data_8YS1 # _entry.id 8YS1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YS1 pdb_00008ys1 10.2210/pdb8ys1/pdb WWPDB D_1300046250 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-09-24 ? 2 'Structure model' 1 1 2025-10-01 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YS1 _pdbx_database_status.recvd_initial_deposition_date 2024-03-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email kohei.takeshita@riken.jp _pdbx_contact_author.name_first Kohei _pdbx_contact_author.name_last Takeshita _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3469-9844 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Baba, T.' 1 ? 'Ueno, G.' 2 ? 'Ohe, C.' 3 ? 'Saji, S.' 4 ? 'Yamamoto, S.' 5 ? 'Yamamoto, M.' 6 ? 'Ouchida, M.' 7 ? 'Kawasaki-Ohmori, I.' 8 ? 'Takeshita, K.' 9 0000-0003-3469-9844 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Biochim Biophys Acta Gen Subj' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1872-8006 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 1869 _citation.language ? _citation.page_first 130860 _citation.page_last 130860 _citation.title 'The F54L mutation of Thioredoxin shows protein instability and increased fluctuations of the catalytic center.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbagen.2025.130860 _citation.pdbx_database_id_PubMed 40953808 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, T.' 1 ? primary 'Ueno, G.' 2 ? primary 'Ohe, C.' 3 ? primary 'Saji, S.' 4 ? primary 'Yamamoto, S.' 5 ? primary 'Yamamoto, M.' 6 ? primary 'Nakagawa, H.' 7 ? primary 'Okazaki, N.' 8 ? primary 'Ouchida, M.' 9 ? primary 'Ohmori, I.K.' 10 ? primary 'Takeshita, K.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Thioredoxin 13817.690 2 ? ? ? ? 2 water nat water 18.015 102 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Trx # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHHHGSENLYFQSVKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQ DVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHHHGSENLYFQSVKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQ DVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 GLY n 1 11 SER n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 TYR n 1 16 PHE n 1 17 GLN n 1 18 SER n 1 19 VAL n 1 20 LYS n 1 21 LEU n 1 22 ILE n 1 23 GLU n 1 24 SER n 1 25 LYS n 1 26 GLU n 1 27 ALA n 1 28 PHE n 1 29 GLN n 1 30 GLU n 1 31 ALA n 1 32 LEU n 1 33 ALA n 1 34 ALA n 1 35 ALA n 1 36 GLY n 1 37 ASP n 1 38 LYS n 1 39 LEU n 1 40 VAL n 1 41 VAL n 1 42 VAL n 1 43 ASP n 1 44 PHE n 1 45 SER n 1 46 ALA n 1 47 THR n 1 48 TRP n 1 49 CYS n 1 50 GLY n 1 51 PRO n 1 52 CYS n 1 53 LYS n 1 54 MET n 1 55 ILE n 1 56 LYS n 1 57 PRO n 1 58 PHE n 1 59 PHE n 1 60 HIS n 1 61 SER n 1 62 LEU n 1 63 CYS n 1 64 ASP n 1 65 LYS n 1 66 TYR n 1 67 SER n 1 68 ASN n 1 69 VAL n 1 70 VAL n 1 71 PHE n 1 72 LEU n 1 73 GLU n 1 74 VAL n 1 75 ASP n 1 76 VAL n 1 77 ASP n 1 78 ASP n 1 79 CYS n 1 80 GLN n 1 81 ASP n 1 82 VAL n 1 83 ALA n 1 84 ALA n 1 85 ASP n 1 86 CYS n 1 87 GLU n 1 88 VAL n 1 89 LYS n 1 90 CYS n 1 91 MET n 1 92 PRO n 1 93 THR n 1 94 PHE n 1 95 GLN n 1 96 PHE n 1 97 TYR n 1 98 LYS n 1 99 LYS n 1 100 GLY n 1 101 GLN n 1 102 LYS n 1 103 VAL n 1 104 GLY n 1 105 GLU n 1 106 PHE n 1 107 SER n 1 108 GLY n 1 109 ALA n 1 110 ASN n 1 111 LYS n 1 112 GLU n 1 113 LYS n 1 114 LEU n 1 115 GLU n 1 116 ALA n 1 117 THR n 1 118 ILE n 1 119 THR n 1 120 GLU n 1 121 PHE n 1 122 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 122 _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Txn, Txn1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -16 ? ? ? A . n A 1 2 HIS 2 -15 ? ? ? A . n A 1 3 HIS 3 -14 ? ? ? A . n A 1 4 HIS 4 -13 ? ? ? A . n A 1 5 HIS 5 -12 ? ? ? A . n A 1 6 HIS 6 -11 ? ? ? A . n A 1 7 HIS 7 -10 ? ? ? A . n A 1 8 HIS 8 -9 ? ? ? A . n A 1 9 HIS 9 -8 ? ? ? A . n A 1 10 GLY 10 -7 ? ? ? A . n A 1 11 SER 11 -6 ? ? ? A . n A 1 12 GLU 12 -5 ? ? ? A . n A 1 13 ASN 13 -4 ? ? ? A . n A 1 14 LEU 14 -3 ? ? ? A . n A 1 15 TYR 15 -2 ? ? ? A . n A 1 16 PHE 16 -1 ? ? ? A . n A 1 17 GLN 17 0 ? ? ? A . n A 1 18 SER 18 1 1 SER SER A . n A 1 19 VAL 19 2 2 VAL VAL A . n A 1 20 LYS 20 3 3 LYS LYS A . n A 1 21 LEU 21 4 4 LEU LEU A . n A 1 22 ILE 22 5 5 ILE ILE A . n A 1 23 GLU 23 6 6 GLU GLU A . n A 1 24 SER 24 7 7 SER SER A . n A 1 25 LYS 25 8 8 LYS LYS A . n A 1 26 GLU 26 9 9 GLU GLU A . n A 1 27 ALA 27 10 10 ALA ALA A . n A 1 28 PHE 28 11 11 PHE PHE A . n A 1 29 GLN 29 12 12 GLN GLN A . n A 1 30 GLU 30 13 13 GLU GLU A . n A 1 31 ALA 31 14 14 ALA ALA A . n A 1 32 LEU 32 15 15 LEU LEU A . n A 1 33 ALA 33 16 16 ALA ALA A . n A 1 34 ALA 34 17 17 ALA ALA A . n A 1 35 ALA 35 18 18 ALA ALA A . n A 1 36 GLY 36 19 19 GLY GLY A . n A 1 37 ASP 37 20 20 ASP ASP A . n A 1 38 LYS 38 21 21 LYS LYS A . n A 1 39 LEU 39 22 22 LEU LEU A . n A 1 40 VAL 40 23 23 VAL VAL A . n A 1 41 VAL 41 24 24 VAL VAL A . n A 1 42 VAL 42 25 25 VAL VAL A . n A 1 43 ASP 43 26 26 ASP ASP A . n A 1 44 PHE 44 27 27 PHE PHE A . n A 1 45 SER 45 28 28 SER SER A . n A 1 46 ALA 46 29 29 ALA ALA A . n A 1 47 THR 47 30 30 THR THR A . n A 1 48 TRP 48 31 31 TRP TRP A . n A 1 49 CYS 49 32 32 CYS CYS A . n A 1 50 GLY 50 33 33 GLY GLY A . n A 1 51 PRO 51 34 34 PRO PRO A . n A 1 52 CYS 52 35 35 CYS CYS A . n A 1 53 LYS 53 36 36 LYS LYS A . n A 1 54 MET 54 37 37 MET MET A . n A 1 55 ILE 55 38 38 ILE ILE A . n A 1 56 LYS 56 39 39 LYS LYS A . n A 1 57 PRO 57 40 40 PRO PRO A . n A 1 58 PHE 58 41 41 PHE PHE A . n A 1 59 PHE 59 42 42 PHE PHE A . n A 1 60 HIS 60 43 43 HIS HIS A . n A 1 61 SER 61 44 44 SER SER A . n A 1 62 LEU 62 45 45 LEU LEU A . n A 1 63 CYS 63 46 46 CYS CYS A . n A 1 64 ASP 64 47 47 ASP ASP A . n A 1 65 LYS 65 48 48 LYS LYS A . n A 1 66 TYR 66 49 49 TYR TYR A . n A 1 67 SER 67 50 50 SER SER A . n A 1 68 ASN 68 51 51 ASN ASN A . n A 1 69 VAL 69 52 52 VAL VAL A . n A 1 70 VAL 70 53 53 VAL VAL A . n A 1 71 PHE 71 54 54 PHE PHE A . n A 1 72 LEU 72 55 55 LEU LEU A . n A 1 73 GLU 73 56 56 GLU GLU A . n A 1 74 VAL 74 57 57 VAL VAL A . n A 1 75 ASP 75 58 58 ASP ASP A . n A 1 76 VAL 76 59 59 VAL VAL A . n A 1 77 ASP 77 60 60 ASP ASP A . n A 1 78 ASP 78 61 61 ASP ASP A . n A 1 79 CYS 79 62 62 CYS CYS A . n A 1 80 GLN 80 63 63 GLN GLN A . n A 1 81 ASP 81 64 64 ASP ASP A . n A 1 82 VAL 82 65 65 VAL VAL A . n A 1 83 ALA 83 66 66 ALA ALA A . n A 1 84 ALA 84 67 67 ALA ALA A . n A 1 85 ASP 85 68 68 ASP ASP A . n A 1 86 CYS 86 69 69 CYS CYS A . n A 1 87 GLU 87 70 70 GLU GLU A . n A 1 88 VAL 88 71 71 VAL VAL A . n A 1 89 LYS 89 72 72 LYS LYS A . n A 1 90 CYS 90 73 73 CYS CYS A . n A 1 91 MET 91 74 74 MET MET A . n A 1 92 PRO 92 75 75 PRO PRO A . n A 1 93 THR 93 76 76 THR THR A . n A 1 94 PHE 94 77 77 PHE PHE A . n A 1 95 GLN 95 78 78 GLN GLN A . n A 1 96 PHE 96 79 79 PHE PHE A . n A 1 97 TYR 97 80 80 TYR TYR A . n A 1 98 LYS 98 81 81 LYS LYS A . n A 1 99 LYS 99 82 82 LYS LYS A . n A 1 100 GLY 100 83 83 GLY GLY A . n A 1 101 GLN 101 84 84 GLN GLN A . n A 1 102 LYS 102 85 85 LYS LYS A . n A 1 103 VAL 103 86 86 VAL VAL A . n A 1 104 GLY 104 87 87 GLY GLY A . n A 1 105 GLU 105 88 88 GLU GLU A . n A 1 106 PHE 106 89 89 PHE PHE A . n A 1 107 SER 107 90 90 SER SER A . n A 1 108 GLY 108 91 91 GLY GLY A . n A 1 109 ALA 109 92 92 ALA ALA A . n A 1 110 ASN 110 93 93 ASN ASN A . n A 1 111 LYS 111 94 94 LYS LYS A . n A 1 112 GLU 112 95 95 GLU GLU A . n A 1 113 LYS 113 96 96 LYS LYS A . n A 1 114 LEU 114 97 97 LEU LEU A . n A 1 115 GLU 115 98 98 GLU GLU A . n A 1 116 ALA 116 99 99 ALA ALA A . n A 1 117 THR 117 100 100 THR THR A . n A 1 118 ILE 118 101 101 ILE ILE A . n A 1 119 THR 119 102 102 THR THR A . n A 1 120 GLU 120 103 103 GLU GLU A . n A 1 121 PHE 121 104 104 PHE PHE A . n A 1 122 ALA 122 105 105 ALA ALA A . n B 1 1 MET 1 -16 ? ? ? B . n B 1 2 HIS 2 -15 ? ? ? B . n B 1 3 HIS 3 -14 ? ? ? B . n B 1 4 HIS 4 -13 ? ? ? B . n B 1 5 HIS 5 -12 ? ? ? B . n B 1 6 HIS 6 -11 ? ? ? B . n B 1 7 HIS 7 -10 ? ? ? B . n B 1 8 HIS 8 -9 ? ? ? B . n B 1 9 HIS 9 -8 ? ? ? B . n B 1 10 GLY 10 -7 ? ? ? B . n B 1 11 SER 11 -6 ? ? ? B . n B 1 12 GLU 12 -5 ? ? ? B . n B 1 13 ASN 13 -4 ? ? ? B . n B 1 14 LEU 14 -3 ? ? ? B . n B 1 15 TYR 15 -2 ? ? ? B . n B 1 16 PHE 16 -1 ? ? ? B . n B 1 17 GLN 17 0 ? ? ? B . n B 1 18 SER 18 1 1 SER SER B . n B 1 19 VAL 19 2 2 VAL VAL B . n B 1 20 LYS 20 3 3 LYS LYS B . n B 1 21 LEU 21 4 4 LEU LEU B . n B 1 22 ILE 22 5 5 ILE ILE B . n B 1 23 GLU 23 6 6 GLU GLU B . n B 1 24 SER 24 7 7 SER SER B . n B 1 25 LYS 25 8 8 LYS LYS B . n B 1 26 GLU 26 9 9 GLU GLU B . n B 1 27 ALA 27 10 10 ALA ALA B . n B 1 28 PHE 28 11 11 PHE PHE B . n B 1 29 GLN 29 12 12 GLN GLN B . n B 1 30 GLU 30 13 13 GLU GLU B . n B 1 31 ALA 31 14 14 ALA ALA B . n B 1 32 LEU 32 15 15 LEU LEU B . n B 1 33 ALA 33 16 16 ALA ALA B . n B 1 34 ALA 34 17 17 ALA ALA B . n B 1 35 ALA 35 18 18 ALA ALA B . n B 1 36 GLY 36 19 19 GLY GLY B . n B 1 37 ASP 37 20 20 ASP ASP B . n B 1 38 LYS 38 21 21 LYS LYS B . n B 1 39 LEU 39 22 22 LEU LEU B . n B 1 40 VAL 40 23 23 VAL VAL B . n B 1 41 VAL 41 24 24 VAL VAL B . n B 1 42 VAL 42 25 25 VAL VAL B . n B 1 43 ASP 43 26 26 ASP ASP B . n B 1 44 PHE 44 27 27 PHE PHE B . n B 1 45 SER 45 28 28 SER SER B . n B 1 46 ALA 46 29 29 ALA ALA B . n B 1 47 THR 47 30 30 THR THR B . n B 1 48 TRP 48 31 31 TRP TRP B . n B 1 49 CYS 49 32 32 CYS CYS B . n B 1 50 GLY 50 33 33 GLY GLY B . n B 1 51 PRO 51 34 34 PRO PRO B . n B 1 52 CYS 52 35 35 CYS CYS B . n B 1 53 LYS 53 36 36 LYS LYS B . n B 1 54 MET 54 37 37 MET MET B . n B 1 55 ILE 55 38 38 ILE ILE B . n B 1 56 LYS 56 39 39 LYS LYS B . n B 1 57 PRO 57 40 40 PRO PRO B . n B 1 58 PHE 58 41 41 PHE PHE B . n B 1 59 PHE 59 42 42 PHE PHE B . n B 1 60 HIS 60 43 43 HIS HIS B . n B 1 61 SER 61 44 44 SER SER B . n B 1 62 LEU 62 45 45 LEU LEU B . n B 1 63 CYS 63 46 46 CYS CYS B . n B 1 64 ASP 64 47 47 ASP ASP B . n B 1 65 LYS 65 48 48 LYS LYS B . n B 1 66 TYR 66 49 49 TYR TYR B . n B 1 67 SER 67 50 50 SER SER B . n B 1 68 ASN 68 51 51 ASN ASN B . n B 1 69 VAL 69 52 52 VAL VAL B . n B 1 70 VAL 70 53 53 VAL VAL B . n B 1 71 PHE 71 54 54 PHE PHE B . n B 1 72 LEU 72 55 55 LEU LEU B . n B 1 73 GLU 73 56 56 GLU GLU B . n B 1 74 VAL 74 57 57 VAL VAL B . n B 1 75 ASP 75 58 58 ASP ASP B . n B 1 76 VAL 76 59 59 VAL VAL B . n B 1 77 ASP 77 60 60 ASP ASP B . n B 1 78 ASP 78 61 61 ASP ASP B . n B 1 79 CYS 79 62 62 CYS CYS B . n B 1 80 GLN 80 63 63 GLN GLN B . n B 1 81 ASP 81 64 64 ASP ASP B . n B 1 82 VAL 82 65 65 VAL VAL B . n B 1 83 ALA 83 66 66 ALA ALA B . n B 1 84 ALA 84 67 67 ALA ALA B . n B 1 85 ASP 85 68 68 ASP ASP B . n B 1 86 CYS 86 69 69 CYS CYS B . n B 1 87 GLU 87 70 70 GLU GLU B . n B 1 88 VAL 88 71 71 VAL VAL B . n B 1 89 LYS 89 72 72 LYS LYS B . n B 1 90 CYS 90 73 73 CYS CYS B . n B 1 91 MET 91 74 74 MET MET B . n B 1 92 PRO 92 75 75 PRO PRO B . n B 1 93 THR 93 76 76 THR THR B . n B 1 94 PHE 94 77 77 PHE PHE B . n B 1 95 GLN 95 78 78 GLN GLN B . n B 1 96 PHE 96 79 79 PHE PHE B . n B 1 97 TYR 97 80 80 TYR TYR B . n B 1 98 LYS 98 81 81 LYS LYS B . n B 1 99 LYS 99 82 82 LYS LYS B . n B 1 100 GLY 100 83 83 GLY GLY B . n B 1 101 GLN 101 84 84 GLN GLN B . n B 1 102 LYS 102 85 85 LYS LYS B . n B 1 103 VAL 103 86 86 VAL VAL B . n B 1 104 GLY 104 87 87 GLY GLY B . n B 1 105 GLU 105 88 88 GLU GLU B . n B 1 106 PHE 106 89 89 PHE PHE B . n B 1 107 SER 107 90 90 SER SER B . n B 1 108 GLY 108 91 91 GLY GLY B . n B 1 109 ALA 109 92 92 ALA ALA B . n B 1 110 ASN 110 93 93 ASN ASN B . n B 1 111 LYS 111 94 94 LYS LYS B . n B 1 112 GLU 112 95 95 GLU GLU B . n B 1 113 LYS 113 96 96 LYS LYS B . n B 1 114 LEU 114 97 97 LEU LEU B . n B 1 115 GLU 115 98 98 GLU GLU B . n B 1 116 ALA 116 99 99 ALA ALA B . n B 1 117 THR 117 100 100 THR THR B . n B 1 118 ILE 118 101 101 ILE ILE B . n B 1 119 THR 119 102 102 THR THR B . n B 1 120 GLU 120 103 103 GLU GLU B . n B 1 121 PHE 121 104 104 PHE PHE B . n B 1 122 ALA 122 105 105 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 20 HOH HOH A . C 2 HOH 2 202 64 HOH HOH A . C 2 HOH 3 203 36 HOH HOH A . C 2 HOH 4 204 53 HOH HOH A . C 2 HOH 5 205 35 HOH HOH A . C 2 HOH 6 206 39 HOH HOH A . C 2 HOH 7 207 65 HOH HOH A . C 2 HOH 8 208 49 HOH HOH A . C 2 HOH 9 209 54 HOH HOH A . C 2 HOH 10 210 38 HOH HOH A . C 2 HOH 11 211 3 HOH HOH A . C 2 HOH 12 212 43 HOH HOH A . C 2 HOH 13 213 78 HOH HOH A . C 2 HOH 14 214 1 HOH HOH A . C 2 HOH 15 215 87 HOH HOH A . C 2 HOH 16 216 102 HOH HOH A . C 2 HOH 17 217 42 HOH HOH A . C 2 HOH 18 218 57 HOH HOH A . C 2 HOH 19 219 80 HOH HOH A . C 2 HOH 20 220 17 HOH HOH A . C 2 HOH 21 221 85 HOH HOH A . C 2 HOH 22 222 50 HOH HOH A . C 2 HOH 23 223 41 HOH HOH A . C 2 HOH 24 224 23 HOH HOH A . C 2 HOH 25 225 4 HOH HOH A . C 2 HOH 26 226 8 HOH HOH A . C 2 HOH 27 227 29 HOH HOH A . C 2 HOH 28 228 101 HOH HOH A . C 2 HOH 29 229 67 HOH HOH A . C 2 HOH 30 230 24 HOH HOH A . C 2 HOH 31 231 7 HOH HOH A . C 2 HOH 32 232 37 HOH HOH A . C 2 HOH 33 233 32 HOH HOH A . C 2 HOH 34 234 30 HOH HOH A . C 2 HOH 35 235 40 HOH HOH A . C 2 HOH 36 236 2 HOH HOH A . C 2 HOH 37 237 46 HOH HOH A . C 2 HOH 38 238 13 HOH HOH A . C 2 HOH 39 239 93 HOH HOH A . C 2 HOH 40 240 77 HOH HOH A . C 2 HOH 41 241 47 HOH HOH A . C 2 HOH 42 242 19 HOH HOH A . C 2 HOH 43 243 62 HOH HOH A . C 2 HOH 44 244 97 HOH HOH A . C 2 HOH 45 245 96 HOH HOH A . C 2 HOH 46 246 60 HOH HOH A . C 2 HOH 47 247 63 HOH HOH A . C 2 HOH 48 248 72 HOH HOH A . D 2 HOH 1 201 55 HOH HOH B . D 2 HOH 2 202 66 HOH HOH B . D 2 HOH 3 203 21 HOH HOH B . D 2 HOH 4 204 45 HOH HOH B . D 2 HOH 5 205 88 HOH HOH B . D 2 HOH 6 206 6 HOH HOH B . D 2 HOH 7 207 51 HOH HOH B . D 2 HOH 8 208 69 HOH HOH B . D 2 HOH 9 209 15 HOH HOH B . D 2 HOH 10 210 26 HOH HOH B . D 2 HOH 11 211 48 HOH HOH B . D 2 HOH 12 212 61 HOH HOH B . D 2 HOH 13 213 12 HOH HOH B . D 2 HOH 14 214 100 HOH HOH B . D 2 HOH 15 215 22 HOH HOH B . D 2 HOH 16 216 76 HOH HOH B . D 2 HOH 17 217 75 HOH HOH B . D 2 HOH 18 218 98 HOH HOH B . D 2 HOH 19 219 58 HOH HOH B . D 2 HOH 20 220 86 HOH HOH B . D 2 HOH 21 221 28 HOH HOH B . D 2 HOH 22 222 27 HOH HOH B . D 2 HOH 23 223 89 HOH HOH B . D 2 HOH 24 224 31 HOH HOH B . D 2 HOH 25 225 52 HOH HOH B . D 2 HOH 26 226 99 HOH HOH B . D 2 HOH 27 227 68 HOH HOH B . D 2 HOH 28 228 34 HOH HOH B . D 2 HOH 29 229 70 HOH HOH B . D 2 HOH 30 230 83 HOH HOH B . D 2 HOH 31 231 56 HOH HOH B . D 2 HOH 32 232 14 HOH HOH B . D 2 HOH 33 233 5 HOH HOH B . D 2 HOH 34 234 90 HOH HOH B . D 2 HOH 35 235 79 HOH HOH B . D 2 HOH 36 236 91 HOH HOH B . D 2 HOH 37 237 18 HOH HOH B . D 2 HOH 38 238 95 HOH HOH B . D 2 HOH 39 239 16 HOH HOH B . D 2 HOH 40 240 59 HOH HOH B . D 2 HOH 41 241 103 HOH HOH B . D 2 HOH 42 242 25 HOH HOH B . D 2 HOH 43 243 33 HOH HOH B . D 2 HOH 44 244 44 HOH HOH B . D 2 HOH 45 245 71 HOH HOH B . D 2 HOH 46 246 84 HOH HOH B . D 2 HOH 47 247 82 HOH HOH B . D 2 HOH 48 248 10 HOH HOH B . D 2 HOH 49 249 73 HOH HOH B . D 2 HOH 50 250 74 HOH HOH B . D 2 HOH 51 251 9 HOH HOH B . D 2 HOH 52 252 94 HOH HOH B . D 2 HOH 53 253 92 HOH HOH B . D 2 HOH 54 254 11 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0405 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 101.680 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8YS1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.640 _cell.length_a_esd ? _cell.length_b 74.300 _cell.length_b_esd ? _cell.length_c 53.950 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YS1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '15–16% PEG-3350, 9% glycerol, and 0.1 M citric acid (pH 3.5)' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details Cryostream _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-11-02 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si double crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8YS1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.11 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13638 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.75 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.07 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.113 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.09699999999999999 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.11 2.24 ? ? ? ? ? ? 2204 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.787 ? ? 1 1 0.755 ? ? ? ? 0.672 ? ? ? ? ? ? ? ? ? 2.24 2.39 ? ? ? ? ? ? 2005 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.542 ? ? 2 1 0.8440000000000001 ? ? ? ? 0.46299999999999997 ? ? ? ? ? ? ? ? ? 2.39 2.5 ? ? ? ? ? ? 1180 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.45 ? ? 3 1 0.884 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? ? 2.50 3.0 ? ? ? ? ? ? 3457 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.23399999999999999 ? ? 4 1 0.963 ? ? ? ? 0.201 ? ? ? ? ? ? ? ? ? 3.00 4.0 ? ? ? ? ? ? 2745 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.07 ? ? 5 1 0.997 ? ? ? ? 0.06 ? ? ? ? ? ? ? ? ? 4.00 6.0 ? ? ? ? ? ? 1429 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.03 ? ? 6 1 0.9990000000000001 ? ? ? ? 0.026000000000000002 ? ? ? ? ? ? ? ? ? 6.00 50.0 ? ? ? ? ? ? 618 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.024 ? ? 7 1 1.0 ? ? ? ? 0.02 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] -0.997 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.113 _refine.aniso_B[2][2] -0.344 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] 1.279 _refine.B_iso_max ? _refine.B_iso_mean 29.754 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YS1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.112 _refine.ls_d_res_low 43.057 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13637 _refine.ls_number_reflns_R_free 682 _refine.ls_number_reflns_R_work 12955 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.810 _refine.ls_percent_reflns_R_free 5.001 _refine.ls_R_factor_all 0.184 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2299 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1818 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4OO5 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.209 _refine.pdbx_overall_ESU_R_Free 0.181 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.856 _refine.overall_SU_ML 0.146 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.112 _refine_hist.d_res_low 43.057 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1730 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1628 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.012 1660 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 1560 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.369 1.629 2236 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.466 1.575 3628 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.040 5.000 208 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 16.451 10.000 296 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.407 10.000 72 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.062 0.200 248 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 1868 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 348 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.232 0.200 306 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.192 0.200 1362 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.181 0.200 826 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.080 0.200 919 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.214 0.200 93 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.206 0.200 17 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.226 0.200 42 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.185 0.200 7 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.581 2.866 838 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.581 2.866 838 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.850 5.142 1044 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.848 5.142 1045 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.847 3.276 822 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.845 3.275 823 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 5.970 5.789 1192 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.967 5.788 1193 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.767 33.285 1856 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 7.767 33.079 1845 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.112 2.167 1017 . 50 962 99.5084 . 0.282 . . 0.280 . . . . . 0.261 . 20 . 0.942 0.915 0.323 'X-RAY DIFFRACTION' 2.167 2.226 977 . 49 928 100.0000 . 0.266 . . 0.264 . . . . . 0.233 . 20 . 0.951 0.944 0.287 'X-RAY DIFFRACTION' 2.226 2.290 930 . 47 881 99.7849 . 0.244 . . 0.243 . . . . . 0.212 . 20 . 0.961 0.946 0.267 'X-RAY DIFFRACTION' 2.290 2.361 964 . 48 915 99.8963 . 0.244 . . 0.241 . . . . . 0.213 . 20 . 0.961 0.938 0.314 'X-RAY DIFFRACTION' 2.361 2.438 861 . 43 818 100.0000 . 0.246 . . 0.244 . . . . . 0.216 . 20 . 0.962 0.947 0.288 'X-RAY DIFFRACTION' 2.438 2.523 880 . 44 836 100.0000 . 0.212 . . 0.209 . . . . . 0.178 . 20 . 0.972 0.957 0.272 'X-RAY DIFFRACTION' 2.523 2.618 823 . 41 781 99.8785 . 0.196 . . 0.194 . . . . . 0.155 . 20 . 0.977 0.967 0.245 'X-RAY DIFFRACTION' 2.618 2.724 807 . 40 766 99.8761 . 0.194 . . 0.191 . . . . . 0.158 . 20 . 0.977 0.961 0.243 'X-RAY DIFFRACTION' 2.724 2.845 778 . 39 736 99.6144 . 0.187 . . 0.184 . . . . . 0.150 . 20 . 0.978 0.967 0.257 'X-RAY DIFFRACTION' 2.845 2.983 744 . 37 707 100.0000 . 0.175 . . 0.173 . . . . . 0.141 . 20 . 0.981 0.974 0.203 'X-RAY DIFFRACTION' 2.983 3.144 692 . 35 656 99.8555 . 0.156 . . 0.154 . . . . . 0.131 . 20 . 0.985 0.979 0.197 'X-RAY DIFFRACTION' 3.144 3.333 678 . 33 642 99.5575 . 0.155 . . 0.151 . . . . . 0.130 . 20 . 0.986 0.975 0.220 'X-RAY DIFFRACTION' 3.333 3.562 625 . 32 591 99.6800 . 0.162 . . 0.157 . . . . . 0.139 . 20 . 0.985 0.969 0.264 'X-RAY DIFFRACTION' 3.562 3.845 600 . 30 569 99.8333 . 0.167 . . 0.164 . . . . . 0.148 . 20 . 0.984 0.978 0.215 'X-RAY DIFFRACTION' 3.845 4.209 529 . 26 503 100.0000 . 0.158 . . 0.156 . . . . . 0.143 . 20 . 0.984 0.981 0.187 'X-RAY DIFFRACTION' 4.209 4.700 482 . 24 456 99.5851 . 0.141 . . 0.136 . . . . . 0.129 . 20 . 0.989 0.974 0.237 'X-RAY DIFFRACTION' 4.700 5.416 439 . 22 416 99.7722 . 0.161 . . 0.160 . . . . . 0.148 . 20 . 0.986 0.986 0.177 'X-RAY DIFFRACTION' 5.416 6.607 373 . 19 354 100.0000 . 0.183 . . 0.183 . . . . . 0.160 . 20 . 0.981 0.977 0.182 'X-RAY DIFFRACTION' 6.607 9.236 288 . 14 272 99.3056 . 0.161 . . 0.158 . . . . . 0.151 . 20 . 0.986 0.976 0.202 'X-RAY DIFFRACTION' 9.236 43.057 175 . 9 166 100.0000 . 0.180 . . 0.184 . . . . . 0.216 . 20 . 0.984 0.991 0.104 # _struct.entry_id 8YS1 _struct.title 'Crystal structure of rat thioredoxin, Wild-type' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YS1 _struct_keywords.text 'ELECTRON TRANSPORT' _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THIO_RAT _struct_ref.pdbx_db_accession P11232 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYK KGQKVGEFSGANKEKLEATITEFA ; _struct_ref.pdbx_align_begin 2 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8YS1 A 19 ? 122 ? P11232 2 ? 105 ? 2 105 2 1 8YS1 B 19 ? 122 ? P11232 2 ? 105 ? 2 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8YS1 MET A 1 ? UNP P11232 ? ? 'initiating methionine' -16 1 1 8YS1 HIS A 2 ? UNP P11232 ? ? 'expression tag' -15 2 1 8YS1 HIS A 3 ? UNP P11232 ? ? 'expression tag' -14 3 1 8YS1 HIS A 4 ? UNP P11232 ? ? 'expression tag' -13 4 1 8YS1 HIS A 5 ? UNP P11232 ? ? 'expression tag' -12 5 1 8YS1 HIS A 6 ? UNP P11232 ? ? 'expression tag' -11 6 1 8YS1 HIS A 7 ? UNP P11232 ? ? 'expression tag' -10 7 1 8YS1 HIS A 8 ? UNP P11232 ? ? 'expression tag' -9 8 1 8YS1 HIS A 9 ? UNP P11232 ? ? 'expression tag' -8 9 1 8YS1 GLY A 10 ? UNP P11232 ? ? 'expression tag' -7 10 1 8YS1 SER A 11 ? UNP P11232 ? ? 'expression tag' -6 11 1 8YS1 GLU A 12 ? UNP P11232 ? ? 'expression tag' -5 12 1 8YS1 ASN A 13 ? UNP P11232 ? ? 'expression tag' -4 13 1 8YS1 LEU A 14 ? UNP P11232 ? ? 'expression tag' -3 14 1 8YS1 TYR A 15 ? UNP P11232 ? ? 'expression tag' -2 15 1 8YS1 PHE A 16 ? UNP P11232 ? ? 'expression tag' -1 16 1 8YS1 GLN A 17 ? UNP P11232 ? ? 'expression tag' 0 17 1 8YS1 SER A 18 ? UNP P11232 ? ? 'expression tag' 1 18 2 8YS1 MET B 1 ? UNP P11232 ? ? 'initiating methionine' -16 19 2 8YS1 HIS B 2 ? UNP P11232 ? ? 'expression tag' -15 20 2 8YS1 HIS B 3 ? UNP P11232 ? ? 'expression tag' -14 21 2 8YS1 HIS B 4 ? UNP P11232 ? ? 'expression tag' -13 22 2 8YS1 HIS B 5 ? UNP P11232 ? ? 'expression tag' -12 23 2 8YS1 HIS B 6 ? UNP P11232 ? ? 'expression tag' -11 24 2 8YS1 HIS B 7 ? UNP P11232 ? ? 'expression tag' -10 25 2 8YS1 HIS B 8 ? UNP P11232 ? ? 'expression tag' -9 26 2 8YS1 HIS B 9 ? UNP P11232 ? ? 'expression tag' -8 27 2 8YS1 GLY B 10 ? UNP P11232 ? ? 'expression tag' -7 28 2 8YS1 SER B 11 ? UNP P11232 ? ? 'expression tag' -6 29 2 8YS1 GLU B 12 ? UNP P11232 ? ? 'expression tag' -5 30 2 8YS1 ASN B 13 ? UNP P11232 ? ? 'expression tag' -4 31 2 8YS1 LEU B 14 ? UNP P11232 ? ? 'expression tag' -3 32 2 8YS1 TYR B 15 ? UNP P11232 ? ? 'expression tag' -2 33 2 8YS1 PHE B 16 ? UNP P11232 ? ? 'expression tag' -1 34 2 8YS1 GLN B 17 ? UNP P11232 ? ? 'expression tag' 0 35 2 8YS1 SER B 18 ? UNP P11232 ? ? 'expression tag' 1 36 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 24 ? ALA A 35 ? SER A 7 ALA A 18 1 ? 12 HELX_P HELX_P2 AA2 CYS A 49 ? TYR A 66 ? CYS A 32 TYR A 49 1 ? 18 HELX_P HELX_P3 AA3 CYS A 79 ? CYS A 86 ? CYS A 62 CYS A 69 1 ? 8 HELX_P HELX_P4 AA4 ASN A 110 ? ALA A 122 ? ASN A 93 ALA A 105 1 ? 13 HELX_P HELX_P5 AA5 SER B 24 ? ALA B 35 ? SER B 7 ALA B 18 1 ? 12 HELX_P HELX_P6 AA6 CYS B 49 ? TYR B 66 ? CYS B 32 TYR B 49 1 ? 18 HELX_P HELX_P7 AA7 CYS B 79 ? CYS B 86 ? CYS B 62 CYS B 69 1 ? 8 HELX_P HELX_P8 AA8 ASN B 110 ? ALA B 122 ? ASN B 93 ALA B 105 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 90 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 73 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 73 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.165 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 90 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id B _pdbx_modification_feature.modified_residue_label_seq_id 90 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 73 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id B _pdbx_modification_feature.modified_residue_auth_seq_id 73 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MET 91 A . ? MET 74 A PRO 92 A ? PRO 75 A 1 -5.77 2 MET 91 B . ? MET 74 B PRO 92 B ? PRO 75 B 1 -3.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 20 ? ILE A 22 ? LYS A 3 ILE A 5 AA1 2 VAL A 70 ? ASP A 75 ? VAL A 53 ASP A 58 AA1 3 VAL A 40 ? SER A 45 ? VAL A 23 SER A 28 AA1 4 THR A 93 ? LYS A 98 ? THR A 76 LYS A 81 AA1 5 GLN A 101 ? SER A 107 ? GLN A 84 SER A 90 AA2 1 LYS B 20 ? ILE B 22 ? LYS B 3 ILE B 5 AA2 2 VAL B 69 ? ASP B 75 ? VAL B 52 ASP B 58 AA2 3 LEU B 39 ? SER B 45 ? LEU B 22 SER B 28 AA2 4 THR B 93 ? LYS B 98 ? THR B 76 LYS B 81 AA2 5 GLN B 101 ? SER B 107 ? GLN B 84 SER B 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 22 ? N ILE A 5 O GLU A 73 ? O GLU A 56 AA1 2 3 O VAL A 74 ? O VAL A 57 N ASP A 43 ? N ASP A 26 AA1 3 4 N PHE A 44 ? N PHE A 27 O THR A 93 ? O THR A 76 AA1 4 5 N PHE A 94 ? N PHE A 77 O PHE A 106 ? O PHE A 89 AA2 1 2 N ILE B 22 ? N ILE B 5 O GLU B 73 ? O GLU B 56 AA2 2 3 O VAL B 70 ? O VAL B 53 N VAL B 41 ? N VAL B 24 AA2 3 4 N PHE B 44 ? N PHE B 27 O THR B 93 ? O THR B 76 AA2 4 5 N PHE B 94 ? N PHE B 77 O PHE B 106 ? O PHE B 89 # _pdbx_entry_details.entry_id 8YS1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 88 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -170.87 _pdbx_validate_torsion.psi 140.14 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -16 ? A MET 1 2 1 Y 1 A HIS -15 ? A HIS 2 3 1 Y 1 A HIS -14 ? A HIS 3 4 1 Y 1 A HIS -13 ? A HIS 4 5 1 Y 1 A HIS -12 ? A HIS 5 6 1 Y 1 A HIS -11 ? A HIS 6 7 1 Y 1 A HIS -10 ? A HIS 7 8 1 Y 1 A HIS -9 ? A HIS 8 9 1 Y 1 A HIS -8 ? A HIS 9 10 1 Y 1 A GLY -7 ? A GLY 10 11 1 Y 1 A SER -6 ? A SER 11 12 1 Y 1 A GLU -5 ? A GLU 12 13 1 Y 1 A ASN -4 ? A ASN 13 14 1 Y 1 A LEU -3 ? A LEU 14 15 1 Y 1 A TYR -2 ? A TYR 15 16 1 Y 1 A PHE -1 ? A PHE 16 17 1 Y 1 A GLN 0 ? A GLN 17 18 1 Y 1 B MET -16 ? B MET 1 19 1 Y 1 B HIS -15 ? B HIS 2 20 1 Y 1 B HIS -14 ? B HIS 3 21 1 Y 1 B HIS -13 ? B HIS 4 22 1 Y 1 B HIS -12 ? B HIS 5 23 1 Y 1 B HIS -11 ? B HIS 6 24 1 Y 1 B HIS -10 ? B HIS 7 25 1 Y 1 B HIS -9 ? B HIS 8 26 1 Y 1 B HIS -8 ? B HIS 9 27 1 Y 1 B GLY -7 ? B GLY 10 28 1 Y 1 B SER -6 ? B SER 11 29 1 Y 1 B GLU -5 ? B GLU 12 30 1 Y 1 B ASN -4 ? B ASN 13 31 1 Y 1 B LEU -3 ? B LEU 14 32 1 Y 1 B TYR -2 ? B TYR 15 33 1 Y 1 B PHE -1 ? B PHE 16 34 1 Y 1 B GLN 0 ? B GLN 17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 GLN N N N N 61 GLN CA C N S 62 GLN C C N N 63 GLN O O N N 64 GLN CB C N N 65 GLN CG C N N 66 GLN CD C N N 67 GLN OE1 O N N 68 GLN NE2 N N N 69 GLN OXT O N N 70 GLN H H N N 71 GLN H2 H N N 72 GLN HA H N N 73 GLN HB2 H N N 74 GLN HB3 H N N 75 GLN HG2 H N N 76 GLN HG3 H N N 77 GLN HE21 H N N 78 GLN HE22 H N N 79 GLN HXT H N N 80 GLU N N N N 81 GLU CA C N S 82 GLU C C N N 83 GLU O O N N 84 GLU CB C N N 85 GLU CG C N N 86 GLU CD C N N 87 GLU OE1 O N N 88 GLU OE2 O N N 89 GLU OXT O N N 90 GLU H H N N 91 GLU H2 H N N 92 GLU HA H N N 93 GLU HB2 H N N 94 GLU HB3 H N N 95 GLU HG2 H N N 96 GLU HG3 H N N 97 GLU HE2 H N N 98 GLU HXT H N N 99 GLY N N N N 100 GLY CA C N N 101 GLY C C N N 102 GLY O O N N 103 GLY OXT O N N 104 GLY H H N N 105 GLY H2 H N N 106 GLY HA2 H N N 107 GLY HA3 H N N 108 GLY HXT H N N 109 HIS N N N N 110 HIS CA C N S 111 HIS C C N N 112 HIS O O N N 113 HIS CB C N N 114 HIS CG C Y N 115 HIS ND1 N Y N 116 HIS CD2 C Y N 117 HIS CE1 C Y N 118 HIS NE2 N Y N 119 HIS OXT O N N 120 HIS H H N N 121 HIS H2 H N N 122 HIS HA H N N 123 HIS HB2 H N N 124 HIS HB3 H N N 125 HIS HD1 H N N 126 HIS HD2 H N N 127 HIS HE1 H N N 128 HIS HE2 H N N 129 HIS HXT H N N 130 HOH O O N N 131 HOH H1 H N N 132 HOH H2 H N N 133 ILE N N N N 134 ILE CA C N S 135 ILE C C N N 136 ILE O O N N 137 ILE CB C N S 138 ILE CG1 C N N 139 ILE CG2 C N N 140 ILE CD1 C N N 141 ILE OXT O N N 142 ILE H H N N 143 ILE H2 H N N 144 ILE HA H N N 145 ILE HB H N N 146 ILE HG12 H N N 147 ILE HG13 H N N 148 ILE HG21 H N N 149 ILE HG22 H N N 150 ILE HG23 H N N 151 ILE HD11 H N N 152 ILE HD12 H N N 153 ILE HD13 H N N 154 ILE HXT H N N 155 LEU N N N N 156 LEU CA C N S 157 LEU C C N N 158 LEU O O N N 159 LEU CB C N N 160 LEU CG C N N 161 LEU CD1 C N N 162 LEU CD2 C N N 163 LEU OXT O N N 164 LEU H H N N 165 LEU H2 H N N 166 LEU HA H N N 167 LEU HB2 H N N 168 LEU HB3 H N N 169 LEU HG H N N 170 LEU HD11 H N N 171 LEU HD12 H N N 172 LEU HD13 H N N 173 LEU HD21 H N N 174 LEU HD22 H N N 175 LEU HD23 H N N 176 LEU HXT H N N 177 LYS N N N N 178 LYS CA C N S 179 LYS C C N N 180 LYS O O N N 181 LYS CB C N N 182 LYS CG C N N 183 LYS CD C N N 184 LYS CE C N N 185 LYS NZ N N N 186 LYS OXT O N N 187 LYS H H N N 188 LYS H2 H N N 189 LYS HA H N N 190 LYS HB2 H N N 191 LYS HB3 H N N 192 LYS HG2 H N N 193 LYS HG3 H N N 194 LYS HD2 H N N 195 LYS HD3 H N N 196 LYS HE2 H N N 197 LYS HE3 H N N 198 LYS HZ1 H N N 199 LYS HZ2 H N N 200 LYS HZ3 H N N 201 LYS HXT H N N 202 MET N N N N 203 MET CA C N S 204 MET C C N N 205 MET O O N N 206 MET CB C N N 207 MET CG C N N 208 MET SD S N N 209 MET CE C N N 210 MET OXT O N N 211 MET H H N N 212 MET H2 H N N 213 MET HA H N N 214 MET HB2 H N N 215 MET HB3 H N N 216 MET HG2 H N N 217 MET HG3 H N N 218 MET HE1 H N N 219 MET HE2 H N N 220 MET HE3 H N N 221 MET HXT H N N 222 PHE N N N N 223 PHE CA C N S 224 PHE C C N N 225 PHE O O N N 226 PHE CB C N N 227 PHE CG C Y N 228 PHE CD1 C Y N 229 PHE CD2 C Y N 230 PHE CE1 C Y N 231 PHE CE2 C Y N 232 PHE CZ C Y N 233 PHE OXT O N N 234 PHE H H N N 235 PHE H2 H N N 236 PHE HA H N N 237 PHE HB2 H N N 238 PHE HB3 H N N 239 PHE HD1 H N N 240 PHE HD2 H N N 241 PHE HE1 H N N 242 PHE HE2 H N N 243 PHE HZ H N N 244 PHE HXT H N N 245 PRO N N N N 246 PRO CA C N S 247 PRO C C N N 248 PRO O O N N 249 PRO CB C N N 250 PRO CG C N N 251 PRO CD C N N 252 PRO OXT O N N 253 PRO H H N N 254 PRO HA H N N 255 PRO HB2 H N N 256 PRO HB3 H N N 257 PRO HG2 H N N 258 PRO HG3 H N N 259 PRO HD2 H N N 260 PRO HD3 H N N 261 PRO HXT H N N 262 SER N N N N 263 SER CA C N S 264 SER C C N N 265 SER O O N N 266 SER CB C N N 267 SER OG O N N 268 SER OXT O N N 269 SER H H N N 270 SER H2 H N N 271 SER HA H N N 272 SER HB2 H N N 273 SER HB3 H N N 274 SER HG H N N 275 SER HXT H N N 276 THR N N N N 277 THR CA C N S 278 THR C C N N 279 THR O O N N 280 THR CB C N R 281 THR OG1 O N N 282 THR CG2 C N N 283 THR OXT O N N 284 THR H H N N 285 THR H2 H N N 286 THR HA H N N 287 THR HB H N N 288 THR HG1 H N N 289 THR HG21 H N N 290 THR HG22 H N N 291 THR HG23 H N N 292 THR HXT H N N 293 TRP N N N N 294 TRP CA C N S 295 TRP C C N N 296 TRP O O N N 297 TRP CB C N N 298 TRP CG C Y N 299 TRP CD1 C Y N 300 TRP CD2 C Y N 301 TRP NE1 N Y N 302 TRP CE2 C Y N 303 TRP CE3 C Y N 304 TRP CZ2 C Y N 305 TRP CZ3 C Y N 306 TRP CH2 C Y N 307 TRP OXT O N N 308 TRP H H N N 309 TRP H2 H N N 310 TRP HA H N N 311 TRP HB2 H N N 312 TRP HB3 H N N 313 TRP HD1 H N N 314 TRP HE1 H N N 315 TRP HE3 H N N 316 TRP HZ2 H N N 317 TRP HZ3 H N N 318 TRP HH2 H N N 319 TRP HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 GLN N CA sing N N 57 GLN N H sing N N 58 GLN N H2 sing N N 59 GLN CA C sing N N 60 GLN CA CB sing N N 61 GLN CA HA sing N N 62 GLN C O doub N N 63 GLN C OXT sing N N 64 GLN CB CG sing N N 65 GLN CB HB2 sing N N 66 GLN CB HB3 sing N N 67 GLN CG CD sing N N 68 GLN CG HG2 sing N N 69 GLN CG HG3 sing N N 70 GLN CD OE1 doub N N 71 GLN CD NE2 sing N N 72 GLN NE2 HE21 sing N N 73 GLN NE2 HE22 sing N N 74 GLN OXT HXT sing N N 75 GLU N CA sing N N 76 GLU N H sing N N 77 GLU N H2 sing N N 78 GLU CA C sing N N 79 GLU CA CB sing N N 80 GLU CA HA sing N N 81 GLU C O doub N N 82 GLU C OXT sing N N 83 GLU CB CG sing N N 84 GLU CB HB2 sing N N 85 GLU CB HB3 sing N N 86 GLU CG CD sing N N 87 GLU CG HG2 sing N N 88 GLU CG HG3 sing N N 89 GLU CD OE1 doub N N 90 GLU CD OE2 sing N N 91 GLU OE2 HE2 sing N N 92 GLU OXT HXT sing N N 93 GLY N CA sing N N 94 GLY N H sing N N 95 GLY N H2 sing N N 96 GLY CA C sing N N 97 GLY CA HA2 sing N N 98 GLY CA HA3 sing N N 99 GLY C O doub N N 100 GLY C OXT sing N N 101 GLY OXT HXT sing N N 102 HIS N CA sing N N 103 HIS N H sing N N 104 HIS N H2 sing N N 105 HIS CA C sing N N 106 HIS CA CB sing N N 107 HIS CA HA sing N N 108 HIS C O doub N N 109 HIS C OXT sing N N 110 HIS CB CG sing N N 111 HIS CB HB2 sing N N 112 HIS CB HB3 sing N N 113 HIS CG ND1 sing Y N 114 HIS CG CD2 doub Y N 115 HIS ND1 CE1 doub Y N 116 HIS ND1 HD1 sing N N 117 HIS CD2 NE2 sing Y N 118 HIS CD2 HD2 sing N N 119 HIS CE1 NE2 sing Y N 120 HIS CE1 HE1 sing N N 121 HIS NE2 HE2 sing N N 122 HIS OXT HXT sing N N 123 HOH O H1 sing N N 124 HOH O H2 sing N N 125 ILE N CA sing N N 126 ILE N H sing N N 127 ILE N H2 sing N N 128 ILE CA C sing N N 129 ILE CA CB sing N N 130 ILE CA HA sing N N 131 ILE C O doub N N 132 ILE C OXT sing N N 133 ILE CB CG1 sing N N 134 ILE CB CG2 sing N N 135 ILE CB HB sing N N 136 ILE CG1 CD1 sing N N 137 ILE CG1 HG12 sing N N 138 ILE CG1 HG13 sing N N 139 ILE CG2 HG21 sing N N 140 ILE CG2 HG22 sing N N 141 ILE CG2 HG23 sing N N 142 ILE CD1 HD11 sing N N 143 ILE CD1 HD12 sing N N 144 ILE CD1 HD13 sing N N 145 ILE OXT HXT sing N N 146 LEU N CA sing N N 147 LEU N H sing N N 148 LEU N H2 sing N N 149 LEU CA C sing N N 150 LEU CA CB sing N N 151 LEU CA HA sing N N 152 LEU C O doub N N 153 LEU C OXT sing N N 154 LEU CB CG sing N N 155 LEU CB HB2 sing N N 156 LEU CB HB3 sing N N 157 LEU CG CD1 sing N N 158 LEU CG CD2 sing N N 159 LEU CG HG sing N N 160 LEU CD1 HD11 sing N N 161 LEU CD1 HD12 sing N N 162 LEU CD1 HD13 sing N N 163 LEU CD2 HD21 sing N N 164 LEU CD2 HD22 sing N N 165 LEU CD2 HD23 sing N N 166 LEU OXT HXT sing N N 167 LYS N CA sing N N 168 LYS N H sing N N 169 LYS N H2 sing N N 170 LYS CA C sing N N 171 LYS CA CB sing N N 172 LYS CA HA sing N N 173 LYS C O doub N N 174 LYS C OXT sing N N 175 LYS CB CG sing N N 176 LYS CB HB2 sing N N 177 LYS CB HB3 sing N N 178 LYS CG CD sing N N 179 LYS CG HG2 sing N N 180 LYS CG HG3 sing N N 181 LYS CD CE sing N N 182 LYS CD HD2 sing N N 183 LYS CD HD3 sing N N 184 LYS CE NZ sing N N 185 LYS CE HE2 sing N N 186 LYS CE HE3 sing N N 187 LYS NZ HZ1 sing N N 188 LYS NZ HZ2 sing N N 189 LYS NZ HZ3 sing N N 190 LYS OXT HXT sing N N 191 MET N CA sing N N 192 MET N H sing N N 193 MET N H2 sing N N 194 MET CA C sing N N 195 MET CA CB sing N N 196 MET CA HA sing N N 197 MET C O doub N N 198 MET C OXT sing N N 199 MET CB CG sing N N 200 MET CB HB2 sing N N 201 MET CB HB3 sing N N 202 MET CG SD sing N N 203 MET CG HG2 sing N N 204 MET CG HG3 sing N N 205 MET SD CE sing N N 206 MET CE HE1 sing N N 207 MET CE HE2 sing N N 208 MET CE HE3 sing N N 209 MET OXT HXT sing N N 210 PHE N CA sing N N 211 PHE N H sing N N 212 PHE N H2 sing N N 213 PHE CA C sing N N 214 PHE CA CB sing N N 215 PHE CA HA sing N N 216 PHE C O doub N N 217 PHE C OXT sing N N 218 PHE CB CG sing N N 219 PHE CB HB2 sing N N 220 PHE CB HB3 sing N N 221 PHE CG CD1 doub Y N 222 PHE CG CD2 sing Y N 223 PHE CD1 CE1 sing Y N 224 PHE CD1 HD1 sing N N 225 PHE CD2 CE2 doub Y N 226 PHE CD2 HD2 sing N N 227 PHE CE1 CZ doub Y N 228 PHE CE1 HE1 sing N N 229 PHE CE2 CZ sing Y N 230 PHE CE2 HE2 sing N N 231 PHE CZ HZ sing N N 232 PHE OXT HXT sing N N 233 PRO N CA sing N N 234 PRO N CD sing N N 235 PRO N H sing N N 236 PRO CA C sing N N 237 PRO CA CB sing N N 238 PRO CA HA sing N N 239 PRO C O doub N N 240 PRO C OXT sing N N 241 PRO CB CG sing N N 242 PRO CB HB2 sing N N 243 PRO CB HB3 sing N N 244 PRO CG CD sing N N 245 PRO CG HG2 sing N N 246 PRO CG HG3 sing N N 247 PRO CD HD2 sing N N 248 PRO CD HD3 sing N N 249 PRO OXT HXT sing N N 250 SER N CA sing N N 251 SER N H sing N N 252 SER N H2 sing N N 253 SER CA C sing N N 254 SER CA CB sing N N 255 SER CA HA sing N N 256 SER C O doub N N 257 SER C OXT sing N N 258 SER CB OG sing N N 259 SER CB HB2 sing N N 260 SER CB HB3 sing N N 261 SER OG HG sing N N 262 SER OXT HXT sing N N 263 THR N CA sing N N 264 THR N H sing N N 265 THR N H2 sing N N 266 THR CA C sing N N 267 THR CA CB sing N N 268 THR CA HA sing N N 269 THR C O doub N N 270 THR C OXT sing N N 271 THR CB OG1 sing N N 272 THR CB CG2 sing N N 273 THR CB HB sing N N 274 THR OG1 HG1 sing N N 275 THR CG2 HG21 sing N N 276 THR CG2 HG22 sing N N 277 THR CG2 HG23 sing N N 278 THR OXT HXT sing N N 279 TRP N CA sing N N 280 TRP N H sing N N 281 TRP N H2 sing N N 282 TRP CA C sing N N 283 TRP CA CB sing N N 284 TRP CA HA sing N N 285 TRP C O doub N N 286 TRP C OXT sing N N 287 TRP CB CG sing N N 288 TRP CB HB2 sing N N 289 TRP CB HB3 sing N N 290 TRP CG CD1 doub Y N 291 TRP CG CD2 sing Y N 292 TRP CD1 NE1 sing Y N 293 TRP CD1 HD1 sing N N 294 TRP CD2 CE2 doub Y N 295 TRP CD2 CE3 sing Y N 296 TRP NE1 CE2 sing Y N 297 TRP NE1 HE1 sing N N 298 TRP CE2 CZ2 sing Y N 299 TRP CE3 CZ3 doub Y N 300 TRP CE3 HE3 sing N N 301 TRP CZ2 CH2 doub Y N 302 TRP CZ2 HZ2 sing N N 303 TRP CZ3 CH2 sing Y N 304 TRP CZ3 HZ3 sing N N 305 TRP CH2 HH2 sing N N 306 TRP OXT HXT sing N N 307 TYR N CA sing N N 308 TYR N H sing N N 309 TYR N H2 sing N N 310 TYR CA C sing N N 311 TYR CA CB sing N N 312 TYR CA HA sing N N 313 TYR C O doub N N 314 TYR C OXT sing N N 315 TYR CB CG sing N N 316 TYR CB HB2 sing N N 317 TYR CB HB3 sing N N 318 TYR CG CD1 doub Y N 319 TYR CG CD2 sing Y N 320 TYR CD1 CE1 sing Y N 321 TYR CD1 HD1 sing N N 322 TYR CD2 CE2 doub Y N 323 TYR CD2 HD2 sing N N 324 TYR CE1 CZ doub Y N 325 TYR CE1 HE1 sing N N 326 TYR CE2 CZ sing Y N 327 TYR CE2 HE2 sing N N 328 TYR CZ OH sing N N 329 TYR OH HH sing N N 330 TYR OXT HXT sing N N 331 VAL N CA sing N N 332 VAL N H sing N N 333 VAL N H2 sing N N 334 VAL CA C sing N N 335 VAL CA CB sing N N 336 VAL CA HA sing N N 337 VAL C O doub N N 338 VAL C OXT sing N N 339 VAL CB CG1 sing N N 340 VAL CB CG2 sing N N 341 VAL CB HB sing N N 342 VAL CG1 HG11 sing N N 343 VAL CG1 HG12 sing N N 344 VAL CG1 HG13 sing N N 345 VAL CG2 HG21 sing N N 346 VAL CG2 HG22 sing N N 347 VAL CG2 HG23 sing N N 348 VAL OXT HXT sing N N 349 # _pdbx_audit_support.funding_organization 'Japan Agency for Medical Research and Development (AMED)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number JP23ama121001 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4oo5 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8YS1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.032637 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006747 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013459 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018928 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0555 # loop_ #