52 UNP B5Z6Q4 EXPRESSION TAG SEQADV 8YNX MET B 53 UNP B5Z6Q4 EXPRESSION TAG SEQRES 1 A 215 GLY PRO LEU GLY SER LYS GLU ILE SER GLU ALA ASP LYS SEQRES 2 A 215 VAL ILE LYS ALA THR LYS GLU THR LYS GLU THR LYS LYS SEQRES 3 A 215 GLU VAL LYS ARG LEU LYS LYS GLU ALA LYS GLN ARG GLN SEQRES 4 A 215 GLN ILE PRO ASP HIS LYS LYS PRO GLN TYR ALA SER VAL SEQRES 5 A 215 ASP ASP THR LYS THR GLN ALA LEU PHE ASP ILE TYR ASP SEQRES 6 A 215 THR LEU ASN VAL ASN ASP LYS SER PHE GLY ASP TRP PHE SEQRES 7 A 215 GLY ASN SER ALA LEU LYS ASP LYS THR TYR LEU TYR ALA SEQRES 8 A 215 MET ASP LEU LEU ASP TYR ASN ASN TYR LEU SER ILE GLU SEQRES 9 A 215 ASN PRO ILE ILE LYS THR ARG ALA MET GLY THR TYR ALA SEQRES 10 A 215 ASP LEU ILE ILE ILE THR GLY SER LEU GLU GLN VAL ASN SEQRES 11 A 215 GLY TYR TYR ASN ILE LEU LYS ALA LEU ASN LYS ARG ASN SEQRES 12 A 215 ALA LYS PHE VAL LEU LYS ILE ASN GLU ASN MET PRO TYR SEQRES 13 A 215 ALA GLN ALA THR PHE LEU ARG VAL PRO LYS ARG SER ASP SEQRES 14 A 215 PRO ASN ALA HIS THR LEU ASP LYS GLY ALA SER ILE ASP SEQRES 15 A 215 GLU ASN LYS LEU PHE GLU GLN GLN LYS ARG ALA TYR PHE SEQRES 16 A 215 ASN TYR ALA ASN ASP VAL ILE CYS ARG PRO ASN ASP GLU SEQRES 17 A 215 VAL CYS SER PRO LEU ARG ASP SEQRES 1 B 119 HIS HIS HIS HIS HIS HIS MET ASP LYS LEU LYS ASP THR SEQRES 2 B 119 PRO PHE MET VAL GLN VAL LYS LEU PRO ASN TYR LYS ASP SEQRES 3 B 119 TYR LEU LEU ASP ASN LYS GLN VAL VAL LEU THR PHE LYS SEQRES 4 B 119 LEU VAL HIS HIS SER LYS LYS ILE THR LEU ILE GLY ASP SEQRES 5 B 119 ALA ASN LYS ILE LEU GLN TYR LYS ASN TYR PHE GLN ALA SEQRES 6 B 119 ASN GLY ALA ARG SER ASP ILE ASP PHE TYR LEU GLN PRO SEQRES 7 B 119 THR LEU ASN GLN LYS GLY VAL VAL MET ILE ALA SER ASN SEQRES 8 B 119 TYR ASN ASP ASN PRO ASN SER LYS GLU LYS PRO GLN THR SEQRES 9 B 119 PHE ASP VAL LEU GLN GLY SER GLN PRO MET LEU GLY ALA SEQRES 10 B 119 ASN THR FORMUL 3 HOH *22(H2 O) HELIX 1 AA1 PRO A 59 LYS A 63 5 5 HELIX 2 AA2 ASP A 113 ALA A 134 1 22 HELIX 3 AA3 SER A 142 ASN A 157 1 16 HELIX 4 AA4 GLU A 200 VAL A 218 1 19 HELIX 5 AA5 ASP A 224 ARG A 231 5 8 HELIX 6 AA6 ASN B 69 SER B 90 1 22 HELIX 7 AA7 ALA B 99 ALA B 111 1 13 HELIX 8 AA8 ASN B 112 ALA B 114 5 3 SHEET 1 AA1 6 GLN A 65 ALA A 67 0 SHEET 2 AA1 6 ALA A 76 ASP A 79 -1 O PHE A 78 N GLN A 65 SHEET 3 AA1 6 PHE B 61 LYS B 66 1 O MET B 62 N ASP A 79 SHEET 4 AA1 6 GLN A 175 ARG A 180 -1 N PHE A 178 O VAL B 63 SHEET 5 AA1 6 LEU A 136 GLY A 141 -1 N THR A 140 O GLN A 175 SHEET 6 AA1 6 LYS A 162 ILE A 167 1 O LYS A 166 N ILE A 139 SHEET 1 AA2 4 TYR A 105 ASP A 110 0 SHEET 2 AA2 4 VAL B 131 ASN B 137 -1 O MET B 133 N MET A 109 SHEET 3 AA2 4 LYS B 92 ASP B 98 -1 N ILE B 96 O VAL B 132 SHEET 4 AA2 4 ASP B 119 THR B 125 1 O TYR B 121 N LEU B 95 SSBOND 1 CYS A 220 CYS A 227 1555 1555 2.06 CRYST1 112.621 112.621 128.204 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008879 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007800 0.00000 CONECT 1220 1276 CONECT 1276 1220 MASTER 502 0 0 8 10 0 0 6 2060 2 2 27 END