HEADER METAL BINDING PROTEIN 26-MAR-24 8YTQ TITLE THE STRUCTURE OF APOCOPC FROM THIOALKALIVIBRIO PARADOXUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPC DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOALKALIVIBRIO PARADOXUS ARH 1; SOURCE 3 ORGANISM_TAXID: 713585; SOURCE 4 GENE: THITH_13340; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COPC, COPPER RESISTANCE PROTEIN C, APO-FORM, METAL BINDING PROTEIN, KEYWDS 2 COPPER CHAPERONE, THIOALKALIVIBRIO PARADOXUS EXPDTA X-RAY DIFFRACTION AUTHOR O.G.KULIKOVA,A.Y.SOLOVIEVA,L.A.VARFOLOMEEVA,N.I.DERGOUSOVA,K.M.BOYKO, AUTHOR 2 T.V.TIKHONOVA,V.O.POPOV REVDAT 1 24-APR-24 8YTQ 0 JRNL AUTH O.G.KULIKOVA,A.Y.SOLOVIEVA,L.A.VARFOLOMEEVA,N.I.DERGOUSOVA, JRNL AUTH 2 K.M.BOYKO,T.V.TIKHONOVA,V.O.POPOV JRNL TITL THE STRUCTURE OF APOCOPC FROM THIOALKALIVIBRIO PARADOXUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 45069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.67000 REMARK 3 B22 (A**2) : -13.59000 REMARK 3 B33 (A**2) : 3.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3953 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5391 ; 2.155 ; 1.625 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 6.682 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;28.926 ;21.542 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;15.082 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;23.877 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3060 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2034 ; 3.012 ; 2.002 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2533 ; 3.821 ; 2.996 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1919 ; 4.268 ; 2.369 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5707 ; 6.502 ;29.337 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 3586 0.11 0.05 REMARK 3 2 A C 3648 0.12 0.05 REMARK 3 3 A D 3569 0.12 0.05 REMARK 3 4 B C 3531 0.12 0.05 REMARK 3 5 B D 3632 0.09 0.05 REMARK 3 6 C D 3495 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 55.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.6, 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.39350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 31 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 HIS A 160 REMARK 465 HIS B 31 REMARK 465 HIS B 160 REMARK 465 SER C 158 REMARK 465 SER C 159 REMARK 465 HIS C 160 REMARK 465 HIS D 31 REMARK 465 HIS D 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 80 CD NE CZ NH1 NH2 REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 ARG B 50 CD NE CZ NH1 NH2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 470 GLN C 113 CG CD OE1 NE2 REMARK 470 ARG D 35 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 113 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 58 CD GLU B 58 OE2 -0.075 REMARK 500 SER C 138 CA SER C 138 CB -0.092 REMARK 500 GLU D 58 CD GLU D 58 OE2 -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG C 80 CG - CD - NE ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG C 80 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 GLU D 41 CB - CG - CD ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 -75.72 -81.98 REMARK 500 ARG A 50 11.35 -147.43 REMARK 500 ARG A 63 -52.99 75.39 REMARK 500 ASP B 45 -74.51 -80.18 REMARK 500 LEU B 49 128.91 -39.20 REMARK 500 ARG B 50 14.79 -146.27 REMARK 500 ARG B 63 -57.03 80.48 REMARK 500 ALA C 32 151.67 -45.05 REMARK 500 ARG C 63 -53.64 77.69 REMARK 500 ALA C 153 50.14 -103.37 REMARK 500 ASP D 45 -75.93 -80.83 REMARK 500 ARG D 63 -53.23 73.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 OD2 REMARK 620 2 HIS A 142 ND1 90.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 31 ND1 REMARK 620 2 ASP C 140 OD2 175.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 140 OD2 REMARK 620 2 HIS D 142 ND1 110.7 REMARK 620 N 1 DBREF 8YTQ A 31 160 UNP W0DSL1 W0DSL1_9GAMM 31 160 DBREF 8YTQ B 31 160 UNP W0DSL1 W0DSL1_9GAMM 31 160 DBREF 8YTQ C 31 160 UNP W0DSL1 W0DSL1_9GAMM 31 160 DBREF 8YTQ D 31 160 UNP W0DSL1 W0DSL1_9GAMM 31 160 SEQRES 1 A 130 HIS ALA HIS LEU ARG ALA ALA ASP PRO PRO GLU ALA ILE SEQRES 2 A 130 VAL ASP ALA ALA GLY LEU ARG GLU ILE ARG LEU VAL PHE SEQRES 3 A 130 SER GLU PRO VAL VAL ASP ARG PHE SER THR PHE ARG ALA SEQRES 4 A 130 PHE ARG LEU SER LEU PRO GLU ASN GLY ILE ARG ASN LEU SEQRES 5 A 130 THR GLN LEU ASN THR LEU ALA SER GLU LEU GLY VAL ASP SEQRES 6 A 130 THR GLU GLU SER ALA HIS HIS GLU VAL GLU LEU GLU SER SEQRES 7 A 130 ASP LEU SER SER GLN SER ALA GLU VAL THR LEU HIS SER SEQRES 8 A 130 ASP GLU PRO LEU PRO ALA GLY ALA TYR ALA VAL VAL TRP SEQRES 9 A 130 ARG VAL LEU SER VAL ASP GLY HIS THR THR THR GLY PHE SEQRES 10 A 130 HIS ALA PHE VAL HIS ALA GLY GLY THR ALA SER SER HIS SEQRES 1 B 130 HIS ALA HIS LEU ARG ALA ALA ASP PRO PRO GLU ALA ILE SEQRES 2 B 130 VAL ASP ALA ALA GLY LEU ARG GLU ILE ARG LEU VAL PHE SEQRES 3 B 130 SER GLU PRO VAL VAL ASP ARG PHE SER THR PHE ARG ALA SEQRES 4 B 130 PHE ARG LEU SER LEU PRO GLU ASN GLY ILE ARG ASN LEU SEQRES 5 B 130 THR GLN LEU ASN THR LEU ALA SER GLU LEU GLY VAL ASP SEQRES 6 B 130 THR GLU GLU SER ALA HIS HIS GLU VAL GLU LEU GLU SER SEQRES 7 B 130 ASP LEU SER SER GLN SER ALA GLU VAL THR LEU HIS SER SEQRES 8 B 130 ASP GLU PRO LEU PRO ALA GLY ALA TYR ALA VAL VAL TRP SEQRES 9 B 130 ARG VAL LEU SER VAL ASP GLY HIS THR THR THR GLY PHE SEQRES 10 B 130 HIS ALA PHE VAL HIS ALA GLY GLY THR ALA SER SER HIS SEQRES 1 C 130 HIS ALA HIS LEU ARG ALA ALA ASP PRO PRO GLU ALA ILE SEQRES 2 C 130 VAL ASP ALA ALA GLY LEU ARG GLU ILE ARG LEU VAL PHE SEQRES 3 C 130 SER GLU PRO VAL VAL ASP ARG PHE SER THR PHE ARG ALA SEQRES 4 C 130 PHE ARG LEU SER LEU PRO GLU ASN GLY ILE ARG ASN LEU SEQRES 5 C 130 THR GLN LEU ASN THR LEU ALA SER GLU LEU GLY VAL ASP SEQRES 6 C 130 THR GLU GLU SER ALA HIS HIS GLU VAL GLU LEU GLU SER SEQRES 7 C 130 ASP LEU SER SER GLN SER ALA GLU VAL THR LEU HIS SER SEQRES 8 C 130 ASP GLU PRO LEU PRO ALA GLY ALA TYR ALA VAL VAL TRP SEQRES 9 C 130 ARG VAL LEU SER VAL ASP GLY HIS THR THR THR GLY PHE SEQRES 10 C 130 HIS ALA PHE VAL HIS ALA GLY GLY THR ALA SER SER HIS SEQRES 1 D 130 HIS ALA HIS LEU ARG ALA ALA ASP PRO PRO GLU ALA ILE SEQRES 2 D 130 VAL ASP ALA ALA GLY LEU ARG GLU ILE ARG LEU VAL PHE SEQRES 3 D 130 SER GLU PRO VAL VAL ASP ARG PHE SER THR PHE ARG ALA SEQRES 4 D 130 PHE ARG LEU SER LEU PRO GLU ASN GLY ILE ARG ASN LEU SEQRES 5 D 130 THR GLN LEU ASN THR LEU ALA SER GLU LEU GLY VAL ASP SEQRES 6 D 130 THR GLU GLU SER ALA HIS HIS GLU VAL GLU LEU GLU SER SEQRES 7 D 130 ASP LEU SER SER GLN SER ALA GLU VAL THR LEU HIS SER SEQRES 8 D 130 ASP GLU PRO LEU PRO ALA GLY ALA TYR ALA VAL VAL TRP SEQRES 9 D 130 ARG VAL LEU SER VAL ASP GLY HIS THR THR THR GLY PHE SEQRES 10 D 130 HIS ALA PHE VAL HIS ALA GLY GLY THR ALA SER SER HIS HET CU A 201 1 HET ACT B 201 4 HET SO4 B 202 5 HET ACT C 201 4 HET CU C 202 1 HET SO4 D 201 5 HET CU D 202 1 HETNAM CU COPPER (II) ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION FORMUL 5 CU 3(CU 2+) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 SO4 2(O4 S 2-) FORMUL 12 HOH *186(H2 O) HELIX 1 AA1 ASN A 81 GLU A 91 1 11 HELIX 2 AA2 GLU A 97 HIS A 101 5 5 HELIX 3 AA3 ASN B 81 SER B 90 1 10 HELIX 4 AA4 GLU B 97 HIS B 101 5 5 HELIX 5 AA5 ASN C 81 GLU C 91 1 11 HELIX 6 AA6 GLU C 97 HIS C 101 5 5 HELIX 7 AA7 ASN D 81 SER D 90 1 10 HELIX 8 AA8 GLU D 97 HIS D 101 5 5 SHEET 1 AA1 4 LEU A 34 ASP A 38 0 SHEET 2 AA1 4 GLU A 51 PHE A 56 -1 O VAL A 55 N ALA A 36 SHEET 3 AA1 4 GLU A 116 SER A 121 -1 O LEU A 119 N ILE A 52 SHEET 4 AA1 4 LEU A 106 SER A 111 -1 N GLU A 107 O HIS A 120 SHEET 1 AA2 5 ILE A 43 VAL A 44 0 SHEET 2 AA2 5 THR A 143 HIS A 152 1 O VAL A 151 N VAL A 44 SHEET 3 AA2 5 GLY A 128 LEU A 137 -1 N GLY A 128 O HIS A 152 SHEET 4 AA2 5 THR A 66 ARG A 71 -1 N ARG A 68 O VAL A 133 SHEET 5 AA2 5 GLU A 103 VAL A 104 -1 O VAL A 104 N ALA A 69 SHEET 1 AA3 4 LEU B 34 ASP B 38 0 SHEET 2 AA3 4 GLU B 51 PHE B 56 -1 O VAL B 55 N ALA B 36 SHEET 3 AA3 4 GLU B 116 SER B 121 -1 O LEU B 119 N ILE B 52 SHEET 4 AA3 4 LEU B 106 SER B 111 -1 N GLU B 107 O HIS B 120 SHEET 1 AA4 5 ILE B 43 VAL B 44 0 SHEET 2 AA4 5 THR B 143 HIS B 152 1 O VAL B 151 N VAL B 44 SHEET 3 AA4 5 GLY B 128 LEU B 137 -1 N GLY B 128 O HIS B 152 SHEET 4 AA4 5 THR B 66 LEU B 72 -1 N ARG B 68 O VAL B 133 SHEET 5 AA4 5 GLU B 103 VAL B 104 -1 O VAL B 104 N ALA B 69 SHEET 1 AA5 4 LEU C 34 ASP C 38 0 SHEET 2 AA5 4 GLU C 51 PHE C 56 -1 O VAL C 55 N ARG C 35 SHEET 3 AA5 4 GLU C 116 SER C 121 -1 O LEU C 119 N ILE C 52 SHEET 4 AA5 4 LEU C 106 SER C 111 -1 N GLU C 107 O HIS C 120 SHEET 1 AA6 5 ILE C 43 VAL C 44 0 SHEET 2 AA6 5 THR C 143 HIS C 152 1 O VAL C 151 N VAL C 44 SHEET 3 AA6 5 GLY C 128 LEU C 137 -1 N GLY C 128 O HIS C 152 SHEET 4 AA6 5 THR C 66 LEU C 72 -1 N ARG C 68 O VAL C 133 SHEET 5 AA6 5 GLU C 103 VAL C 104 -1 O VAL C 104 N ALA C 69 SHEET 1 AA7 4 LEU D 34 ASP D 38 0 SHEET 2 AA7 4 GLU D 51 PHE D 56 -1 O VAL D 55 N ARG D 35 SHEET 3 AA7 4 GLU D 116 HIS D 120 -1 O LEU D 119 N ILE D 52 SHEET 4 AA7 4 GLU D 107 SER D 111 -1 N GLU D 107 O HIS D 120 SHEET 1 AA8 5 ILE D 43 VAL D 44 0 SHEET 2 AA8 5 THR D 143 HIS D 152 1 O VAL D 151 N VAL D 44 SHEET 3 AA8 5 GLY D 128 LEU D 137 -1 N GLY D 128 O HIS D 152 SHEET 4 AA8 5 THR D 66 LEU D 72 -1 N ARG D 68 O VAL D 133 SHEET 5 AA8 5 GLU D 103 VAL D 104 -1 O VAL D 104 N ALA D 69 LINK OD2 ASP A 140 CU CU A 201 1555 1555 2.03 LINK ND1 HIS A 142 CU CU A 201 1555 1555 2.02 LINK ND1 HIS C 31 CU CU C 202 1555 1555 1.99 LINK OD2 ASP C 140 CU CU C 202 1555 1555 1.99 LINK OD2 ASP D 140 CU CU D 202 1555 1555 2.00 LINK ND1 HIS D 142 CU CU D 202 1555 1555 2.00 CISPEP 1 ASP A 38 PRO A 39 0 3.67 CISPEP 2 ASP B 38 PRO B 39 0 2.06 CISPEP 3 ASP C 38 PRO C 39 0 1.65 CISPEP 4 ASP D 38 PRO D 39 0 3.03 CRYST1 28.084 144.787 55.350 90.00 90.07 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035607 0.000000 0.000044 0.00000 SCALE2 0.000000 0.006907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018067 0.00000