data_8YS7 # _entry.id 8YS7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YS7 pdb_00008ys7 10.2210/pdb8ys7/pdb WWPDB D_1300046244 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-04-09 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YS7 _pdbx_database_status.recvd_initial_deposition_date 2024-03-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email mhho@nchu.edu.tw _pdbx_contact_author.name_first Ming-Hon _pdbx_contact_author.name_last Hou _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4170-1527 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lee, Y.Y.' 1 ? 'Hou, M.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of actinomycin D and Echinomycin-d(ACGGGCT/AGCCCCGT) complex' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, Y.Y.' 1 ? primary 'Hou, M.H.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*GP*CP*CP*CP*CP*GP*T)-3') ; 2387.581 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*CP*GP*GP*GP*CP*T)-3') ; 2138.423 2 ? ? ? ? 3 polymer nat Echinomycin 809.008 2 ? ? ? ? 4 polymer nat 'actinomycin D' 1291.446 2 ? ? ? ? 5 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 4 ? ? ? ? 6 water nat water 18.015 5 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DC)(DC)(DC)(DG)(DT)' AGCCCCGT B,K ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DG)(DG)(DC)(DT)' ACGGGCT C,L ? 3 'polypeptide(L)' no yes '(DSN)A(N2C)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV E,A ? 4 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV I,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 2-CARBOXYQUINOXALINE QUI 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DC n 1 4 DC n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DT n 3 1 DSN n 3 2 ALA n 3 3 N2C n 3 4 MVA n 3 5 DSN n 3 6 ALA n 3 7 NCY n 3 8 MVA n 4 1 THR n 4 2 DVA n 4 3 PRO n 4 4 SAR n 4 5 MVA n 4 6 PXZ n 4 7 THR n 4 8 DVA n 4 9 PRO n 4 10 SAR n 4 11 MVA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 3 1 sample 1 8 ? Streptomyces 1883 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 1 11 ? Streptomyces 1883 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 8 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 N2C 'L-peptide linking' . N,S-DIMETHYLCYSTEINE ? 'C5 H11 N O2 S' 149.211 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA B . n A 1 2 DG 2 2 2 DG DG B . n A 1 3 DC 3 3 3 DC DC B . n A 1 4 DC 4 4 4 DC DC B . n A 1 5 DC 5 5 5 DC DC B . n A 1 6 DC 6 6 6 DC DC B . n A 1 7 DG 7 7 7 DG DG B . n A 1 8 DT 8 8 8 DT DT B . n B 2 1 DA 1 1 1 DA DA C . n B 2 2 DC 2 2 2 DC DC C . n B 2 3 DG 3 3 3 DG DG C . n B 2 4 DG 4 4 4 DG DG C . n B 2 5 DG 5 5 5 DG DG C . n B 2 6 DC 6 6 6 DC DC C . n B 2 7 DT 7 7 7 DT DT C . n C 1 1 DA 1 1 1 DA DA K . n C 1 2 DG 2 2 2 DG DG K . n C 1 3 DC 3 3 3 DC DC K . n C 1 4 DC 4 4 4 DC DC K . n C 1 5 DC 5 5 5 DC DC K . n C 1 6 DC 6 6 6 DC DC K . n C 1 7 DG 7 7 7 DG DG K . n C 1 8 DT 8 8 8 DT DT K . n D 2 1 DA 1 1 1 DA DA L . n D 2 2 DC 2 2 2 DC DC L . n D 2 3 DG 3 3 3 DG DG L . n D 2 4 DG 4 4 4 DG DG L . n D 2 5 DG 5 5 5 DG DG L . n D 2 6 DC 6 6 6 DC DC L . n D 2 7 DT 7 7 7 DT DT L . n E 3 1 DSN 1 1 1 DSN DSN E . n E 3 2 ALA 2 2 2 ALA ALA E . n E 3 3 N2C 3 3 3 N2C N2C E . n E 3 4 MVA 4 4 4 MVA MVA E . n E 3 5 DSN 5 5 5 DSN DSN E . n E 3 6 ALA 6 6 6 ALA ALA E . n E 3 7 NCY 7 7 7 NCY NCY E . n E 3 8 MVA 8 8 8 MVA MVA E . n F 4 1 THR 1 1 1 THR THR I . n F 4 2 DVA 2 2 2 DVA DVA I . n F 4 3 PRO 3 3 3 PRO PRO I . n F 4 4 SAR 4 4 4 SAR SAR I . n F 4 5 MVA 5 5 5 MVA MVA I . n F 4 6 PXZ 6 6 6 PXZ PXF I . n F 4 7 THR 7 7 7 THR THR I . n F 4 8 DVA 8 8 8 DVA DVA I . n F 4 9 PRO 9 9 9 PRO PRO I . n F 4 10 SAR 10 10 10 SAR SAR I . n F 4 11 MVA 11 11 11 MVA MVA I . n G 4 1 THR 1 1 1 THR THR D . n G 4 2 DVA 2 2 2 DVA DVA D . n G 4 3 PRO 3 3 3 PRO PRO D . n G 4 4 SAR 4 4 4 SAR SAR D . n G 4 5 MVA 5 5 5 MVA MVA D . n G 4 6 PXZ 6 6 6 PXZ PXF D . n G 4 7 THR 7 7 7 THR THR D . n G 4 8 DVA 8 8 8 DVA DVA D . n G 4 9 PRO 9 9 9 PRO PRO D . n G 4 10 SAR 10 10 10 SAR SAR D . n G 4 11 MVA 11 11 11 MVA MVA D . n H 3 1 DSN 1 1 1 DSN DSN A . n H 3 2 ALA 2 2 2 ALA ALA A . n H 3 3 N2C 3 3 3 N2C N2C A . n H 3 4 MVA 4 4 4 MVA MVA A . n H 3 5 DSN 5 5 5 DSN DSN A . n H 3 6 ALA 6 6 6 ALA ALA A . n H 3 7 NCY 7 7 7 NCY NCY A . n H 3 8 MVA 8 8 8 MVA MVA A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 SAR ? ? SAR ? ? 'SUBJECT OF INVESTIGATION' ? 2 QUI ? ? QUI ? ? 'SUBJECT OF INVESTIGATION' ? 3 PXZ ? ? PXZ ? ? 'SUBJECT OF INVESTIGATION' ? 4 NCY ? ? NCY ? ? 'SUBJECT OF INVESTIGATION' ? 5 N2C ? ? N2C ? ? 'SUBJECT OF INVESTIGATION' ? 6 MVA ? ? MVA ? ? 'SUBJECT OF INVESTIGATION' ? 7 DVA ? ? DVA ? ? 'SUBJECT OF INVESTIGATION' ? 8 DSN ? ? DSN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 QUI 1 101 101 QUI QUI E . J 5 QUI 1 102 102 QUI QUI E . K 5 QUI 1 101 101 QUI QUI A . L 5 QUI 1 102 102 QUI QUI A . M 6 HOH 1 101 8 HOH HOH C . M 6 HOH 2 102 12 HOH HOH C . M 6 HOH 3 103 10 HOH HOH C . N 6 HOH 1 101 13 HOH HOH K . O 6 HOH 1 101 11 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8YS7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 132.661 _cell.length_a_esd ? _cell.length_b 132.661 _cell.length_b_esd ? _cell.length_c 50.052 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 36 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YS7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 2000, potassium chloride, magnesium chloride hexahydrate, sodium chloride, Bis-Tris' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-06-01 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99984 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE TPS 05A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99984 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'TPS 05A' _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8YS7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.2 _reflns.d_resolution_low 30.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2721 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.120 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 3.25 3.37 ? ? ? ? ? ? 246 ? ? ? ? ? ? ? ? ? ? ? 8.2 1.038 ? ? 0.414 0.134 ? 1 1 0.979 0.995 ? 93.5 ? 0.390 ? ? ? ? ? ? ? ? ? 3.37 3.50 ? ? ? ? ? ? 274 ? ? ? ? ? ? ? ? ? ? ? 9.0 0.995 ? ? 0.294 0.093 ? 2 1 0.993 0.998 ? 99.3 ? 0.278 ? ? ? ? ? ? ? ? ? 3.50 3.66 ? ? ? ? ? ? 272 ? ? ? ? ? ? ? ? ? ? ? 10.0 1.071 ? ? 0.333 0.101 ? 3 1 0.981 0.995 ? 99.3 ? 0.317 ? ? ? ? ? ? ? ? ? 3.66 3.85 ? ? ? ? ? ? 274 ? ? ? ? ? ? ? ? ? ? ? 10.4 1.095 ? ? 0.434 0.132 ? 4 1 0.970 0.992 ? 100.0 ? 0.413 ? ? ? ? ? ? ? ? ? 3.85 4.09 ? ? ? ? ? ? 264 ? ? ? ? ? ? ? ? ? ? ? 10.8 1.077 ? ? 0.391 0.118 ? 5 1 0.965 0.991 ? 100.0 ? 0.373 ? ? ? ? ? ? ? ? ? 4.09 4.41 ? ? ? ? ? ? 279 ? ? ? ? ? ? ? ? ? ? ? 10.5 1.068 ? ? 0.251 0.077 ? 6 1 0.988 0.997 ? 100.0 ? 0.238 ? ? ? ? ? ? ? ? ? 4.41 4.85 ? ? ? ? ? ? 274 ? ? ? ? ? ? ? ? ? ? ? 10.2 1.070 ? ? 0.165 0.051 ? 7 1 0.992 0.998 ? 100.0 ? 0.157 ? ? ? ? ? ? ? ? ? 4.85 5.55 ? ? ? ? ? ? 277 ? ? ? ? ? ? ? ? ? ? ? 9.7 1.048 ? ? 0.124 0.040 ? 8 1 0.994 0.999 ? 99.6 ? 0.118 ? ? ? ? ? ? ? ? ? 5.55 6.98 ? ? ? ? ? ? 279 ? ? ? ? ? ? ? ? ? ? ? 9.3 1.015 ? ? 0.092 0.030 ? 9 1 0.997 0.999 ? 99.3 ? 0.086 ? ? ? ? ? ? ? ? ? 6.98 30.00 ? ? ? ? ? ? 282 ? ? ? ? ? ? ? ? ? ? ? 8.5 1.046 ? ? 0.071 0.025 ? 10 1 0.997 0.999 ? 97.2 ? 0.066 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YS7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.24 _refine.ls_d_res_low 23.32 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2687 _refine.ls_number_reflns_R_free 269 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.39 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2787 _refine.ls_R_factor_R_free 0.2921 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2771 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.12 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 286 _refine_hist.pdbx_number_atoms_nucleic_acid 612 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 951 _refine_hist.d_res_high 3.24 _refine_hist.d_res_low 23.32 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.030 ? 1020 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.592 ? 1512 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 38.779 ? 336 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.171 ? 160 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.020 ? 84 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.25 3.37 . . 129 1167 96.00 . . . . 0.2945 . . . . . . . . . . . 0.3157 'X-RAY DIFFRACTION' 4.08 23.32 . . 140 1251 99.00 . . . . 0.2710 . . . . . . . . . . . 0.2840 # _struct.entry_id 8YS7 _struct.title 'Crystal structure of actinomycin D and Echinomycin-d(ACGGGCT/AGCCCCGT) complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YS7 _struct_keywords.text 'Bulge DNA, Actinomycin D, Echinomycin, DNA, DNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 6 ? N N N 6 ? O N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8YS7 8YS7 ? 1 ? 1 2 PDB 8YS7 8YS7 ? 2 ? 1 3 NOR 8YS7 NOR01126 ? 3 ? 1 4 NOR 8YS7 NOR00228 ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8YS7 B 1 ? 8 ? 8YS7 1 ? 8 ? 1 8 2 2 8YS7 C 1 ? 7 ? 8YS7 1 ? 7 ? 1 7 3 1 8YS7 K 1 ? 8 ? 8YS7 1 ? 8 ? 1 8 4 2 8YS7 L 1 ? 7 ? 8YS7 1 ? 7 ? 1 7 5 3 8YS7 E 1 ? 8 ? 8YS7 1 ? 8 ? 1 8 6 4 8YS7 I 1 ? 11 ? 8YS7 1 ? 11 ? 1 11 7 4 8YS7 D 1 ? 11 ? 8YS7 1 ? 11 ? 1 11 8 3 8YS7 A 1 ? 8 ? 8YS7 1 ? 8 ? 1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,F,H,K,L,M 2 1 C,D,E,G,I,J,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? E N2C 3 SG ? ? ? 1_555 E NCY 7 SG ? ? E N2C 3 E NCY 7 1_555 ? ? ? ? ? ? ? 2.913 ? ? disulf2 disulf ? ? H N2C 3 SG ? ? ? 1_555 H NCY 7 SG ? ? A N2C 3 A NCY 7 1_555 ? ? ? ? ? ? ? 2.407 ? ? covale1 covale both ? E DSN 1 C ? ? ? 1_555 E ALA 2 N ? ? E DSN 1 E ALA 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale one ? E DSN 1 OG ? ? ? 1_555 E MVA 8 C ? ? E DSN 1 E MVA 8 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale3 covale both ? E DSN 1 N ? ? ? 1_555 I QUI . C ? ? E DSN 1 E QUI 101 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale4 covale both ? E ALA 2 C ? ? ? 1_555 E N2C 3 N ? ? E ALA 2 E N2C 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? E N2C 3 C ? ? ? 1_555 E MVA 4 N ? ? E N2C 3 E MVA 4 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale6 covale both ? E N2C 3 CB ? ? ? 1_555 E NCY 7 SG ? ? E N2C 3 E NCY 7 1_555 ? ? ? ? ? ? ? 1.770 ? ? covale7 covale one ? E MVA 4 C ? ? ? 1_555 E DSN 5 OG ? ? E MVA 4 E DSN 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale8 covale both ? E DSN 5 C ? ? ? 1_555 E ALA 6 N ? ? E DSN 5 E ALA 6 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale9 covale both ? E DSN 5 N ? ? ? 1_555 J QUI . C ? ? E DSN 5 E QUI 102 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale10 covale both ? E ALA 6 C ? ? ? 1_555 E NCY 7 N ? ? E ALA 6 E NCY 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? E NCY 7 C ? ? ? 1_555 E MVA 8 N ? ? E NCY 7 E MVA 8 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? F THR 1 C ? ? ? 1_555 F DVA 2 N ? ? I THR 1 I DVA 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale13 covale one ? F THR 1 OG1 ? ? ? 1_555 F MVA 5 C ? ? I THR 1 I MVA 5 1_555 ? ? ? ? ? ? ? 1.465 ? ? covale14 covale both ? F THR 1 N ? ? ? 1_555 F PXZ 6 C0 ? ? I THR 1 I PXZ 6 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale15 covale both ? F DVA 2 C ? ? ? 1_555 F PRO 3 N ? ? I DVA 2 I PRO 3 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale16 covale both ? F PRO 3 C ? ? ? 1_555 F SAR 4 N ? ? I PRO 3 I SAR 4 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale17 covale both ? F SAR 4 C ? ? ? 1_555 F MVA 5 N ? ? I SAR 4 I MVA 5 1_555 ? ? ? ? ? ? ? 1.262 ? ? covale18 covale both ? F PXZ 6 "C0'" ? ? ? 1_555 F THR 7 N ? ? I PXZ 6 I THR 7 1_555 ? ? ? ? ? ? ? 1.215 ? ? covale19 covale both ? F THR 7 C ? ? ? 1_555 F DVA 8 N ? ? I THR 7 I DVA 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale20 covale both ? F DVA 8 C ? ? ? 1_555 F PRO 9 N ? ? I DVA 8 I PRO 9 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale21 covale both ? F PRO 9 C ? ? ? 1_555 F SAR 10 N ? ? I PRO 9 I SAR 10 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale22 covale both ? F SAR 10 C ? ? ? 1_555 F MVA 11 N ? ? I SAR 10 I MVA 11 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale23 covale both ? G THR 1 C ? ? ? 1_555 G DVA 2 N ? ? D THR 1 D DVA 2 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale24 covale one ? G THR 1 OG1 ? ? ? 1_555 G MVA 5 C ? ? D THR 1 D MVA 5 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale25 covale both ? G THR 1 N ? ? ? 1_555 G PXZ 6 C0 ? ? D THR 1 D PXZ 6 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale26 covale both ? G DVA 2 C ? ? ? 1_555 G PRO 3 N ? ? D DVA 2 D PRO 3 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale27 covale both ? G PRO 3 C ? ? ? 1_555 G SAR 4 N ? ? D PRO 3 D SAR 4 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale28 covale both ? G SAR 4 C ? ? ? 1_555 G MVA 5 N ? ? D SAR 4 D MVA 5 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale29 covale both ? G PXZ 6 "C0'" ? ? ? 1_555 G THR 7 N ? ? D PXZ 6 D THR 7 1_555 ? ? ? ? ? ? ? 1.381 ? ? covale30 covale both ? G THR 7 C ? ? ? 1_555 G DVA 8 N ? ? D THR 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.367 ? ? covale31 covale one ? G THR 7 OG1 ? ? ? 1_555 G MVA 11 C ? ? D THR 7 D MVA 11 1_555 ? ? ? ? ? ? ? 1.288 ? ? covale32 covale both ? G DVA 8 C ? ? ? 1_555 G PRO 9 N ? ? D DVA 8 D PRO 9 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale33 covale both ? G PRO 9 C ? ? ? 1_555 G SAR 10 N ? ? D PRO 9 D SAR 10 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale34 covale both ? G SAR 10 C ? ? ? 1_555 G MVA 11 N ? ? D SAR 10 D MVA 11 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale35 covale both ? H DSN 1 C ? ? ? 1_555 H ALA 2 N ? ? A DSN 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale36 covale one ? H DSN 1 OG ? ? ? 1_555 H MVA 8 C ? ? A DSN 1 A MVA 8 1_555 ? ? ? ? ? ? ? 1.457 ? ? covale37 covale both ? H DSN 1 N ? ? ? 1_555 K QUI . C ? ? A DSN 1 A QUI 101 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale38 covale both ? H ALA 2 C ? ? ? 1_555 H N2C 3 N ? ? A ALA 2 A N2C 3 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale39 covale both ? H N2C 3 C ? ? ? 1_555 H MVA 4 N ? ? A N2C 3 A MVA 4 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale40 covale both ? H N2C 3 CB ? ? ? 1_555 H NCY 7 SG ? ? A N2C 3 A NCY 7 1_555 ? ? ? ? ? ? ? 1.818 ? ? covale41 covale one ? H MVA 4 C ? ? ? 1_555 H DSN 5 OG ? ? A MVA 4 A DSN 5 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale42 covale both ? H DSN 5 C ? ? ? 1_555 H ALA 6 N ? ? A DSN 5 A ALA 6 1_555 ? ? ? ? ? ? ? 1.245 ? ? covale43 covale both ? H DSN 5 N ? ? ? 1_555 L QUI . C ? ? A DSN 5 A QUI 102 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale44 covale both ? H ALA 6 C ? ? ? 1_555 H NCY 7 N ? ? A ALA 6 A NCY 7 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale45 covale both ? H NCY 7 C ? ? ? 1_555 H MVA 8 N ? ? A NCY 7 A MVA 8 1_555 ? ? ? ? ? ? ? 1.324 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 1 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 1 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 2 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 2 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 2 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 4 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 4 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 4 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 5 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 5 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 5 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 6 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 6 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 6 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 7 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 7 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 7 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 8 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 8 C DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 7 N3 ? ? K DA 1 L DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 7 O4 ? ? K DA 1 L DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 6 N3 ? ? K DG 2 L DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 6 O2 ? ? K DG 2 L DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 6 N4 ? ? K DG 2 L DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 5 N1 ? ? K DC 4 L DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 5 O6 ? ? K DC 4 L DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 5 N2 ? ? K DC 4 L DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 4 N1 ? ? K DC 5 L DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 4 O6 ? ? K DC 5 L DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 4 N2 ? ? K DC 5 L DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 3 N1 ? ? K DC 6 L DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 3 O6 ? ? K DC 6 L DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 3 N2 ? ? K DC 6 L DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 2 N3 ? ? K DG 7 L DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 2 O2 ? ? K DG 7 L DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 2 N4 ? ? K DG 7 L DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 1 N6 ? ? K DT 8 L DA 1 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 N2C E 3 ? . . . . N2C E 3 ? 1_555 . . . . . . . CYS 1 N2C Methylation 'Named protein modification' 2 MVA E 4 ? . . . . MVA E 4 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 NCY E 7 ? . . . . NCY E 7 ? 1_555 . . . . . . . CYS 1 NCY Methylation 'Named protein modification' 4 MVA E 8 ? . . . . MVA E 8 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 SAR F 4 ? . . . . SAR I 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 6 MVA F 5 ? . . . . MVA I 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 7 SAR F 10 ? . . . . SAR I 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 8 MVA F 11 ? . . . . MVA I 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 9 SAR G 4 ? . . . . SAR D 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 10 MVA G 5 ? . . . . MVA D 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 11 SAR G 10 ? . . . . SAR D 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 12 MVA G 11 ? . . . . MVA D 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 13 N2C H 3 ? . . . . N2C A 3 ? 1_555 . . . . . . . CYS 1 N2C Methylation 'Named protein modification' 14 MVA H 4 ? . . . . MVA A 4 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 15 NCY H 7 ? . . . . NCY A 7 ? 1_555 . . . . . . . CYS 1 NCY Methylation 'Named protein modification' 16 MVA H 8 ? . . . . MVA A 8 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 17 PXZ F 6 ? . . . . PXZ I 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 18 PXZ G 6 ? . . . . PXZ D 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 19 QUI I . ? DSN E 1 ? QUI E 101 ? 1_555 DSN E 1 ? 1_555 C N DSN 1 QUI None 'Covalent chemical modification' 20 QUI J . ? DSN E 5 ? QUI E 102 ? 1_555 DSN E 5 ? 1_555 C N DSN 1 QUI None 'Covalent chemical modification' 21 QUI K . ? DSN H 1 ? QUI A 101 ? 1_555 DSN A 1 ? 1_555 C N DSN 1 QUI None 'Covalent chemical modification' 22 QUI L . ? DSN H 5 ? QUI A 102 ? 1_555 DSN A 5 ? 1_555 C N DSN 1 QUI None 'Covalent chemical modification' 23 N2C E 3 ? NCY E 7 ? N2C E 3 ? 1_555 NCY E 7 ? 1_555 SG SG . . . None 'Disulfide bridge' 24 N2C H 3 ? NCY H 7 ? N2C A 3 ? 1_555 NCY A 7 ? 1_555 SG SG . . . None 'Disulfide bridge' 25 DSN E 1 ? MVA E 8 ? DSN E 1 ? 1_555 MVA E 8 ? 1_555 OG C . . . None 'Non-standard linkage' 26 N2C E 3 ? NCY E 7 ? N2C E 3 ? 1_555 NCY E 7 ? 1_555 CB SG . . . None 'Non-standard linkage' 27 MVA E 4 ? DSN E 5 ? MVA E 4 ? 1_555 DSN E 5 ? 1_555 C OG . . . None 'Non-standard linkage' 28 THR F 1 ? MVA F 5 ? THR I 1 ? 1_555 MVA I 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 29 THR F 1 ? PXZ F 6 ? THR I 1 ? 1_555 PXZ I 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 30 THR G 1 ? MVA G 5 ? THR D 1 ? 1_555 MVA D 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 31 THR G 1 ? PXZ G 6 ? THR D 1 ? 1_555 PXZ D 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 32 THR G 7 ? MVA G 11 ? THR D 7 ? 1_555 MVA D 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' 33 DSN H 1 ? MVA H 8 ? DSN A 1 ? 1_555 MVA A 8 ? 1_555 OG C . . . None 'Non-standard linkage' 34 N2C H 3 ? NCY H 7 ? N2C A 3 ? 1_555 NCY A 7 ? 1_555 CB SG . . . None 'Non-standard linkage' 35 MVA H 4 ? DSN H 5 ? MVA A 4 ? 1_555 DSN A 5 ? 1_555 C OG . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 F . ? DVA 2 I PRO 3 F ? PRO 3 I 1 19.05 2 PRO 3 F . ? PRO 3 I SAR 4 F ? SAR 4 I 1 -15.86 3 DVA 8 F . ? DVA 8 I PRO 9 F ? PRO 9 I 1 8.31 4 PRO 9 F . ? PRO 9 I SAR 10 F ? SAR 10 I 1 0.31 5 DVA 2 G . ? DVA 2 D PRO 3 G ? PRO 3 D 1 19.76 6 PRO 3 G . ? PRO 3 D SAR 4 G ? SAR 4 D 1 -16.26 7 DVA 8 G . ? DVA 8 D PRO 9 G ? PRO 9 D 1 13.59 8 PRO 9 G . ? PRO 9 D SAR 10 G ? SAR 10 D 1 -18.72 # _pdbx_entry_details.entry_id 8YS7 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ;THE ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, ECHINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) QUI. ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 I THR 7 ? ? O I MVA 11 ? ? 1.46 2 1 "O1'" I PXZ 6 ? ? N I THR 7 ? ? 1.72 3 1 OG1 I THR 7 ? ? C I MVA 11 ? ? 1.76 4 1 OG1 I THR 1 ? ? O I MVA 5 ? ? 1.93 5 1 CB D THR 1 ? ? C D MVA 5 ? ? 2.05 6 1 OG1 D THR 7 ? ? O D MVA 11 ? ? 2.11 7 1 CA E DSN 1 ? ? C E QUI 101 ? ? 2.11 8 1 CA E DSN 5 ? ? C E QUI 102 ? ? 2.16 9 1 CA A DSN 5 ? ? C A QUI 102 ? ? 2.17 10 1 OG E DSN 1 ? ? O E MVA 8 ? ? 2.19 # loop_ _pdbx_molecule_features.prd_id _pdbx_molecule_features.name _pdbx_molecule_features.type _pdbx_molecule_features.class _pdbx_molecule_features.details PRD_000001 'Actinomycin D' Polypeptide Antibiotic ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; PRD_000491 Echinomycin 'Cyclic depsipeptide' Antibiotic ;ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000491 E 1 PRD_000491 I 1 PRD_000491 J 2 PRD_000001 G # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 12.2677 66.7847 26.1148 1.3611 ? -0.1879 ? 0.0969 ? 0.0141 ? 0.6258 ? 2.8524 ? 1.0668 ? 1.2964 ? -1.4601 ? 6.8116 ? -0.1134 ? 2.7614 ? 0.9714 ? -0.9763 ? -0.5966 ? 2.6013 ? -1.2781 ? -0.5466 ? -0.0704 ? 3.0250 ? 0.0451 ? 2 'X-RAY DIFFRACTION' ? refined 10.9146 66.8809 16.8426 1.7422 ? -0.0062 ? 0.1298 ? 0.7981 ? 0.2208 ? 1.4473 ? 1.1812 ? 0.4850 ? 0.1526 ? 6.0777 ? -0.4931 ? 3.6579 ? 0.9774 ? 0.6733 ? 0.9810 ? -0.4731 ? -0.7118 ? 0.9282 ? -0.9373 ? -0.1296 ? 0.0003 ? 3 'X-RAY DIFFRACTION' ? refined 9.5195 32.3655 20.9740 1.0586 ? -0.2890 ? -0.2198 ? 0.7980 ? 0.0826 ? 1.2632 ? 1.1325 ? -1.2777 ? -0.3221 ? 5.4078 ? -0.5588 ? 4.4986 ? -0.4279 ? 0.7104 ? -0.1617 ? 0.2315 ? -0.2954 ? -1.0964 ? 0.7016 ? -0.4753 ? 0.5451 ? 4 'X-RAY DIFFRACTION' ? refined 1.2253 35.9604 19.9539 1.1749 ? -0.4558 ? -0.0142 ? 1.1868 ? -0.1807 ? 1.1830 ? 0.4180 ? -1.0668 ? -1.5344 ? 5.4052 ? -0.2840 ? 3.4672 ? 0.0186 ? 0.7807 ? -0.0158 ? 0.6546 ? -0.7586 ? 1.4439 ? 1.3079 ? -1.6943 ? 0.3844 ? 5 'X-RAY DIFFRACTION' ? refined 1.0978 27.5443 22.9282 -0.5969 ? -4.1812 ? -0.0777 ? -3.5940 ? 0.6340 ? 1.8691 ? 0.4011 ? -0.8814 ? -0.4413 ? 4.4008 ? -1.3572 ? 2.8445 ? 1.0307 ? -0.0609 ? -0.5712 ? 1.1617 ? 0.2176 ? 1.5208 ? 1.9406 ? -1.2026 ? 0.5357 ? 6 'X-RAY DIFFRACTION' ? refined 13.1067 57.9001 23.7642 1.6499 ? 0.1663 ? 0.2678 ? 0.7123 ? -0.4380 ? 1.4458 ? 0.6569 ? -1.2122 ? 0.1428 ? 2.7881 ? -1.4214 ? 2.8813 ? 0.1028 ? -1.7081 ? 1.1638 ? 0.8755 ? -1.5397 ? 0.0729 ? 1.0884 ? 2.1242 ? 0.1856 ? 7 'X-RAY DIFFRACTION' ? refined 8.3082 40.7655 27.7145 1.1283 ? -0.3513 ? 0.0531 ? 0.8944 ? -0.0360 ? 1.1670 ? 0.7554 ? -1.0216 ? -0.9611 ? 4.8685 ? -0.2381 ? 2.7739 ? 0.3927 ? -0.7270 ? 1.3583 ? 1.7361 ? 0.9692 ? 0.5007 ? 0.3268 ? -0.3538 ? 0.3722 ? 8 'X-RAY DIFFRACTION' ? refined 16.1530 71.1641 18.7734 1.8323 ? 0.6376 ? 0.3317 ? 2.9547 ? -1.2301 ? 1.4591 ? 1.8551 ? 0.7454 ? 0.6663 ? 4.2752 ? 1.0016 ? 1.1570 ? 0.9091 ? 0.2921 ? 0.6351 ? 0.7836 ? -0.5876 ? -0.8771 ? -1.5044 ? 0.3858 ? -0.0523 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 8 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 7 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'K' and (resid 1 through 8 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;chain 'L' and (resid 1 through 7 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;chain 'E' and (resid 2 through 6 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;chain 'I' and (resid 1 through 9 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 1 through 9 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 2 through 6 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DA OP3 O N N 14 DA P P N N 15 DA OP1 O N N 16 DA OP2 O N N 17 DA "O5'" O N N 18 DA "C5'" C N N 19 DA "C4'" C N R 20 DA "O4'" O N N 21 DA "C3'" C N S 22 DA "O3'" O N N 23 DA "C2'" C N N 24 DA "C1'" C N R 25 DA N9 N Y N 26 DA C8 C Y N 27 DA N7 N Y N 28 DA C5 C Y N 29 DA C6 C Y N 30 DA N6 N N N 31 DA N1 N Y N 32 DA C2 C Y N 33 DA N3 N Y N 34 DA C4 C Y N 35 DA HOP3 H N N 36 DA HOP2 H N N 37 DA "H5'" H N N 38 DA "H5''" H N N 39 DA "H4'" H N N 40 DA "H3'" H N N 41 DA "HO3'" H N N 42 DA "H2'" H N N 43 DA "H2''" H N N 44 DA "H1'" H N N 45 DA H8 H N N 46 DA H61 H N N 47 DA H62 H N N 48 DA H2 H N N 49 DC OP3 O N N 50 DC P P N N 51 DC OP1 O N N 52 DC OP2 O N N 53 DC "O5'" O N N 54 DC "C5'" C N N 55 DC "C4'" C N R 56 DC "O4'" O N N 57 DC "C3'" C N S 58 DC "O3'" O N N 59 DC "C2'" C N N 60 DC "C1'" C N R 61 DC N1 N N N 62 DC C2 C N N 63 DC O2 O N N 64 DC N3 N N N 65 DC C4 C N N 66 DC N4 N N N 67 DC C5 C N N 68 DC C6 C N N 69 DC HOP3 H N N 70 DC HOP2 H N N 71 DC "H5'" H N N 72 DC "H5''" H N N 73 DC "H4'" H N N 74 DC "H3'" H N N 75 DC "HO3'" H N N 76 DC "H2'" H N N 77 DC "H2''" H N N 78 DC "H1'" H N N 79 DC H41 H N N 80 DC H42 H N N 81 DC H5 H N N 82 DC H6 H N N 83 DG OP3 O N N 84 DG P P N N 85 DG OP1 O N N 86 DG OP2 O N N 87 DG "O5'" O N N 88 DG "C5'" C N N 89 DG "C4'" C N R 90 DG "O4'" O N N 91 DG "C3'" C N S 92 DG "O3'" O N N 93 DG "C2'" C N N 94 DG "C1'" C N R 95 DG N9 N Y N 96 DG C8 C Y N 97 DG N7 N Y N 98 DG C5 C Y N 99 DG C6 C N N 100 DG O6 O N N 101 DG N1 N N N 102 DG C2 C N N 103 DG N2 N N N 104 DG N3 N N N 105 DG C4 C Y N 106 DG HOP3 H N N 107 DG HOP2 H N N 108 DG "H5'" H N N 109 DG "H5''" H N N 110 DG "H4'" H N N 111 DG "H3'" H N N 112 DG "HO3'" H N N 113 DG "H2'" H N N 114 DG "H2''" H N N 115 DG "H1'" H N N 116 DG H8 H N N 117 DG H1 H N N 118 DG H21 H N N 119 DG H22 H N N 120 DSN N N N N 121 DSN CA C N R 122 DSN C C N N 123 DSN O O N N 124 DSN OXT O N N 125 DSN CB C N N 126 DSN OG O N N 127 DSN H H N N 128 DSN H2 H N N 129 DSN HA H N N 130 DSN HXT H N N 131 DSN HB2 H N N 132 DSN HB3 H N N 133 DSN HG H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 DVA N N N N 171 DVA CA C N R 172 DVA CB C N N 173 DVA CG1 C N N 174 DVA CG2 C N N 175 DVA C C N N 176 DVA O O N N 177 DVA OXT O N N 178 DVA H H N N 179 DVA H2 H N N 180 DVA HA H N N 181 DVA HB H N N 182 DVA HG11 H N N 183 DVA HG12 H N N 184 DVA HG13 H N N 185 DVA HG21 H N N 186 DVA HG22 H N N 187 DVA HG23 H N N 188 DVA HXT H N N 189 HOH O O N N 190 HOH H1 H N N 191 HOH H2 H N N 192 MVA N N N N 193 MVA CN C N N 194 MVA CA C N S 195 MVA CB C N N 196 MVA CG1 C N N 197 MVA CG2 C N N 198 MVA C C N N 199 MVA O O N N 200 MVA OXT O N N 201 MVA H H N N 202 MVA HN1 H N N 203 MVA HN2 H N N 204 MVA HN3 H N N 205 MVA HA H N N 206 MVA HB H N N 207 MVA HG11 H N N 208 MVA HG12 H N N 209 MVA HG13 H N N 210 MVA HG21 H N N 211 MVA HG22 H N N 212 MVA HG23 H N N 213 MVA HXT H N N 214 N2C N N N N 215 N2C CA C N R 216 N2C CB C N N 217 N2C SG S N N 218 N2C CD C N N 219 N2C CN C N N 220 N2C C C N N 221 N2C O O N N 222 N2C OXT O N N 223 N2C H H N N 224 N2C HA H N N 225 N2C HB2 H N N 226 N2C HB3 H N N 227 N2C HD1 H N N 228 N2C HD2 H N N 229 N2C HD3 H N N 230 N2C HN1 H N N 231 N2C HN2 H N N 232 N2C HN3 H N N 233 N2C HXT H N N 234 NCY N N N N 235 NCY CA C N R 236 NCY CB C N N 237 NCY SG S N N 238 NCY CN C N N 239 NCY C C N N 240 NCY O O N N 241 NCY OXT O N N 242 NCY H H N N 243 NCY HA H N N 244 NCY HB2 H N N 245 NCY HB3 H N N 246 NCY HG H N N 247 NCY HCN1 H N N 248 NCY HCN2 H N N 249 NCY HCN3 H N N 250 NCY HXT H N N 251 PRO N N N N 252 PRO CA C N S 253 PRO C C N N 254 PRO O O N N 255 PRO CB C N N 256 PRO CG C N N 257 PRO CD C N N 258 PRO OXT O N N 259 PRO H H N N 260 PRO HA H N N 261 PRO HB2 H N N 262 PRO HB3 H N N 263 PRO HG2 H N N 264 PRO HG3 H N N 265 PRO HD2 H N N 266 PRO HD3 H N N 267 PRO HXT H N N 268 PXZ C1 C N N 269 PXZ C0 C N N 270 PXZ O1 O N N 271 PXZ C2 C N N 272 PXZ N2 N N N 273 PXZ C3 C N N 274 PXZ O3 O N N 275 PXZ C4 C N N 276 PXZ O5 O N N 277 PXZ C6 C Y N 278 PXZ C7 C Y N 279 PXZ C8 C Y N 280 PXZ C9 C Y N 281 PXZ "C0'" C N N 282 PXZ "O1'" O N N 283 PXZ N10 N N N 284 PXZ C11 C N N 285 PXZ C12 C N N 286 PXZ C13 C Y N 287 PXZ C14 C Y N 288 PXZ C15 C N N 289 PXZ C16 C N N 290 PXZ HN21 H N N 291 PXZ HN22 H N N 292 PXZ H7 H N N 293 PXZ H8 H N N 294 PXZ H151 H N N 295 PXZ H152 H N N 296 PXZ H153 H N N 297 PXZ H161 H N N 298 PXZ H162 H N N 299 PXZ H163 H N N 300 PXZ "OXT'" O N N 301 PXZ OXT O N N 302 PXZ "HXT'" H N N 303 PXZ HXT H N N 304 QUI N1 N Y N 305 QUI C2 C Y N 306 QUI C3 C Y N 307 QUI N4 N Y N 308 QUI C5 C Y N 309 QUI C6 C Y N 310 QUI C7 C Y N 311 QUI C8 C Y N 312 QUI C9 C Y N 313 QUI C10 C Y N 314 QUI C C N N 315 QUI O1 O N N 316 QUI O2 O N N 317 QUI H3 H N N 318 QUI H5 H N N 319 QUI H6 H N N 320 QUI H7 H N N 321 QUI H8 H N N 322 QUI HO2 H N N 323 SAR N N N N 324 SAR CA C N N 325 SAR C C N N 326 SAR O O N N 327 SAR CN C N N 328 SAR OXT O N N 329 SAR H H N N 330 SAR HA2 H N N 331 SAR HA3 H N N 332 SAR HN1 H N N 333 SAR HN2 H N N 334 SAR HN3 H N N 335 SAR HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DA OP3 P sing N N 13 DA OP3 HOP3 sing N N 14 DA P OP1 doub N N 15 DA P OP2 sing N N 16 DA P "O5'" sing N N 17 DA OP2 HOP2 sing N N 18 DA "O5'" "C5'" sing N N 19 DA "C5'" "C4'" sing N N 20 DA "C5'" "H5'" sing N N 21 DA "C5'" "H5''" sing N N 22 DA "C4'" "O4'" sing N N 23 DA "C4'" "C3'" sing N N 24 DA "C4'" "H4'" sing N N 25 DA "O4'" "C1'" sing N N 26 DA "C3'" "O3'" sing N N 27 DA "C3'" "C2'" sing N N 28 DA "C3'" "H3'" sing N N 29 DA "O3'" "HO3'" sing N N 30 DA "C2'" "C1'" sing N N 31 DA "C2'" "H2'" sing N N 32 DA "C2'" "H2''" sing N N 33 DA "C1'" N9 sing N N 34 DA "C1'" "H1'" sing N N 35 DA N9 C8 sing Y N 36 DA N9 C4 sing Y N 37 DA C8 N7 doub Y N 38 DA C8 H8 sing N N 39 DA N7 C5 sing Y N 40 DA C5 C6 sing Y N 41 DA C5 C4 doub Y N 42 DA C6 N6 sing N N 43 DA C6 N1 doub Y N 44 DA N6 H61 sing N N 45 DA N6 H62 sing N N 46 DA N1 C2 sing Y N 47 DA C2 N3 doub Y N 48 DA C2 H2 sing N N 49 DA N3 C4 sing Y N 50 DC OP3 P sing N N 51 DC OP3 HOP3 sing N N 52 DC P OP1 doub N N 53 DC P OP2 sing N N 54 DC P "O5'" sing N N 55 DC OP2 HOP2 sing N N 56 DC "O5'" "C5'" sing N N 57 DC "C5'" "C4'" sing N N 58 DC "C5'" "H5'" sing N N 59 DC "C5'" "H5''" sing N N 60 DC "C4'" "O4'" sing N N 61 DC "C4'" "C3'" sing N N 62 DC "C4'" "H4'" sing N N 63 DC "O4'" "C1'" sing N N 64 DC "C3'" "O3'" sing N N 65 DC "C3'" "C2'" sing N N 66 DC "C3'" "H3'" sing N N 67 DC "O3'" "HO3'" sing N N 68 DC "C2'" "C1'" sing N N 69 DC "C2'" "H2'" sing N N 70 DC "C2'" "H2''" sing N N 71 DC "C1'" N1 sing N N 72 DC "C1'" "H1'" sing N N 73 DC N1 C2 sing N N 74 DC N1 C6 sing N N 75 DC C2 O2 doub N N 76 DC C2 N3 sing N N 77 DC N3 C4 doub N N 78 DC C4 N4 sing N N 79 DC C4 C5 sing N N 80 DC N4 H41 sing N N 81 DC N4 H42 sing N N 82 DC C5 C6 doub N N 83 DC C5 H5 sing N N 84 DC C6 H6 sing N N 85 DG OP3 P sing N N 86 DG OP3 HOP3 sing N N 87 DG P OP1 doub N N 88 DG P OP2 sing N N 89 DG P "O5'" sing N N 90 DG OP2 HOP2 sing N N 91 DG "O5'" "C5'" sing N N 92 DG "C5'" "C4'" sing N N 93 DG "C5'" "H5'" sing N N 94 DG "C5'" "H5''" sing N N 95 DG "C4'" "O4'" sing N N 96 DG "C4'" "C3'" sing N N 97 DG "C4'" "H4'" sing N N 98 DG "O4'" "C1'" sing N N 99 DG "C3'" "O3'" sing N N 100 DG "C3'" "C2'" sing N N 101 DG "C3'" "H3'" sing N N 102 DG "O3'" "HO3'" sing N N 103 DG "C2'" "C1'" sing N N 104 DG "C2'" "H2'" sing N N 105 DG "C2'" "H2''" sing N N 106 DG "C1'" N9 sing N N 107 DG "C1'" "H1'" sing N N 108 DG N9 C8 sing Y N 109 DG N9 C4 sing Y N 110 DG C8 N7 doub Y N 111 DG C8 H8 sing N N 112 DG N7 C5 sing Y N 113 DG C5 C6 sing N N 114 DG C5 C4 doub Y N 115 DG C6 O6 doub N N 116 DG C6 N1 sing N N 117 DG N1 C2 sing N N 118 DG N1 H1 sing N N 119 DG C2 N2 sing N N 120 DG C2 N3 doub N N 121 DG N2 H21 sing N N 122 DG N2 H22 sing N N 123 DG N3 C4 sing N N 124 DSN N CA sing N N 125 DSN N H sing N N 126 DSN N H2 sing N N 127 DSN CA C sing N N 128 DSN CA CB sing N N 129 DSN CA HA sing N N 130 DSN C O doub N N 131 DSN C OXT sing N N 132 DSN OXT HXT sing N N 133 DSN CB OG sing N N 134 DSN CB HB2 sing N N 135 DSN CB HB3 sing N N 136 DSN OG HG sing N N 137 DT OP3 P sing N N 138 DT OP3 HOP3 sing N N 139 DT P OP1 doub N N 140 DT P OP2 sing N N 141 DT P "O5'" sing N N 142 DT OP2 HOP2 sing N N 143 DT "O5'" "C5'" sing N N 144 DT "C5'" "C4'" sing N N 145 DT "C5'" "H5'" sing N N 146 DT "C5'" "H5''" sing N N 147 DT "C4'" "O4'" sing N N 148 DT "C4'" "C3'" sing N N 149 DT "C4'" "H4'" sing N N 150 DT "O4'" "C1'" sing N N 151 DT "C3'" "O3'" sing N N 152 DT "C3'" "C2'" sing N N 153 DT "C3'" "H3'" sing N N 154 DT "O3'" "HO3'" sing N N 155 DT "C2'" "C1'" sing N N 156 DT "C2'" "H2'" sing N N 157 DT "C2'" "H2''" sing N N 158 DT "C1'" N1 sing N N 159 DT "C1'" "H1'" sing N N 160 DT N1 C2 sing N N 161 DT N1 C6 sing N N 162 DT C2 O2 doub N N 163 DT C2 N3 sing N N 164 DT N3 C4 sing N N 165 DT N3 H3 sing N N 166 DT C4 O4 doub N N 167 DT C4 C5 sing N N 168 DT C5 C7 sing N N 169 DT C5 C6 doub N N 170 DT C7 H71 sing N N 171 DT C7 H72 sing N N 172 DT C7 H73 sing N N 173 DT C6 H6 sing N N 174 DVA N CA sing N N 175 DVA N H sing N N 176 DVA N H2 sing N N 177 DVA CA CB sing N N 178 DVA CA C sing N N 179 DVA CA HA sing N N 180 DVA CB CG1 sing N N 181 DVA CB CG2 sing N N 182 DVA CB HB sing N N 183 DVA CG1 HG11 sing N N 184 DVA CG1 HG12 sing N N 185 DVA CG1 HG13 sing N N 186 DVA CG2 HG21 sing N N 187 DVA CG2 HG22 sing N N 188 DVA CG2 HG23 sing N N 189 DVA C O doub N N 190 DVA C OXT sing N N 191 DVA OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 MVA N CN sing N N 195 MVA N CA sing N N 196 MVA N H sing N N 197 MVA CN HN1 sing N N 198 MVA CN HN2 sing N N 199 MVA CN HN3 sing N N 200 MVA CA CB sing N N 201 MVA CA C sing N N 202 MVA CA HA sing N N 203 MVA CB CG1 sing N N 204 MVA CB CG2 sing N N 205 MVA CB HB sing N N 206 MVA CG1 HG11 sing N N 207 MVA CG1 HG12 sing N N 208 MVA CG1 HG13 sing N N 209 MVA CG2 HG21 sing N N 210 MVA CG2 HG22 sing N N 211 MVA CG2 HG23 sing N N 212 MVA C O doub N N 213 MVA C OXT sing N N 214 MVA OXT HXT sing N N 215 N2C N CA sing N N 216 N2C N CN sing N N 217 N2C N H sing N N 218 N2C CA CB sing N N 219 N2C CA C sing N N 220 N2C CA HA sing N N 221 N2C CB SG sing N N 222 N2C CB HB2 sing N N 223 N2C CB HB3 sing N N 224 N2C SG CD sing N N 225 N2C CD HD1 sing N N 226 N2C CD HD2 sing N N 227 N2C CD HD3 sing N N 228 N2C CN HN1 sing N N 229 N2C CN HN2 sing N N 230 N2C CN HN3 sing N N 231 N2C C O doub N N 232 N2C C OXT sing N N 233 N2C OXT HXT sing N N 234 NCY N CA sing N N 235 NCY N CN sing N N 236 NCY N H sing N N 237 NCY CA CB sing N N 238 NCY CA C sing N N 239 NCY CA HA sing N N 240 NCY CB SG sing N N 241 NCY CB HB2 sing N N 242 NCY CB HB3 sing N N 243 NCY SG HG sing N N 244 NCY CN HCN1 sing N N 245 NCY CN HCN2 sing N N 246 NCY CN HCN3 sing N N 247 NCY C O doub N N 248 NCY C OXT sing N N 249 NCY OXT HXT sing N N 250 PRO N CA sing N N 251 PRO N CD sing N N 252 PRO N H sing N N 253 PRO CA C sing N N 254 PRO CA CB sing N N 255 PRO CA HA sing N N 256 PRO C O doub N N 257 PRO C OXT sing N N 258 PRO CB CG sing N N 259 PRO CB HB2 sing N N 260 PRO CB HB3 sing N N 261 PRO CG CD sing N N 262 PRO CG HG2 sing N N 263 PRO CG HG3 sing N N 264 PRO CD HD2 sing N N 265 PRO CD HD3 sing N N 266 PRO OXT HXT sing N N 267 PXZ C1 C0 sing N N 268 PXZ C1 C2 doub N N 269 PXZ C1 C11 sing N N 270 PXZ C0 O1 doub N N 271 PXZ C2 N2 sing N N 272 PXZ C2 C3 sing N N 273 PXZ N2 HN21 sing N N 274 PXZ N2 HN22 sing N N 275 PXZ C3 O3 doub N N 276 PXZ C3 C4 sing N N 277 PXZ C4 C12 doub N N 278 PXZ C4 C15 sing N N 279 PXZ O5 C12 sing N N 280 PXZ O5 C13 sing N N 281 PXZ C6 C7 doub Y N 282 PXZ C6 C13 sing Y N 283 PXZ C6 C16 sing N N 284 PXZ C7 C8 sing Y N 285 PXZ C7 H7 sing N N 286 PXZ C8 C9 doub Y N 287 PXZ C8 H8 sing N N 288 PXZ C9 "C0'" sing N N 289 PXZ C9 C14 sing Y N 290 PXZ "C0'" "O1'" doub N N 291 PXZ N10 C11 doub N N 292 PXZ N10 C14 sing N N 293 PXZ C11 C12 sing N N 294 PXZ C13 C14 doub Y N 295 PXZ C15 H151 sing N N 296 PXZ C15 H152 sing N N 297 PXZ C15 H153 sing N N 298 PXZ C16 H161 sing N N 299 PXZ C16 H162 sing N N 300 PXZ C16 H163 sing N N 301 PXZ "C0'" "OXT'" sing N N 302 PXZ C0 OXT sing N N 303 PXZ "OXT'" "HXT'" sing N N 304 PXZ OXT HXT sing N N 305 QUI N1 C2 doub Y N 306 QUI N1 C9 sing Y N 307 QUI C2 C3 sing Y N 308 QUI C2 C sing N N 309 QUI C3 N4 doub Y N 310 QUI C3 H3 sing N N 311 QUI N4 C10 sing Y N 312 QUI C5 C6 doub Y N 313 QUI C5 C10 sing Y N 314 QUI C5 H5 sing N N 315 QUI C6 C7 sing Y N 316 QUI C6 H6 sing N N 317 QUI C7 C8 doub Y N 318 QUI C7 H7 sing N N 319 QUI C8 C9 sing Y N 320 QUI C8 H8 sing N N 321 QUI C9 C10 doub Y N 322 QUI C O1 doub N N 323 QUI C O2 sing N N 324 QUI O2 HO2 sing N N 325 SAR N CA sing N N 326 SAR N CN sing N N 327 SAR N H sing N N 328 SAR CA C sing N N 329 SAR CA HA2 sing N N 330 SAR CA HA3 sing N N 331 SAR C O doub N N 332 SAR C OXT sing N N 333 SAR CN HN1 sing N N 334 SAR CN HN2 sing N N 335 SAR CN HN3 sing N N 336 SAR OXT HXT sing N N 337 THR N CA sing N N 338 THR N H sing N N 339 THR N H2 sing N N 340 THR CA C sing N N 341 THR CA CB sing N N 342 THR CA HA sing N N 343 THR C O doub N N 344 THR C OXT sing N N 345 THR CB OG1 sing N N 346 THR CB CG2 sing N N 347 THR CB HB sing N N 348 THR OG1 HG1 sing N N 349 THR CG2 HG21 sing N N 350 THR CG2 HG22 sing N N 351 THR CG2 HG23 sing N N 352 THR OXT HXT sing N N 353 # _ndb_struct_conf_na.entry_id 8YS7 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 6 1_555 A DG 2 1_555 0.047 -0.081 0.659 -2.745 -0.817 -1.209 1 C_DC6:DG2_B C 6 ? B 2 ? 19 1 1 B DT 7 1_555 A DA 1 1_555 -0.407 -0.219 0.552 5.930 -13.881 -0.995 2 C_DT7:DA1_B C 7 ? B 1 ? 20 1 1 C DA 1 1_555 D DT 7 1_555 0.237 -0.430 0.529 -2.518 -11.510 -1.727 3 K_DA1:DT7_L K 1 ? L 7 ? 20 1 1 C DG 2 1_555 D DC 6 1_555 -0.110 0.053 0.622 2.461 0.657 -0.532 4 K_DG2:DC6_L K 2 ? L 6 ? 19 1 1 C DC 4 1_555 D DG 5 1_555 0.629 -0.143 0.368 0.817 16.580 -6.237 5 K_DC4:DG5_L K 4 ? L 5 ? 19 1 1 C DC 5 1_555 D DG 4 1_555 1.003 -0.290 0.213 13.391 16.655 8.016 6 K_DC5:DG4_L K 5 ? L 4 ? 19 1 1 A DC 4 1_555 B DG 5 1_555 0.943 -0.140 0.969 -11.402 16.829 0.909 7 B_DC4:DG5_C B 4 ? C 5 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 -0.076 0.117 0.640 -5.306 -3.310 1.228 8 B_DC5:DG4_C B 5 ? C 4 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.358 0.073 -0.168 -9.810 -6.837 -6.018 9 B_DC6:DG3_C B 6 ? C 3 ? 19 1 1 A DG 7 1_555 B DC 2 1_555 -0.155 -0.183 -0.076 12.685 -7.406 1.558 10 B_DG7:DC2_C B 7 ? C 2 ? 19 1 1 A DT 8 1_555 B DA 1 1_555 0.444 -0.051 -0.589 13.718 18.623 -8.646 11 B_DT8:DA1_C B 8 ? C 1 ? 20 1 1 C DC 6 1_555 D DG 3 1_555 0.003 -0.007 0.686 -12.723 0.174 -2.395 12 K_DC6:DG3_L K 6 ? L 3 ? 19 1 1 C DG 7 1_555 D DC 2 1_555 -0.432 -0.373 0.585 18.659 6.222 -5.813 13 K_DG7:DC2_L K 7 ? L 2 ? 19 1 1 C DT 8 1_555 D DA 1 1_555 -1.527 -4.768 0.120 -22.548 -5.076 84.298 14 K_DT8:DA1_L K 8 ? L 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 6 1_555 A DG 2 1_555 B DT 7 1_555 A DA 1 1_555 0.070 0.306 3.391 -1.197 4.145 27.516 -0.400 -0.445 3.394 8.647 2.497 27.846 1 CC_DC6DT7:DA1DG2_BB C 6 ? B 2 ? C 7 ? B 1 ? 1 B DT 7 1_555 A DA 1 1_555 C DA 1 1_555 D DT 7 1_555 -0.038 1.269 3.893 1.093 -6.547 -19.114 0.135 0.518 4.091 18.991 3.171 -20.224 2 CK_DT7DA1:DT7DA1_LB C 7 ? B 1 ? K 1 ? L 7 ? 1 C DA 1 1_555 D DT 7 1_555 C DG 2 1_555 D DC 6 1_555 0.554 0.620 3.425 0.802 3.060 28.984 0.525 -0.916 3.484 6.091 -1.596 29.152 3 KK_DA1DG2:DC6DT7_LL K 1 ? L 7 ? K 2 ? L 6 ? 1 C DG 2 1_555 D DC 6 1_555 C DC 4 1_555 D DG 5 1_555 -0.302 2.402 7.086 6.541 10.478 14.816 -5.366 8.733 6.656 33.938 -21.185 19.267 4 KK_DG2DC4:DG5DC6_LL K 2 ? L 6 ? K 4 ? L 5 ? 1 C DC 4 1_555 D DG 5 1_555 C DC 5 1_555 D DG 4 1_555 0.759 0.837 3.385 7.528 27.731 19.367 -3.833 0.144 2.748 54.727 -14.857 34.538 5 KK_DC4DC5:DG4DG5_LL K 4 ? L 5 ? K 5 ? L 4 ? 1 A DC 4 1_555 B DG 5 1_555 A DC 5 1_555 B DG 4 1_555 -0.273 1.727 3.461 3.832 -3.975 20.108 6.480 2.398 2.965 -11.118 -10.716 20.845 6 BB_DC4DC5:DG4DG5_CC B 4 ? C 5 ? B 5 ? C 4 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 1.006 2.017 6.736 11.204 -4.524 31.261 5.054 2.091 6.367 -8.029 -19.886 33.460 7 BB_DC5DC6:DG3DG4_CC B 5 ? C 4 ? B 6 ? C 3 ? 1 A DC 6 1_555 B DG 3 1_555 A DG 7 1_555 B DC 2 1_555 0.137 2.598 2.871 -1.225 0.906 7.502 16.787 -4.632 3.098 6.834 9.239 7.655 8 BB_DC6DG7:DC2DG3_CC B 6 ? C 3 ? B 7 ? C 2 ? 1 A DG 7 1_555 B DC 2 1_555 A DT 8 1_555 B DA 1 1_555 -0.772 1.553 6.266 -7.853 -2.736 23.003 5.313 -2.896 5.976 -6.591 18.916 24.441 9 BB_DG7DT8:DA1DC2_CC B 7 ? C 2 ? B 8 ? C 1 ? 1 C DC 6 1_555 D DG 3 1_555 C DG 7 1_555 D DC 2 1_555 0.107 2.047 2.712 1.090 3.363 6.920 4.939 2.507 3.315 25.760 -8.346 7.770 10 KK_DC6DG7:DC2DG3_LL K 6 ? L 3 ? K 7 ? L 2 ? 1 C DG 7 1_555 D DC 2 1_555 C DT 8 1_555 D DA 1 1_555 2.585 6.637 -1.886 164.998 -24.082 106.560 3.268 -1.697 -0.563 -12.230 -83.792 172.087 11 KK_DG7DT8:DA1DC2_LL K 7 ? L 2 ? K 8 ? L 1 ? # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, Taiwan)' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7DQ0 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8YS7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.007538 _atom_sites.fract_transf_matrix[1][2] 0.004352 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008704 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019979 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ # loop_ #