HEADER HYDROLASE 26-MAR-24 8YTY TITLE THE M12+P185V VARIANT OF KUBU-PETASE FROM KUTZNERIA BURIRAMENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIENELACTONE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECOMBINANT KUBU-P-M12+P185V VARIANT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KUTZNERIA BURIRAMENSIS; SOURCE 3 ORGANISM_TAXID: 1045776; SOURCE 4 GENE: BCF44_11928; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: -T1R KEYWDS PET HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,H.SEO,H.HONG,K.-J.KIM REVDAT 1 15-JAN-25 8YTY 0 JRNL AUTH H.SEO,H.HONG,J.PARK,S.H.LEE,D.KI,A.RYU,H.Y.SAGONG,K.J.KIM JRNL TITL LANDSCAPE PROFILING OF PET DEPOLYMERASES USING A NATURAL JRNL TITL 2 SEQUENCE CLUSTER FRAMEWORK. JRNL REF SCIENCE V. 387 P5637 2025 JRNL REFN ESSN 1095-9203 JRNL PMID 39745946 JRNL DOI 10.1126/SCIENCE.ADP5637 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 74333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3990 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1967 ; 0.014 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 1777 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2711 ; 1.838 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4091 ; 0.647 ; 1.559 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 6.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ; 9.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;11.722 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2400 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 476 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 0.998 ; 0.837 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1052 ; 0.988 ; 0.837 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1324 ; 1.422 ; 1.510 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1325 ; 1.423 ; 1.512 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 915 ; 1.769 ; 0.967 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 914 ; 1.757 ; 0.962 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1386 ; 2.495 ; 1.714 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2354 ; 5.094 ;12.690 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2229 ; 4.357 ; 9.270 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8YTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1300046372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74333 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 32.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM ACETATE TRIBASIC PH REMARK 280 4.6, TACSIMATE PH 4.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.48150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.82250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.86500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.48150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.82250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.86500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.48150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.82250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.86500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.48150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.82250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 37 REMARK 465 ALA A 38 REMARK 465 ASP A 39 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 217 O HOH A 301 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 313 O HOH A 313 2555 1.38 REMARK 500 O HOH A 317 O HOH A 505 8544 1.90 REMARK 500 O ASN A 65 CD2 LEU A 289 6445 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 215 CA - N - CD ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO A 215 CA - N - CD ANGL. DEV. = -10.1 DEGREES REMARK 500 ALA A 278 N - CA - CB ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 162 -123.73 63.86 REMARK 500 HIS A 218 -83.68 -126.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 128 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 65 -22.24 REMARK 500 SER A 264 -17.48 REMARK 500 GLY A 274 14.30 REMARK 500 GLY A 274 -12.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 666 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A 667 DISTANCE = 9.91 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8YTU RELATED DB: PDB REMARK 900 RELATED ID: 8YTV RELATED DB: PDB REMARK 900 RELATED ID: 8YTW RELATED DB: PDB DBREF1 8YTY A 38 288 UNP A0A3E0H050_9PSEU DBREF2 8YTY A A0A3E0H050 38 288 SEQADV 8YTY MET A 37 UNP A0A3E0H05 INITIATING METHIONINE SEQADV 8YTY ARG A 95 UNP A0A3E0H05 THR 95 VARIANT SEQADV 8YTY ASN A 119 UNP A0A3E0H05 THR 119 VARIANT SEQADV 8YTY SER A 127 UNP A0A3E0H05 GLN 127 VARIANT SEQADV 8YTY GLN A 131 UNP A0A3E0H05 GLU 131 VARIANT SEQADV 8YTY CYS A 173 UNP A0A3E0H05 ALA 173 VARIANT SEQADV 8YTY ILE A 184 UNP A0A3E0H05 VAL 184 VARIANT SEQADV 8YTY VAL A 185 UNP A0A3E0H05 PRO 185 VARIANT SEQADV 8YTY HIS A 190 UNP A0A3E0H05 ASP 190 VARIANT SEQADV 8YTY CYS A 197 UNP A0A3E0H05 LYS 197 VARIANT SEQADV 8YTY CYS A 236 UNP A0A3E0H05 ALA 236 VARIANT SEQADV 8YTY SER A 239 UNP A0A3E0H05 ASP 239 VARIANT SEQADV 8YTY SER A 279 UNP A0A3E0H05 ALA 279 VARIANT SEQADV 8YTY CYS A 281 UNP A0A3E0H05 SER 281 VARIANT SEQADV 8YTY LEU A 289 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY GLU A 290 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY HIS A 291 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY HIS A 292 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY HIS A 293 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY HIS A 294 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY HIS A 295 UNP A0A3E0H05 EXPRESSION TAG SEQADV 8YTY HIS A 296 UNP A0A3E0H05 EXPRESSION TAG SEQRES 1 A 260 MET ALA ASP GLN VAL GLY GLN ALA PRO THR ALA ALA ASN SEQRES 2 A 260 ILE THR GLY ASP GLY SER PHE ALA THR ALA SER ALA PRO SEQRES 3 A 260 ILE THR ASN GLN THR GLY PHE GLY GLY GLY THR VAL TYR SEQRES 4 A 260 TYR PRO THR ALA ALA GLY THR TYR PRO VAL VAL ALA VAL SEQRES 5 A 260 VAL PRO GLY PHE VAL SER ARG TRP SER GLN ILE SER TRP SEQRES 6 A 260 LEU GLY PRO ARG VAL ALA SER TRP GLY PHE VAL VAL VAL SEQRES 7 A 260 GLY ALA ASP THR ASN SER GLY PHE ASP SER PRO SER SER SEQRES 8 A 260 ARG ALA ASP GLN LEU LEU ALA ALA LEU ASN TRP ALA VAL SEQRES 9 A 260 ASN SER ALA PRO ALA ALA VAL ARG GLY LYS VAL ASP GLY SEQRES 10 A 260 THR ARG ARG GLY VAL ALA GLY TRP SER MET GLY GLY GLY SEQRES 11 A 260 GLY THR LEU GLU ALA LEU CYS LYS ASP THR THR GLY THR SEQRES 12 A 260 VAL LYS ALA GLY ILE VAL LEU ALA PRO TRP HIS ILE GLY SEQRES 13 A 260 GLN ASP PHE SER CYS VAL THR LYS PRO VAL PHE ILE VAL SEQRES 14 A 260 GLY ALA GLN ASN ASP THR ILE ALA PRO PRO ALA GLN HIS SEQRES 15 A 260 ALA VAL PRO PHE TYR ASN ALA ALA ALA GLY PRO LYS SER SEQRES 16 A 260 TYR LEU GLU LEU CYS GLY ALA SER HIS PHE PHE PRO THR SEQRES 17 A 260 THR ALA ASN PRO THR VAL SER ARG ALA MET VAL SER TRP SEQRES 18 A 260 LEU LYS ARG PHE VAL SER SER ASP ASP ARG PHE THR PRO SEQRES 19 A 260 PHE THR CYS GLY PHE ALA GLY ALA SER VAL CYS ALA PHE SEQRES 20 A 260 ARG SER THR ALA CYS LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *367(H2 O) HELIX 1 AA1 ARG A 95 SER A 100 5 6 HELIX 2 AA2 TRP A 101 SER A 108 1 8 HELIX 3 AA3 SER A 124 SER A 142 1 19 HELIX 4 AA4 PRO A 144 GLY A 149 1 6 HELIX 5 AA5 SER A 162 ASP A 175 1 14 HELIX 6 AA6 HIS A 218 ALA A 226 1 9 HELIX 7 AA7 PHE A 241 THR A 245 5 5 HELIX 8 AA8 ASN A 247 VAL A 262 1 16 HELIX 9 AA9 ASP A 265 CYS A 273 5 9 SHEET 1 AA1 9 THR A 58 PRO A 62 0 SHEET 2 AA1 9 GLY A 72 PRO A 77 -1 O VAL A 74 N ALA A 61 SHEET 3 AA1 9 VAL A 112 ALA A 116 -1 O GLY A 115 N THR A 73 SHEET 4 AA1 9 TYR A 83 VAL A 89 1 N VAL A 86 O VAL A 114 SHEET 5 AA1 9 VAL A 151 TRP A 161 1 O ASP A 152 N TYR A 83 SHEET 6 AA1 9 VAL A 180 LEU A 186 1 O LYS A 181 N ARG A 156 SHEET 7 AA1 9 VAL A 202 ALA A 207 1 O VAL A 205 N VAL A 185 SHEET 8 AA1 9 LYS A 230 LEU A 235 1 O LEU A 235 N GLY A 206 SHEET 9 AA1 9 VAL A 280 SER A 285 -1 O CYS A 281 N GLU A 234 SSBOND 1 CYS A 173 CYS A 197 1555 1555 2.02 SSBOND 2 CYS A 236 CYS A 281 1555 1555 2.02 SSBOND 3 CYS A 273 CYS A 288 1555 1555 2.03 CRYST1 64.963 81.645 83.730 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011943 0.00000