HEADER TRANSFERASE 15-MAR-24 8YP4 TITLE STRUCTURE OF MAP2K1 COMPLEXED WITH 5Z7-OXOZEAENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAP KINASE KINASE 1,MAPKK 1,MKK1,ERK ACTIVATOR KINASE 1, COMPND 5 MAPK/ERK KINASE 1,MEK 1; COMPND 6 EC: 2.7.12.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K1, MEK1, PRKMK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YUMURA,T.KINOSHITA REVDAT 1 22-JAN-25 8YP4 0 JRNL AUTH S.YUMURA,D.KITAGAWA,K.MORITSUGU,A.NAKAYAMA,T.SHINADA,M.SAWA, JRNL AUTH 2 T.KINOSHITA JRNL TITL CONSERVED GATEKEEPER METHIONINE REGULATES THE BINDING AND JRNL TITL 2 ACCESS OF KINASE INHIBITORS TO ATP SITES OF MAP2K1, 4, AND JRNL TITL 3 7: CLUES FOR DEVELOPING SELECTIVE INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 112 29914 2024 JRNL REFN ESSN 1464-3405 JRNL PMID 39111728 JRNL DOI 10.1016/J.BMCL.2024.129914 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.4330 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.47000 REMARK 3 B22 (A**2) : -3.69000 REMARK 3 B33 (A**2) : 6.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.331 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.331 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.533 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4932 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4834 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6627 ; 1.426 ; 1.852 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11183 ; 0.548 ; 1.780 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 6.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ; 7.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 921 ;18.884 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 726 ; 0.210 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5626 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1054 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2412 ; 6.903 ; 9.404 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2412 ; 6.902 ; 9.404 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3001 ;10.652 ;16.867 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3002 ;10.650 ;16.870 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2520 ; 6.339 ;10.048 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2520 ; 6.338 ;10.048 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3627 ;10.192 ;18.262 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5575 ;15.467 ;90.040 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5564 ;15.478 ;90.090 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8YP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.194 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMETE PH 5.0, 19.5% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.47350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLU A 120 REMARK 465 LEU A 215 REMARK 465 ILE A 216 REMARK 465 ASP A 217 REMARK 465 SER A 218 REMARK 465 MET A 219 REMARK 465 ALA A 220 REMARK 465 ASN A 221 REMARK 465 SER A 222 REMARK 465 PHE A 223 REMARK 465 GLY A 237 REMARK 465 THR A 238 REMARK 465 HIS A 239 REMARK 465 GLY A 276 REMARK 465 CYS A 277 REMARK 465 GLN A 278 REMARK 465 VAL A 279 REMARK 465 GLU A 280 REMARK 465 GLY A 281 REMARK 465 ASP A 282 REMARK 465 ALA A 283 REMARK 465 ALA A 284 REMARK 465 GLU A 285 REMARK 465 ALA A 286 REMARK 465 PRO A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 PRO A 290 REMARK 465 ARG A 291 REMARK 465 ALA A 292 REMARK 465 PRO A 293 REMARK 465 GLY A 294 REMARK 465 ARG A 295 REMARK 465 PRO A 296 REMARK 465 LEU A 297 REMARK 465 ALA A 298 REMARK 465 SER A 299 REMARK 465 TYR A 300 REMARK 465 GLY A 301 REMARK 465 MET A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 ARG A 305 REMARK 465 PRO A 306 REMARK 465 PRO A 307 REMARK 465 MET A 308 REMARK 465 SER A 385 REMARK 465 THR A 386 REMARK 465 ALA A 387 REMARK 465 ALA A 388 REMARK 465 ALA A 389 REMARK 465 LEU A 390 REMARK 465 GLU A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 MET B 33 REMARK 465 GLN B 34 REMARK 465 LYS B 35 REMARK 465 LYS B 36 REMARK 465 LEU B 37 REMARK 465 GLU B 38 REMARK 465 GLU B 39 REMARK 465 LEU B 40 REMARK 465 GLU B 41 REMARK 465 LEU B 42 REMARK 465 LEU B 215 REMARK 465 ILE B 216 REMARK 465 ASP B 217 REMARK 465 SER B 218 REMARK 465 MET B 219 REMARK 465 ALA B 220 REMARK 465 ASN B 221 REMARK 465 SER B 222 REMARK 465 PHE B 223 REMARK 465 VAL B 224 REMARK 465 GLY B 225 REMARK 465 GLY B 237 REMARK 465 THR B 238 REMARK 465 GLN B 278 REMARK 465 VAL B 279 REMARK 465 GLU B 280 REMARK 465 GLY B 281 REMARK 465 ASP B 282 REMARK 465 ALA B 283 REMARK 465 ALA B 284 REMARK 465 GLU B 285 REMARK 465 ALA B 286 REMARK 465 PRO B 287 REMARK 465 PRO B 288 REMARK 465 ARG B 289 REMARK 465 PRO B 290 REMARK 465 ARG B 291 REMARK 465 ALA B 292 REMARK 465 PRO B 293 REMARK 465 GLY B 294 REMARK 465 ARG B 295 REMARK 465 PRO B 296 REMARK 465 LEU B 297 REMARK 465 ALA B 298 REMARK 465 SER B 299 REMARK 465 TYR B 300 REMARK 465 GLY B 301 REMARK 465 MET B 302 REMARK 465 ASP B 303 REMARK 465 SER B 304 REMARK 465 ARG B 305 REMARK 465 PRO B 306 REMARK 465 PRO B 384 REMARK 465 SER B 385 REMARK 465 THR B 386 REMARK 465 ALA B 387 REMARK 465 ALA B 388 REMARK 465 ALA B 389 REMARK 465 LEU B 390 REMARK 465 GLU B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 105 N - CA - CB ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 37 71.31 46.83 REMARK 500 GLU A 39 -95.29 -140.85 REMARK 500 LEU A 40 -168.06 174.09 REMARK 500 ASP A 43 108.00 -25.75 REMARK 500 GLU A 44 -33.36 -30.00 REMARK 500 ALA A 76 -165.91 -102.69 REMARK 500 ASN A 78 -133.89 36.65 REMARK 500 ILE A 103 139.35 91.49 REMARK 500 LYS A 104 69.89 -156.97 REMARK 500 PRO A 105 73.14 -116.05 REMARK 500 ALA A 106 -48.37 61.97 REMARK 500 SER A 135 131.68 -171.68 REMARK 500 GLU A 182 40.75 -103.73 REMARK 500 LYS A 183 -76.78 -172.38 REMARK 500 HIS A 188 -102.97 70.59 REMARK 500 ARG A 189 -67.88 160.56 REMARK 500 ASP A 208 108.03 -28.46 REMARK 500 THR A 226 -24.75 101.02 REMARK 500 SER A 241 167.91 76.98 REMARK 500 ASP A 267 -82.82 40.40 REMARK 500 ALA A 268 91.89 -51.37 REMARK 500 LYS A 269 -94.33 30.58 REMARK 500 GLU A 270 -54.96 51.57 REMARK 500 VAL B 60 -82.41 -74.28 REMARK 500 LEU B 74 113.25 -176.02 REMARK 500 ALA B 76 20.65 -169.15 REMARK 500 ASN B 78 -119.28 67.74 REMARK 500 PRO B 105 34.78 -76.64 REMARK 500 ALA B 106 -24.93 -149.76 REMARK 500 ASN B 122 88.41 -153.11 REMARK 500 SER B 135 144.40 -176.77 REMARK 500 GLU B 182 -84.96 -57.50 REMARK 500 LYS B 183 102.45 -56.70 REMARK 500 HIS B 184 160.70 52.52 REMARK 500 LYS B 185 33.10 -90.21 REMARK 500 MET B 187 -137.40 51.48 REMARK 500 HIS B 188 166.44 49.23 REMARK 500 ARG B 189 147.86 96.35 REMARK 500 SER B 200 0.89 -69.09 REMARK 500 ASP B 208 -121.26 -94.09 REMARK 500 PHE B 209 140.13 66.37 REMARK 500 VAL B 211 140.45 -38.82 REMARK 500 SER B 212 -140.92 66.94 REMARK 500 ARG B 227 128.14 78.91 REMARK 500 SER B 228 -95.83 121.59 REMARK 500 TYR B 229 15.81 53.15 REMARK 500 TYR B 240 123.03 176.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 363 0.12 SIDE CHAIN REMARK 500 ARG B 49 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 575 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 561 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 562 DISTANCE = 6.71 ANGSTROMS DBREF 8YP4 A 34 386 UNP Q02750 MP2K1_HUMAN 34 386 DBREF 8YP4 B 34 386 UNP Q02750 MP2K1_HUMAN 34 386 SEQADV 8YP4 MET A 33 UNP Q02750 INITIATING METHIONINE SEQADV 8YP4 ALA A 286 UNP Q02750 THR 286 ENGINEERED MUTATION SEQADV 8YP4 ALA A 292 UNP Q02750 THR 292 ENGINEERED MUTATION SEQADV 8YP4 ALA A 298 UNP Q02750 SER 298 ENGINEERED MUTATION SEQADV 8YP4 ALA A 387 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 ALA A 388 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 ALA A 389 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 LEU A 390 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 GLU A 391 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS A 392 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS A 393 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS A 394 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS A 395 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS A 396 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS A 397 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 MET B 33 UNP Q02750 INITIATING METHIONINE SEQADV 8YP4 ALA B 286 UNP Q02750 THR 286 ENGINEERED MUTATION SEQADV 8YP4 ALA B 292 UNP Q02750 THR 292 ENGINEERED MUTATION SEQADV 8YP4 ALA B 298 UNP Q02750 SER 298 ENGINEERED MUTATION SEQADV 8YP4 ALA B 387 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 ALA B 388 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 ALA B 389 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 LEU B 390 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 GLU B 391 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS B 392 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS B 393 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS B 394 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS B 395 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS B 396 UNP Q02750 EXPRESSION TAG SEQADV 8YP4 HIS B 397 UNP Q02750 EXPRESSION TAG SEQRES 1 A 365 MET GLN LYS LYS LEU GLU GLU LEU GLU LEU ASP GLU GLN SEQRES 2 A 365 GLN ARG LYS ARG LEU GLU ALA PHE LEU THR GLN LYS GLN SEQRES 3 A 365 LYS VAL GLY GLU LEU LYS ASP ASP ASP PHE GLU LYS ILE SEQRES 4 A 365 SER GLU LEU GLY ALA GLY ASN GLY GLY VAL VAL PHE LYS SEQRES 5 A 365 VAL SER HIS LYS PRO SER GLY LEU VAL MET ALA ARG LYS SEQRES 6 A 365 LEU ILE HIS LEU GLU ILE LYS PRO ALA ILE ARG ASN GLN SEQRES 7 A 365 ILE ILE ARG GLU LEU GLN VAL LEU HIS GLU CYS ASN SER SEQRES 8 A 365 PRO TYR ILE VAL GLY PHE TYR GLY ALA PHE TYR SER ASP SEQRES 9 A 365 GLY GLU ILE SER ILE CYS MET GLU HIS MET ASP GLY GLY SEQRES 10 A 365 SER LEU ASP GLN VAL LEU LYS LYS ALA GLY ARG ILE PRO SEQRES 11 A 365 GLU GLN ILE LEU GLY LYS VAL SER ILE ALA VAL ILE LYS SEQRES 12 A 365 GLY LEU THR TYR LEU ARG GLU LYS HIS LYS ILE MET HIS SEQRES 13 A 365 ARG ASP VAL LYS PRO SER ASN ILE LEU VAL ASN SER ARG SEQRES 14 A 365 GLY GLU ILE LYS LEU CYS ASP PHE GLY VAL SER GLY GLN SEQRES 15 A 365 LEU ILE ASP SER MET ALA ASN SER PHE VAL GLY THR ARG SEQRES 16 A 365 SER TYR MET SER PRO GLU ARG LEU GLN GLY THR HIS TYR SEQRES 17 A 365 SER VAL GLN SER ASP ILE TRP SER MET GLY LEU SER LEU SEQRES 18 A 365 VAL GLU MET ALA VAL GLY ARG TYR PRO ILE PRO PRO PRO SEQRES 19 A 365 ASP ALA LYS GLU LEU GLU LEU MET PHE GLY CYS GLN VAL SEQRES 20 A 365 GLU GLY ASP ALA ALA GLU ALA PRO PRO ARG PRO ARG ALA SEQRES 21 A 365 PRO GLY ARG PRO LEU ALA SER TYR GLY MET ASP SER ARG SEQRES 22 A 365 PRO PRO MET ALA ILE PHE GLU LEU LEU ASP TYR ILE VAL SEQRES 23 A 365 ASN GLU PRO PRO PRO LYS LEU PRO SER GLY VAL PHE SER SEQRES 24 A 365 LEU GLU PHE GLN ASP PHE VAL ASN LYS CYS LEU ILE LYS SEQRES 25 A 365 ASN PRO ALA GLU ARG ALA ASP LEU LYS GLN LEU MET VAL SEQRES 26 A 365 HIS ALA PHE ILE LYS ARG SER ASP ALA GLU GLU VAL ASP SEQRES 27 A 365 PHE ALA GLY TRP LEU CYS SER THR ILE GLY LEU ASN GLN SEQRES 28 A 365 PRO SER THR ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 29 A 365 HIS SEQRES 1 B 365 MET GLN LYS LYS LEU GLU GLU LEU GLU LEU ASP GLU GLN SEQRES 2 B 365 GLN ARG LYS ARG LEU GLU ALA PHE LEU THR GLN LYS GLN SEQRES 3 B 365 LYS VAL GLY GLU LEU LYS ASP ASP ASP PHE GLU LYS ILE SEQRES 4 B 365 SER GLU LEU GLY ALA GLY ASN GLY GLY VAL VAL PHE LYS SEQRES 5 B 365 VAL SER HIS LYS PRO SER GLY LEU VAL MET ALA ARG LYS SEQRES 6 B 365 LEU ILE HIS LEU GLU ILE LYS PRO ALA ILE ARG ASN GLN SEQRES 7 B 365 ILE ILE ARG GLU LEU GLN VAL LEU HIS GLU CYS ASN SER SEQRES 8 B 365 PRO TYR ILE VAL GLY PHE TYR GLY ALA PHE TYR SER ASP SEQRES 9 B 365 GLY GLU ILE SER ILE CYS MET GLU HIS MET ASP GLY GLY SEQRES 10 B 365 SER LEU ASP GLN VAL LEU LYS LYS ALA GLY ARG ILE PRO SEQRES 11 B 365 GLU GLN ILE LEU GLY LYS VAL SER ILE ALA VAL ILE LYS SEQRES 12 B 365 GLY LEU THR TYR LEU ARG GLU LYS HIS LYS ILE MET HIS SEQRES 13 B 365 ARG ASP VAL LYS PRO SER ASN ILE LEU VAL ASN SER ARG SEQRES 14 B 365 GLY GLU ILE LYS LEU CYS ASP PHE GLY VAL SER GLY GLN SEQRES 15 B 365 LEU ILE ASP SER MET ALA ASN SER PHE VAL GLY THR ARG SEQRES 16 B 365 SER TYR MET SER PRO GLU ARG LEU GLN GLY THR HIS TYR SEQRES 17 B 365 SER VAL GLN SER ASP ILE TRP SER MET GLY LEU SER LEU SEQRES 18 B 365 VAL GLU MET ALA VAL GLY ARG TYR PRO ILE PRO PRO PRO SEQRES 19 B 365 ASP ALA LYS GLU LEU GLU LEU MET PHE GLY CYS GLN VAL SEQRES 20 B 365 GLU GLY ASP ALA ALA GLU ALA PRO PRO ARG PRO ARG ALA SEQRES 21 B 365 PRO GLY ARG PRO LEU ALA SER TYR GLY MET ASP SER ARG SEQRES 22 B 365 PRO PRO MET ALA ILE PHE GLU LEU LEU ASP TYR ILE VAL SEQRES 23 B 365 ASN GLU PRO PRO PRO LYS LEU PRO SER GLY VAL PHE SER SEQRES 24 B 365 LEU GLU PHE GLN ASP PHE VAL ASN LYS CYS LEU ILE LYS SEQRES 25 B 365 ASN PRO ALA GLU ARG ALA ASP LEU LYS GLN LEU MET VAL SEQRES 26 B 365 HIS ALA PHE ILE LYS ARG SER ASP ALA GLU GLU VAL ASP SEQRES 27 B 365 PHE ALA GLY TRP LEU CYS SER THR ILE GLY LEU ASN GLN SEQRES 28 B 365 PRO SER THR ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 29 B 365 HIS HET WNT A 401 26 HET GOL B 401 6 HET WNT B 402 26 HETNAM WNT (4~{S},9~{S},10~{S},12~{E})-16-METHOXY-4-METHYL-9,10, HETNAM 2 WNT 18-TRIS(OXIDANYL)-3-OXABICYCLO[12.4.0]OCTADECA-1(18), HETNAM 3 WNT 12,14,16-TETRAENE-2,8-DIONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 WNT 2(C19 H24 O7) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *137(H2 O) HELIX 1 AA1 ASP A 43 LYS A 59 1 17 HELIX 2 AA2 LYS A 64 ASP A 66 5 3 HELIX 3 AA3 ILE A 107 GLN A 116 1 10 HELIX 4 AA4 VAL A 117 HIS A 119 5 3 HELIX 5 AA5 LEU A 151 GLY A 159 1 9 HELIX 6 AA6 PRO A 162 GLU A 182 1 21 HELIX 7 AA7 LYS A 192 SER A 194 5 3 HELIX 8 AA8 PRO A 232 GLN A 236 5 5 HELIX 9 AA9 SER A 241 GLY A 259 1 19 HELIX 10 AB1 GLU A 270 PHE A 275 1 6 HELIX 11 AB2 ILE A 310 GLU A 320 1 11 HELIX 12 AB3 SER A 331 LEU A 342 1 12 HELIX 13 AB4 ASP A 351 VAL A 357 1 7 HELIX 14 AB5 HIS A 358 GLU A 367 1 10 HELIX 15 AB6 ASP A 370 GLY A 380 1 11 HELIX 16 AB7 GLU B 44 LYS B 59 1 16 HELIX 17 AB8 LYS B 64 ASP B 66 5 3 HELIX 18 AB9 ILE B 107 GLN B 116 1 10 HELIX 19 AC1 VAL B 117 GLU B 120 5 4 HELIX 20 AC2 LEU B 151 GLY B 159 1 9 HELIX 21 AC3 PRO B 162 GLU B 182 1 21 HELIX 22 AC4 LYS B 192 SER B 194 5 3 HELIX 23 AC5 SER B 241 GLY B 259 1 19 HELIX 24 AC6 ASP B 267 GLY B 276 1 10 HELIX 25 AC7 ALA B 309 GLU B 320 1 12 HELIX 26 AC8 SER B 331 LEU B 342 1 12 HELIX 27 AC9 ASP B 351 VAL B 357 1 7 HELIX 28 AD1 HIS B 358 GLU B 367 1 10 HELIX 29 AD2 ASP B 370 GLY B 380 1 11 SHEET 1 AA1 5 PHE A 68 LEU A 74 0 SHEET 2 AA1 5 VAL A 82 HIS A 87 -1 O SER A 86 N GLU A 69 SHEET 3 AA1 5 LEU A 92 HIS A 100 -1 O ARG A 96 N PHE A 83 SHEET 4 AA1 5 GLU A 138 GLU A 144 -1 O MET A 143 N ALA A 95 SHEET 5 AA1 5 PHE A 129 SER A 135 -1 N TYR A 130 O CYS A 142 SHEET 1 AA2 3 GLY A 149 SER A 150 0 SHEET 2 AA2 3 ILE A 196 VAL A 198 -1 O VAL A 198 N GLY A 149 SHEET 3 AA2 3 ILE A 204 LEU A 206 -1 O LYS A 205 N LEU A 197 SHEET 1 AA3 5 PHE B 68 GLU B 73 0 SHEET 2 AA3 5 VAL B 81 HIS B 87 -1 O LYS B 84 N ILE B 71 SHEET 3 AA3 5 LEU B 92 ILE B 99 -1 O ARG B 96 N PHE B 83 SHEET 4 AA3 5 GLU B 138 MET B 143 -1 O ILE B 141 N LYS B 97 SHEET 5 AA3 5 PHE B 129 SER B 135 -1 N GLY B 131 O CYS B 142 SHEET 1 AA4 3 GLY B 149 SER B 150 0 SHEET 2 AA4 3 ILE B 196 VAL B 198 -1 O VAL B 198 N GLY B 149 SHEET 3 AA4 3 ILE B 204 LEU B 206 -1 O LYS B 205 N LEU B 197 LINK SG CYS A 207 C14 WNT A 401 1555 1555 1.81 LINK SG CYS B 207 C14 WNT B 402 1555 1555 1.88 CISPEP 1 ILE A 263 PRO A 264 0 10.51 CISPEP 2 ILE B 263 PRO B 264 0 9.48 CRYST1 47.364 128.947 65.689 90.00 94.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021113 0.000000 0.001794 0.00000 SCALE2 0.000000 0.007755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015278 0.00000 CONECT 1379 4803 CONECT 3724 4835 CONECT 4785 4792 4804 4805 CONECT 4786 4787 4793 4804 CONECT 4787 4786 4802 CONECT 4788 4789 4791 CONECT 4789 4788 4790 4806 CONECT 4790 4789 4797 4807 CONECT 4791 4788 4793 CONECT 4792 4785 4802 CONECT 4793 4786 4791 CONECT 4794 4795 4799 4809 CONECT 4795 4794 4803 CONECT 4796 4797 4803 CONECT 4797 4790 4796 4808 CONECT 4798 4804 4809 4810 CONECT 4799 4794 CONECT 4800 4801 CONECT 4801 4800 4802 CONECT 4802 4787 4792 4801 CONECT 4803 1379 4795 4796 CONECT 4804 4785 4786 4798 CONECT 4805 4785 CONECT 4806 4789 CONECT 4807 4790 CONECT 4808 4797 CONECT 4809 4794 4798 CONECT 4810 4798 CONECT 4811 4812 4813 CONECT 4812 4811 CONECT 4813 4811 4814 4815 CONECT 4814 4813 CONECT 4815 4813 4816 CONECT 4816 4815 CONECT 4817 4824 4836 4837 CONECT 4818 4819 4825 4836 CONECT 4819 4818 4834 CONECT 4820 4821 4823 CONECT 4821 4820 4822 4838 CONECT 4822 4821 4829 4839 CONECT 4823 4820 4825 CONECT 4824 4817 4834 CONECT 4825 4818 4823 CONECT 4826 4827 4831 4841 CONECT 4827 4826 4835 CONECT 4828 4829 4835 CONECT 4829 4822 4828 4840 CONECT 4830 4836 4841 4842 CONECT 4831 4826 CONECT 4832 4833 CONECT 4833 4832 4834 CONECT 4834 4819 4824 4833 CONECT 4835 3724 4827 4828 CONECT 4836 4817 4818 4830 CONECT 4837 4817 CONECT 4838 4821 CONECT 4839 4822 CONECT 4840 4829 CONECT 4841 4826 4830 CONECT 4842 4830 MASTER 481 0 3 29 16 0 0 6 4969 2 60 58 END