HEADER LYASE 24-MAR-24 8YT2 TITLE CRYSTAL STRUCTURE OF ACMSD MUTANT W194A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-AMINO-3-CARBOXYMUCONATE 6-SEMIALDEHYDE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ALPHA-AMINO-BETA-CARBOXYMUCONATE-EPSILON-SEMIALDEHYDE- COMPND 5 DECARBOXYLASE, ACMSD; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: NBAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KYNURENINE, DECARBOXYLASE, NAD HOMEOSTASIS, TRYPTOPHAN METABOLISM, KEYWDS 2 METALLOENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YANG,A.LIU REVDAT 2 30-APR-25 8YT2 1 JRNL REVDAT 1 16-OCT-24 8YT2 0 JRNL AUTH Y.YANG,I.DAVIS,R.A.ALTMAN,A.LIU JRNL TITL ALPHA-AMINO-BETA-CARBOXYMUCONATE-EPSILON-SEMIALDEHYDE JRNL TITL 2 DECARBOXYLASE CATALYZES ENOL/KETO TAUTOMERIZATION OF JRNL TITL 3 OXALOACETATE. JRNL REF J.BIOL.CHEM. V. 300 07878 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39395800 JRNL DOI 10.1016/J.JBC.2024.107878 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 79920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1000 - 4.8600 0.99 5786 149 0.1619 0.1816 REMARK 3 2 4.8600 - 3.8600 1.00 5658 145 0.1528 0.1943 REMARK 3 3 3.8600 - 3.3700 1.00 5623 145 0.1804 0.2004 REMARK 3 4 3.3700 - 3.0600 1.00 5575 143 0.1991 0.2399 REMARK 3 5 3.0600 - 2.8400 1.00 5598 143 0.2190 0.2816 REMARK 3 6 2.8400 - 2.6800 1.00 5579 143 0.2121 0.2592 REMARK 3 7 2.6800 - 2.5400 1.00 5532 142 0.2089 0.2342 REMARK 3 8 2.5400 - 2.4300 1.00 5560 143 0.2126 0.2402 REMARK 3 9 2.4300 - 2.3400 1.00 5559 142 0.2141 0.2809 REMARK 3 10 2.3400 - 2.2600 1.00 5512 142 0.2243 0.2587 REMARK 3 11 2.2600 - 2.1900 1.00 5530 142 0.2347 0.2739 REMARK 3 12 2.1900 - 2.1200 1.00 5566 142 0.2382 0.2838 REMARK 3 13 2.1200 - 2.0700 1.00 5486 141 0.2581 0.3137 REMARK 3 14 2.0700 - 2.0200 0.97 5358 136 0.2833 0.3218 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7890 REMARK 3 ANGLE : 0.858 10692 REMARK 3 CHIRALITY : 0.053 1145 REMARK 3 PLANARITY : 0.006 1407 REMARK 3 DIHEDRAL : 8.138 1043 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% (V/V) MALONATE PH 7.0, 0.1M SODIUM REMARK 280 CITRATE TRIBASIC PH 5.6, 12% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 EVAPORATION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.05250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.05250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.00100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.82350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.00100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.82350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.05250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.00100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.82350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.05250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.00100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.82350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 37 REMARK 465 VAL A 334 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 334 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 SER C 35 REMARK 465 ALA C 36 REMARK 465 LYS C 37 REMARK 465 GLY C 38 REMARK 465 ASP C 39 REMARK 465 VAL C 334 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 67 CE REMARK 480 THR B 165 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE C 12 O HOH C 501 1.97 REMARK 500 O HOH A 501 O HOH A 545 2.00 REMARK 500 N GLY A 38 O HOH A 501 2.04 REMARK 500 O HOH C 553 O HOH C 612 2.09 REMARK 500 OE2 GLU C 252 O HOH C 502 2.10 REMARK 500 O HOH C 625 O HOH C 639 2.11 REMARK 500 O HOH B 693 O HOH C 596 2.13 REMARK 500 O HOH A 702 O HOH A 756 2.14 REMARK 500 O HOH B 539 O HOH B 671 2.14 REMARK 500 O HOH B 612 O HOH B 695 2.14 REMARK 500 O HOH A 708 O HOH A 710 2.16 REMARK 500 OE2 GLU A 66 O HOH A 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 671 O HOH C 597 6345 1.87 REMARK 500 O HOH A 511 O HOH A 742 3454 1.99 REMARK 500 O HOH A 770 O HOH C 639 5555 2.00 REMARK 500 O HOH A 538 O HOH A 727 3454 2.01 REMARK 500 O HOH A 748 O HOH C 587 8545 2.05 REMARK 500 O HOH A 506 O HOH A 513 3454 2.07 REMARK 500 O HOH A 608 O HOH B 668 8545 2.16 REMARK 500 NE2 GLN A 19 OE2 GLU A 65 3454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 294 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 112.06 -169.63 REMARK 500 SER A 35 -142.28 -137.95 REMARK 500 ASN A 111 77.46 -162.82 REMARK 500 SER A 323 -51.73 -154.75 REMARK 500 ASP B 25 97.50 -162.11 REMARK 500 HIS B 28 -5.18 -158.04 REMARK 500 MET B 45 78.66 -110.95 REMARK 500 ASN B 111 75.53 -164.05 REMARK 500 SER B 323 -54.03 -155.11 REMARK 500 ASN B 331 60.65 61.90 REMARK 500 ARG C 15 77.97 -63.52 REMARK 500 PHE C 24 -60.93 -93.12 REMARK 500 VAL C 53 -168.80 -129.37 REMARK 500 ASN C 111 73.00 -160.54 REMARK 500 SER C 323 -49.25 -158.94 REMARK 500 SER C 323 -48.73 -159.19 REMARK 500 ASN C 331 78.25 54.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HIS A 11 NE2 101.3 REMARK 620 3 HIS A 177 NE2 103.1 100.7 REMARK 620 4 ASP A 294 OD1 81.7 101.1 156.3 REMARK 620 5 HOH A 629 O 161.7 96.4 78.0 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 9 NE2 REMARK 620 2 HIS B 11 NE2 97.7 REMARK 620 3 HIS B 177 NE2 100.6 102.0 REMARK 620 4 ASP B 294 OD1 78.7 109.9 148.0 REMARK 620 5 HOH B 614 O 159.5 102.7 78.2 91.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 9 NE2 REMARK 620 2 HIS C 11 NE2 93.3 REMARK 620 3 HIS C 177 NE2 98.5 96.4 REMARK 620 4 ASP C 294 OD1 85.1 104.9 158.3 REMARK 620 5 HOH C 549 O 148.0 118.0 84.6 81.3 REMARK 620 N 1 2 3 4 DBREF 8YT2 A 1 334 UNP Q83V25 Q83V25_PSEFL 1 334 DBREF 8YT2 B 1 334 UNP Q83V25 Q83V25_PSEFL 1 334 DBREF 8YT2 C 1 334 UNP Q83V25 Q83V25_PSEFL 1 334 SEQADV 8YT2 ALA A 194 UNP Q83V25 TRP 194 ENGINEERED MUTATION SEQADV 8YT2 ALA B 194 UNP Q83V25 TRP 194 ENGINEERED MUTATION SEQADV 8YT2 ALA C 194 UNP Q83V25 TRP 194 ENGINEERED MUTATION SEQRES 1 A 334 MET LYS LYS PRO ARG ILE ASP MET HIS SER HIS PHE PHE SEQRES 2 A 334 PRO ARG ILE SER GLU GLN GLU ALA ALA LYS PHE ASP ALA SEQRES 3 A 334 ASN HIS ALA PRO TRP LEU GLN VAL SER ALA LYS GLY ASP SEQRES 4 A 334 THR GLY SER ILE MET MET GLY LYS ASN ASN PHE ARG PRO SEQRES 5 A 334 VAL TYR GLN ALA LEU TRP ASP PRO ALA PHE ARG ILE GLU SEQRES 6 A 334 GLU MET ASP ALA GLN GLY VAL ASP VAL GLN VAL THR CYS SEQRES 7 A 334 ALA THR PRO VAL MET PHE GLY TYR THR TRP GLU ALA ASN SEQRES 8 A 334 LYS ALA ALA GLN TRP ALA GLU ARG MET ASN ASP PHE ALA SEQRES 9 A 334 LEU GLU PHE ALA ALA HIS ASN PRO GLN ARG ILE LYS VAL SEQRES 10 A 334 LEU ALA GLN VAL PRO LEU GLN ASP LEU ASP LEU ALA CYS SEQRES 11 A 334 LYS GLU ALA SER ARG ALA VAL ALA ALA GLY HIS LEU GLY SEQRES 12 A 334 ILE GLN ILE GLY ASN HIS LEU GLY ASP LYS ASP LEU ASP SEQRES 13 A 334 ASP ALA THR LEU GLU ALA PHE LEU THR HIS CYS ALA ASN SEQRES 14 A 334 GLU ASP ILE PRO ILE LEU VAL HIS PRO TRP ASP MET MET SEQRES 15 A 334 GLY GLY GLN ARG MET LYS LYS TRP MET LEU PRO ALA LEU SEQRES 16 A 334 VAL ALA MET PRO ALA GLU THR GLN LEU ALA ILE LEU SER SEQRES 17 A 334 LEU ILE LEU SER GLY ALA PHE GLU ARG ILE PRO LYS SER SEQRES 18 A 334 LEU LYS ILE CYS PHE GLY HIS GLY GLY GLY SER PHE ALA SEQRES 19 A 334 PHE LEU LEU GLY ARG VAL ASP ASN ALA TRP ARG HIS ARG SEQRES 20 A 334 ASP ILE VAL ARG GLU ASP CYS PRO ARG PRO PRO SER GLU SEQRES 21 A 334 TYR VAL ASP ARG PHE PHE VAL ASP SER ALA VAL PHE ASN SEQRES 22 A 334 PRO GLY ALA LEU GLU LEU LEU VAL SER VAL MET GLY GLU SEQRES 23 A 334 ASP ARG VAL MET LEU GLY SER ASP TYR PRO PHE PRO LEU SEQRES 24 A 334 GLY GLU GLN LYS ILE GLY GLY LEU VAL LEU SER SER ASN SEQRES 25 A 334 LEU GLY GLU SER ALA LYS ASP LYS ILE ILE SER GLY ASN SEQRES 26 A 334 ALA SER LYS PHE PHE ASN ILE ASN VAL SEQRES 1 B 334 MET LYS LYS PRO ARG ILE ASP MET HIS SER HIS PHE PHE SEQRES 2 B 334 PRO ARG ILE SER GLU GLN GLU ALA ALA LYS PHE ASP ALA SEQRES 3 B 334 ASN HIS ALA PRO TRP LEU GLN VAL SER ALA LYS GLY ASP SEQRES 4 B 334 THR GLY SER ILE MET MET GLY LYS ASN ASN PHE ARG PRO SEQRES 5 B 334 VAL TYR GLN ALA LEU TRP ASP PRO ALA PHE ARG ILE GLU SEQRES 6 B 334 GLU MET ASP ALA GLN GLY VAL ASP VAL GLN VAL THR CYS SEQRES 7 B 334 ALA THR PRO VAL MET PHE GLY TYR THR TRP GLU ALA ASN SEQRES 8 B 334 LYS ALA ALA GLN TRP ALA GLU ARG MET ASN ASP PHE ALA SEQRES 9 B 334 LEU GLU PHE ALA ALA HIS ASN PRO GLN ARG ILE LYS VAL SEQRES 10 B 334 LEU ALA GLN VAL PRO LEU GLN ASP LEU ASP LEU ALA CYS SEQRES 11 B 334 LYS GLU ALA SER ARG ALA VAL ALA ALA GLY HIS LEU GLY SEQRES 12 B 334 ILE GLN ILE GLY ASN HIS LEU GLY ASP LYS ASP LEU ASP SEQRES 13 B 334 ASP ALA THR LEU GLU ALA PHE LEU THR HIS CYS ALA ASN SEQRES 14 B 334 GLU ASP ILE PRO ILE LEU VAL HIS PRO TRP ASP MET MET SEQRES 15 B 334 GLY GLY GLN ARG MET LYS LYS TRP MET LEU PRO ALA LEU SEQRES 16 B 334 VAL ALA MET PRO ALA GLU THR GLN LEU ALA ILE LEU SER SEQRES 17 B 334 LEU ILE LEU SER GLY ALA PHE GLU ARG ILE PRO LYS SER SEQRES 18 B 334 LEU LYS ILE CYS PHE GLY HIS GLY GLY GLY SER PHE ALA SEQRES 19 B 334 PHE LEU LEU GLY ARG VAL ASP ASN ALA TRP ARG HIS ARG SEQRES 20 B 334 ASP ILE VAL ARG GLU ASP CYS PRO ARG PRO PRO SER GLU SEQRES 21 B 334 TYR VAL ASP ARG PHE PHE VAL ASP SER ALA VAL PHE ASN SEQRES 22 B 334 PRO GLY ALA LEU GLU LEU LEU VAL SER VAL MET GLY GLU SEQRES 23 B 334 ASP ARG VAL MET LEU GLY SER ASP TYR PRO PHE PRO LEU SEQRES 24 B 334 GLY GLU GLN LYS ILE GLY GLY LEU VAL LEU SER SER ASN SEQRES 25 B 334 LEU GLY GLU SER ALA LYS ASP LYS ILE ILE SER GLY ASN SEQRES 26 B 334 ALA SER LYS PHE PHE ASN ILE ASN VAL SEQRES 1 C 334 MET LYS LYS PRO ARG ILE ASP MET HIS SER HIS PHE PHE SEQRES 2 C 334 PRO ARG ILE SER GLU GLN GLU ALA ALA LYS PHE ASP ALA SEQRES 3 C 334 ASN HIS ALA PRO TRP LEU GLN VAL SER ALA LYS GLY ASP SEQRES 4 C 334 THR GLY SER ILE MET MET GLY LYS ASN ASN PHE ARG PRO SEQRES 5 C 334 VAL TYR GLN ALA LEU TRP ASP PRO ALA PHE ARG ILE GLU SEQRES 6 C 334 GLU MET ASP ALA GLN GLY VAL ASP VAL GLN VAL THR CYS SEQRES 7 C 334 ALA THR PRO VAL MET PHE GLY TYR THR TRP GLU ALA ASN SEQRES 8 C 334 LYS ALA ALA GLN TRP ALA GLU ARG MET ASN ASP PHE ALA SEQRES 9 C 334 LEU GLU PHE ALA ALA HIS ASN PRO GLN ARG ILE LYS VAL SEQRES 10 C 334 LEU ALA GLN VAL PRO LEU GLN ASP LEU ASP LEU ALA CYS SEQRES 11 C 334 LYS GLU ALA SER ARG ALA VAL ALA ALA GLY HIS LEU GLY SEQRES 12 C 334 ILE GLN ILE GLY ASN HIS LEU GLY ASP LYS ASP LEU ASP SEQRES 13 C 334 ASP ALA THR LEU GLU ALA PHE LEU THR HIS CYS ALA ASN SEQRES 14 C 334 GLU ASP ILE PRO ILE LEU VAL HIS PRO TRP ASP MET MET SEQRES 15 C 334 GLY GLY GLN ARG MET LYS LYS TRP MET LEU PRO ALA LEU SEQRES 16 C 334 VAL ALA MET PRO ALA GLU THR GLN LEU ALA ILE LEU SER SEQRES 17 C 334 LEU ILE LEU SER GLY ALA PHE GLU ARG ILE PRO LYS SER SEQRES 18 C 334 LEU LYS ILE CYS PHE GLY HIS GLY GLY GLY SER PHE ALA SEQRES 19 C 334 PHE LEU LEU GLY ARG VAL ASP ASN ALA TRP ARG HIS ARG SEQRES 20 C 334 ASP ILE VAL ARG GLU ASP CYS PRO ARG PRO PRO SER GLU SEQRES 21 C 334 TYR VAL ASP ARG PHE PHE VAL ASP SER ALA VAL PHE ASN SEQRES 22 C 334 PRO GLY ALA LEU GLU LEU LEU VAL SER VAL MET GLY GLU SEQRES 23 C 334 ASP ARG VAL MET LEU GLY SER ASP TYR PRO PHE PRO LEU SEQRES 24 C 334 GLY GLU GLN LYS ILE GLY GLY LEU VAL LEU SER SER ASN SEQRES 25 C 334 LEU GLY GLU SER ALA LYS ASP LYS ILE ILE SER GLY ASN SEQRES 26 C 334 ALA SER LYS PHE PHE ASN ILE ASN VAL HET ZN A 401 1 HET ZN B 401 1 HET ZN C 401 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *659(H2 O) HELIX 1 AA1 SER A 17 LYS A 23 1 7 HELIX 2 AA2 ALA A 56 TRP A 58 5 3 HELIX 3 AA3 ASP A 59 GLY A 71 1 13 HELIX 4 AA4 PRO A 81 PHE A 84 5 4 HELIX 5 AA5 GLU A 89 HIS A 110 1 22 HELIX 6 AA6 ASP A 125 ALA A 139 1 15 HELIX 7 AA7 ASP A 157 GLU A 170 1 14 HELIX 8 AA8 MET A 191 VAL A 196 1 6 HELIX 9 AA9 VAL A 196 SER A 212 1 17 HELIX 10 AB1 GLY A 213 ILE A 218 1 6 HELIX 11 AB2 HIS A 228 GLY A 231 5 4 HELIX 12 AB3 LEU A 236 ARG A 247 1 12 HELIX 13 AB4 ARG A 247 GLU A 252 1 6 HELIX 14 AB5 PRO A 257 PHE A 265 5 9 HELIX 15 AB6 ASN A 273 GLY A 285 1 13 HELIX 16 AB7 GLY A 305 SER A 310 1 6 HELIX 17 AB8 GLY A 314 SER A 323 1 10 HELIX 18 AB9 SER A 323 ASN A 331 1 9 HELIX 19 AC1 SER B 17 ALA B 26 1 10 HELIX 20 AC2 ALA B 56 TRP B 58 5 3 HELIX 21 AC3 ASP B 59 GLY B 71 1 13 HELIX 22 AC4 PRO B 81 PHE B 84 5 4 HELIX 23 AC5 GLU B 89 HIS B 110 1 22 HELIX 24 AC6 ASP B 125 ALA B 139 1 15 HELIX 25 AC7 ASP B 157 GLU B 170 1 14 HELIX 26 AC8 MET B 191 VAL B 196 1 6 HELIX 27 AC9 VAL B 196 SER B 212 1 17 HELIX 28 AD1 GLY B 213 ILE B 218 1 6 HELIX 29 AD2 HIS B 228 GLY B 231 5 4 HELIX 30 AD3 LEU B 236 ARG B 247 1 12 HELIX 31 AD4 ARG B 247 GLU B 252 1 6 HELIX 32 AD5 PRO B 257 PHE B 265 5 9 HELIX 33 AD6 ASN B 273 GLY B 285 1 13 HELIX 34 AD7 GLY B 305 SER B 310 1 6 HELIX 35 AD8 GLY B 314 SER B 323 1 10 HELIX 36 AD9 SER B 323 ASN B 331 1 9 HELIX 37 AE1 SER C 17 LYS C 23 1 7 HELIX 38 AE2 ASP C 59 GLY C 71 1 13 HELIX 39 AE3 PRO C 81 PHE C 84 5 4 HELIX 40 AE4 GLU C 89 HIS C 110 1 22 HELIX 41 AE5 ASP C 125 ALA C 139 1 15 HELIX 42 AE6 ASP C 157 GLU C 170 1 14 HELIX 43 AE7 MET C 191 VAL C 196 1 6 HELIX 44 AE8 VAL C 196 SER C 212 1 17 HELIX 45 AE9 GLY C 213 ILE C 218 1 6 HELIX 46 AF1 HIS C 228 GLY C 231 5 4 HELIX 47 AF2 LEU C 236 ARG C 247 1 12 HELIX 48 AF3 ARG C 247 GLU C 252 1 6 HELIX 49 AF4 PRO C 257 PHE C 265 5 9 HELIX 50 AF5 ASN C 273 GLY C 285 1 13 HELIX 51 AF6 GLY C 305 SER C 310 1 6 HELIX 52 AF7 GLY C 314 SER C 323 1 10 HELIX 53 AF8 SER C 323 PHE C 330 1 8 SHEET 1 AA1 3 ILE A 6 ASP A 7 0 SHEET 2 AA1 3 VAL A 74 ALA A 79 1 O VAL A 76 N ASP A 7 SHEET 3 AA1 3 HIS A 11 PHE A 12 1 N PHE A 12 O CYS A 78 SHEET 1 AA2 3 ILE A 6 ASP A 7 0 SHEET 2 AA2 3 VAL A 74 ALA A 79 1 O VAL A 76 N ASP A 7 SHEET 3 AA2 3 ILE A 115 VAL A 117 1 O LYS A 116 N THR A 77 SHEET 1 AA3 3 PRO A 30 VAL A 34 0 SHEET 2 AA3 3 THR A 40 MET A 45 -1 O MET A 44 N TRP A 31 SHEET 3 AA3 3 ASN A 48 TYR A 54 -1 O VAL A 53 N GLY A 41 SHEET 1 AA4 5 ILE A 144 GLY A 147 0 SHEET 2 AA4 5 ILE A 174 HIS A 177 1 O HIS A 177 N ILE A 146 SHEET 3 AA4 5 ILE A 224 PHE A 226 1 O CYS A 225 N VAL A 176 SHEET 4 AA4 5 PHE A 266 ASP A 268 1 O PHE A 266 N ILE A 224 SHEET 5 AA4 5 VAL A 289 MET A 290 1 O MET A 290 N VAL A 267 SHEET 1 AA5 3 ILE B 6 ASP B 7 0 SHEET 2 AA5 3 VAL B 74 ALA B 79 1 O VAL B 76 N ASP B 7 SHEET 3 AA5 3 HIS B 11 PHE B 12 1 N PHE B 12 O CYS B 78 SHEET 1 AA6 3 ILE B 6 ASP B 7 0 SHEET 2 AA6 3 VAL B 74 ALA B 79 1 O VAL B 76 N ASP B 7 SHEET 3 AA6 3 ILE B 115 VAL B 117 1 O LYS B 116 N THR B 77 SHEET 1 AA7 3 PRO B 30 VAL B 34 0 SHEET 2 AA7 3 THR B 40 MET B 45 -1 O MET B 44 N TRP B 31 SHEET 3 AA7 3 ASN B 48 TYR B 54 -1 O ARG B 51 N ILE B 43 SHEET 1 AA8 5 ILE B 144 GLY B 147 0 SHEET 2 AA8 5 ILE B 174 HIS B 177 1 O LEU B 175 N ILE B 144 SHEET 3 AA8 5 ILE B 224 PHE B 226 1 O CYS B 225 N VAL B 176 SHEET 4 AA8 5 PHE B 266 ASP B 268 1 O PHE B 266 N ILE B 224 SHEET 5 AA8 5 VAL B 289 MET B 290 1 O MET B 290 N VAL B 267 SHEET 1 AA9 3 ILE C 6 ASP C 7 0 SHEET 2 AA9 3 VAL C 74 ALA C 79 1 O VAL C 76 N ASP C 7 SHEET 3 AA9 3 HIS C 11 PHE C 12 1 N PHE C 12 O CYS C 78 SHEET 1 AB1 3 ILE C 6 ASP C 7 0 SHEET 2 AB1 3 VAL C 74 ALA C 79 1 O VAL C 76 N ASP C 7 SHEET 3 AB1 3 ILE C 115 VAL C 117 1 O LYS C 116 N THR C 77 SHEET 1 AB2 3 TRP C 31 GLN C 33 0 SHEET 2 AB2 3 SER C 42 MET C 44 -1 O MET C 44 N TRP C 31 SHEET 3 AB2 3 ASN C 49 PRO C 52 -1 O ARG C 51 N ILE C 43 SHEET 1 AB3 5 ILE C 144 GLY C 147 0 SHEET 2 AB3 5 ILE C 174 HIS C 177 1 O LEU C 175 N ILE C 144 SHEET 3 AB3 5 ILE C 224 PHE C 226 1 O CYS C 225 N VAL C 176 SHEET 4 AB3 5 PHE C 266 ASP C 268 1 O PHE C 266 N ILE C 224 SHEET 5 AB3 5 VAL C 289 MET C 290 1 O MET C 290 N VAL C 267 LINK NE2 HIS A 9 ZN ZN A 401 1555 1555 2.23 LINK NE2 HIS A 11 ZN ZN A 401 1555 1555 2.17 LINK NE2 HIS A 177 ZN ZN A 401 1555 1555 2.26 LINK OD1 ASP A 294 ZN ZN A 401 1555 1555 2.21 LINK ZN ZN A 401 O HOH A 629 1555 1555 2.27 LINK NE2 HIS B 9 ZN ZN B 401 1555 1555 2.23 LINK NE2 HIS B 11 ZN ZN B 401 1555 1555 2.19 LINK NE2 HIS B 177 ZN ZN B 401 1555 1555 2.30 LINK OD1 ASP B 294 ZN ZN B 401 1555 1555 2.11 LINK ZN ZN B 401 O HOH B 614 1555 1555 2.28 LINK NE2 HIS C 9 ZN ZN C 401 1555 1555 2.41 LINK NE2 HIS C 11 ZN ZN C 401 1555 1555 2.37 LINK NE2 HIS C 177 ZN ZN C 401 1555 1555 2.29 LINK OD1 ASP C 294 ZN ZN C 401 1555 1555 2.12 LINK ZN ZN C 401 O HOH C 549 1555 1555 2.59 CISPEP 1 TYR A 295 PRO A 296 0 4.77 CISPEP 2 TYR B 295 PRO B 296 0 -0.20 CISPEP 3 TYR C 295 PRO C 296 0 1.99 CRYST1 104.002 151.647 154.105 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006489 0.00000 CONECT 52 7698 CONECT 68 7698 CONECT 1368 7698 CONECT 2280 7698 CONECT 2627 7699 CONECT 2643 7699 CONECT 3945 7699 CONECT 4857 7699 CONECT 5204 7700 CONECT 5220 7700 CONECT 6487 7700 CONECT 7399 7700 CONECT 7698 52 68 1368 2280 CONECT 7698 7829 CONECT 7699 2627 2643 3945 4857 CONECT 7699 8094 CONECT 7700 5204 5220 6487 7399 CONECT 7700 8258 CONECT 7829 7698 CONECT 8094 7699 CONECT 8258 7700 MASTER 415 0 3 53 42 0 0 6 8328 3 21 78 END