data_8YV9 # _entry.id 8YV9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YV9 pdb_00008yv9 10.2210/pdb8yv9/pdb WWPDB D_1300046438 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YV9 _pdbx_database_status.recvd_initial_deposition_date 2024-03-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email lifudong@ustc.edu.cn _pdbx_contact_author.name_first Fudong _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9434-3762 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, F.D.' 1 ? 'Li, M.L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 10355 _citation.page_last 10355 _citation.title 'Structural basis for C. elegans pairing center DNA binding specificity by the ZIM/HIM-8 family proteins.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-54548-9 _citation.pdbx_database_id_PubMed 39609407 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Zhu, C.' 2 0000-0003-4930-2192 primary 'Xu, Z.' 3 0000-0002-5374-4121 primary 'Xu, M.' 4 ? primary 'Kuang, Y.' 5 ? primary 'Hou, X.' 6 ? primary 'Huang, X.' 7 0009-0006-1077-1564 primary 'Lv, M.' 8 ? primary 'Liu, Y.' 9 ? primary 'Zhang, Y.' 10 ? primary 'Xu, Z.' 11 ? primary 'Han, X.' 12 ? primary 'Wang, S.' 13 ? primary 'Shi, Y.' 14 0000-0002-1348-4759 primary 'Guang, S.' 15 0000-0001-7700-9634 primary 'Li, F.' 16 0000-0002-9434-3762 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C2H2-type domain-containing protein' 16724.613 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*GP*GP*TP*CP*AP*GP*TP*GP*CP*A)-3') ; 3693.414 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*GP*CP*AP*CP*TP*GP*AP*CP*CP*AP*A)-3') ; 3631.394 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 129 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPHMMKSPDSKNDEINKDEIHNIQCHFPNCNRAIAWKRKYGKLRLIDHALVHCDKNFLKCKKCKHTCHTIRQMRYHYRIF HSTSKMEGFGVSGLPTKNKGFQKIMNACFADQLVEMNKRKNPPKSQNGSRRSRVKSKSKRSGI ; ;GPHMMKSPDSKNDEINKDEIHNIQCHFPNCNRAIAWKRKYGKLRLIDHALVHCDKNFLKCKKCKHTCHTIRQMRYHYRIF HSTSKMEGFGVSGLPTKNKGFQKIMNACFADQLVEMNKRKNPPKSQNGSRRSRVKSKSKRSGI ; A ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DT)(DC)(DA)(DG)(DT)(DG)(DC)(DA)' TTGGTCAGTGCA B ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DA)(DC)(DT)(DG)(DA)(DC)(DC)(DA)(DA)' TGCACTGACCAA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 MET n 1 6 LYS n 1 7 SER n 1 8 PRO n 1 9 ASP n 1 10 SER n 1 11 LYS n 1 12 ASN n 1 13 ASP n 1 14 GLU n 1 15 ILE n 1 16 ASN n 1 17 LYS n 1 18 ASP n 1 19 GLU n 1 20 ILE n 1 21 HIS n 1 22 ASN n 1 23 ILE n 1 24 GLN n 1 25 CYS n 1 26 HIS n 1 27 PHE n 1 28 PRO n 1 29 ASN n 1 30 CYS n 1 31 ASN n 1 32 ARG n 1 33 ALA n 1 34 ILE n 1 35 ALA n 1 36 TRP n 1 37 LYS n 1 38 ARG n 1 39 LYS n 1 40 TYR n 1 41 GLY n 1 42 LYS n 1 43 LEU n 1 44 ARG n 1 45 LEU n 1 46 ILE n 1 47 ASP n 1 48 HIS n 1 49 ALA n 1 50 LEU n 1 51 VAL n 1 52 HIS n 1 53 CYS n 1 54 ASP n 1 55 LYS n 1 56 ASN n 1 57 PHE n 1 58 LEU n 1 59 LYS n 1 60 CYS n 1 61 LYS n 1 62 LYS n 1 63 CYS n 1 64 LYS n 1 65 HIS n 1 66 THR n 1 67 CYS n 1 68 HIS n 1 69 THR n 1 70 ILE n 1 71 ARG n 1 72 GLN n 1 73 MET n 1 74 ARG n 1 75 TYR n 1 76 HIS n 1 77 TYR n 1 78 ARG n 1 79 ILE n 1 80 PHE n 1 81 HIS n 1 82 SER n 1 83 THR n 1 84 SER n 1 85 LYS n 1 86 MET n 1 87 GLU n 1 88 GLY n 1 89 PHE n 1 90 GLY n 1 91 VAL n 1 92 SER n 1 93 GLY n 1 94 LEU n 1 95 PRO n 1 96 THR n 1 97 LYS n 1 98 ASN n 1 99 LYS n 1 100 GLY n 1 101 PHE n 1 102 GLN n 1 103 LYS n 1 104 ILE n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 CYS n 1 109 PHE n 1 110 ALA n 1 111 ASP n 1 112 GLN n 1 113 LEU n 1 114 VAL n 1 115 GLU n 1 116 MET n 1 117 ASN n 1 118 LYS n 1 119 ARG n 1 120 LYS n 1 121 ASN n 1 122 PRO n 1 123 PRO n 1 124 LYS n 1 125 SER n 1 126 GLN n 1 127 ASN n 1 128 GLY n 1 129 SER n 1 130 ARG n 1 131 ARG n 1 132 SER n 1 133 ARG n 1 134 VAL n 1 135 LYS n 1 136 SER n 1 137 LYS n 1 138 SER n 1 139 LYS n 1 140 ARG n 1 141 SER n 1 142 GLY n 1 143 ILE n 2 1 DT n 2 2 DT n 2 3 DG n 2 4 DG n 2 5 DT n 2 6 DC n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DC n 2 12 DA n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 DT n 3 7 DG n 3 8 DA n 3 9 DC n 3 10 DC n 3 11 DA n 3 12 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 143 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'him-8, CELE_T07G12.12, T07G12.12' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'Caenorhabditis elegans' ? 6239 ? 3 1 sample 1 12 'Caenorhabditis elegans' ? 6239 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 219 ? ? ? A . n A 1 2 PRO 2 220 ? ? ? A . n A 1 3 HIS 3 221 ? ? ? A . n A 1 4 MET 4 222 ? ? ? A . n A 1 5 MET 5 223 ? ? ? A . n A 1 6 LYS 6 224 ? ? ? A . n A 1 7 SER 7 225 ? ? ? A . n A 1 8 PRO 8 226 ? ? ? A . n A 1 9 ASP 9 227 ? ? ? A . n A 1 10 SER 10 228 ? ? ? A . n A 1 11 LYS 11 229 ? ? ? A . n A 1 12 ASN 12 230 ? ? ? A . n A 1 13 ASP 13 231 ? ? ? A . n A 1 14 GLU 14 232 ? ? ? A . n A 1 15 ILE 15 233 ? ? ? A . n A 1 16 ASN 16 234 ? ? ? A . n A 1 17 LYS 17 235 ? ? ? A . n A 1 18 ASP 18 236 236 ASP ASP A . n A 1 19 GLU 19 237 237 GLU GLU A . n A 1 20 ILE 20 238 238 ILE ILE A . n A 1 21 HIS 21 239 239 HIS HIS A . n A 1 22 ASN 22 240 240 ASN ASN A . n A 1 23 ILE 23 241 241 ILE ILE A . n A 1 24 GLN 24 242 242 GLN GLN A . n A 1 25 CYS 25 243 243 CYS CYS A . n A 1 26 HIS 26 244 244 HIS HIS A . n A 1 27 PHE 27 245 245 PHE PHE A . n A 1 28 PRO 28 246 246 PRO PRO A . n A 1 29 ASN 29 247 247 ASN ASN A . n A 1 30 CYS 30 248 248 CYS CYS A . n A 1 31 ASN 31 249 249 ASN ASN A . n A 1 32 ARG 32 250 250 ARG ARG A . n A 1 33 ALA 33 251 251 ALA ALA A . n A 1 34 ILE 34 252 252 ILE ILE A . n A 1 35 ALA 35 253 253 ALA ALA A . n A 1 36 TRP 36 254 254 TRP TRP A . n A 1 37 LYS 37 255 255 LYS LYS A . n A 1 38 ARG 38 256 256 ARG ARG A . n A 1 39 LYS 39 257 257 LYS LYS A . n A 1 40 TYR 40 258 258 TYR TYR A . n A 1 41 GLY 41 259 259 GLY GLY A . n A 1 42 LYS 42 260 260 LYS LYS A . n A 1 43 LEU 43 261 261 LEU LEU A . n A 1 44 ARG 44 262 262 ARG ARG A . n A 1 45 LEU 45 263 263 LEU LEU A . n A 1 46 ILE 46 264 264 ILE ILE A . n A 1 47 ASP 47 265 265 ASP ASP A . n A 1 48 HIS 48 266 266 HIS HIS A . n A 1 49 ALA 49 267 267 ALA ALA A . n A 1 50 LEU 50 268 268 LEU LEU A . n A 1 51 VAL 51 269 269 VAL VAL A . n A 1 52 HIS 52 270 270 HIS HIS A . n A 1 53 CYS 53 271 271 CYS CYS A . n A 1 54 ASP 54 272 272 ASP ASP A . n A 1 55 LYS 55 273 273 LYS LYS A . n A 1 56 ASN 56 274 274 ASN ASN A . n A 1 57 PHE 57 275 275 PHE PHE A . n A 1 58 LEU 58 276 276 LEU LEU A . n A 1 59 LYS 59 277 277 LYS LYS A . n A 1 60 CYS 60 278 278 CYS CYS A . n A 1 61 LYS 61 279 279 LYS LYS A . n A 1 62 LYS 62 280 280 LYS LYS A . n A 1 63 CYS 63 281 281 CYS CYS A . n A 1 64 LYS 64 282 282 LYS LYS A . n A 1 65 HIS 65 283 283 HIS HIS A . n A 1 66 THR 66 284 284 THR THR A . n A 1 67 CYS 67 285 285 CYS CYS A . n A 1 68 HIS 68 286 286 HIS HIS A . n A 1 69 THR 69 287 287 THR THR A . n A 1 70 ILE 70 288 288 ILE ILE A . n A 1 71 ARG 71 289 289 ARG ARG A . n A 1 72 GLN 72 290 290 GLN GLN A . n A 1 73 MET 73 291 291 MET MET A . n A 1 74 ARG 74 292 292 ARG ARG A . n A 1 75 TYR 75 293 293 TYR TYR A . n A 1 76 HIS 76 294 294 HIS HIS A . n A 1 77 TYR 77 295 295 TYR TYR A . n A 1 78 ARG 78 296 296 ARG ARG A . n A 1 79 ILE 79 297 297 ILE ILE A . n A 1 80 PHE 80 298 298 PHE PHE A . n A 1 81 HIS 81 299 299 HIS HIS A . n A 1 82 SER 82 300 300 SER SER A . n A 1 83 THR 83 301 301 THR THR A . n A 1 84 SER 84 302 302 SER SER A . n A 1 85 LYS 85 303 303 LYS LYS A . n A 1 86 MET 86 304 304 MET MET A . n A 1 87 GLU 87 305 305 GLU GLU A . n A 1 88 GLY 88 306 306 GLY GLY A . n A 1 89 PHE 89 307 307 PHE PHE A . n A 1 90 GLY 90 308 308 GLY GLY A . n A 1 91 VAL 91 309 309 VAL VAL A . n A 1 92 SER 92 310 310 SER SER A . n A 1 93 GLY 93 311 311 GLY GLY A . n A 1 94 LEU 94 312 312 LEU LEU A . n A 1 95 PRO 95 313 313 PRO PRO A . n A 1 96 THR 96 314 314 THR THR A . n A 1 97 LYS 97 315 315 LYS LYS A . n A 1 98 ASN 98 316 316 ASN ASN A . n A 1 99 LYS 99 317 317 LYS LYS A . n A 1 100 GLY 100 318 318 GLY GLY A . n A 1 101 PHE 101 319 319 PHE PHE A . n A 1 102 GLN 102 320 320 GLN GLN A . n A 1 103 LYS 103 321 321 LYS LYS A . n A 1 104 ILE 104 322 322 ILE ILE A . n A 1 105 MET 105 323 323 MET MET A . n A 1 106 ASN 106 324 324 ASN ASN A . n A 1 107 ALA 107 325 325 ALA ALA A . n A 1 108 CYS 108 326 326 CYS CYS A . n A 1 109 PHE 109 327 327 PHE PHE A . n A 1 110 ALA 110 328 328 ALA ALA A . n A 1 111 ASP 111 329 329 ASP ASP A . n A 1 112 GLN 112 330 330 GLN GLN A . n A 1 113 LEU 113 331 331 LEU LEU A . n A 1 114 VAL 114 332 332 VAL VAL A . n A 1 115 GLU 115 333 333 GLU GLU A . n A 1 116 MET 116 334 334 MET MET A . n A 1 117 ASN 117 335 335 ASN ASN A . n A 1 118 LYS 118 336 ? ? ? A . n A 1 119 ARG 119 337 ? ? ? A . n A 1 120 LYS 120 338 ? ? ? A . n A 1 121 ASN 121 339 ? ? ? A . n A 1 122 PRO 122 340 ? ? ? A . n A 1 123 PRO 123 341 ? ? ? A . n A 1 124 LYS 124 342 ? ? ? A . n A 1 125 SER 125 343 ? ? ? A . n A 1 126 GLN 126 344 ? ? ? A . n A 1 127 ASN 127 345 ? ? ? A . n A 1 128 GLY 128 346 ? ? ? A . n A 1 129 SER 129 347 ? ? ? A . n A 1 130 ARG 130 348 ? ? ? A . n A 1 131 ARG 131 349 ? ? ? A . n A 1 132 SER 132 350 ? ? ? A . n A 1 133 ARG 133 351 ? ? ? A . n A 1 134 VAL 134 352 ? ? ? A . n A 1 135 LYS 135 353 ? ? ? A . n A 1 136 SER 136 354 ? ? ? A . n A 1 137 LYS 137 355 ? ? ? A . n A 1 138 SER 138 356 ? ? ? A . n A 1 139 LYS 139 357 ? ? ? A . n A 1 140 ARG 140 358 ? ? ? A . n A 1 141 SER 141 359 ? ? ? A . n A 1 142 GLY 142 360 ? ? ? A . n A 1 143 ILE 143 361 ? ? ? A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DA 12 12 12 DA DA B . n C 3 1 DT 1 1 1 DT DT C . n C 3 2 DG 2 2 2 DG DG C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DA 4 4 4 DA DA C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DG 7 7 7 DG DG C . n C 3 8 DA 8 8 8 DA DA C . n C 3 9 DC 9 9 9 DC DC C . n C 3 10 DC 10 10 10 DC DC C . n C 3 11 DA 11 11 11 DA DA C . n C 3 12 DA 12 12 12 DA DA C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ZN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ZN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 401 1 ZN ZN A . E 4 ZN 1 402 2 ZN ZN A . F 5 HOH 1 501 76 HOH HOH A . F 5 HOH 2 502 58 HOH HOH A . F 5 HOH 3 503 80 HOH HOH A . F 5 HOH 4 504 124 HOH HOH A . F 5 HOH 5 505 64 HOH HOH A . F 5 HOH 6 506 43 HOH HOH A . F 5 HOH 7 507 19 HOH HOH A . F 5 HOH 8 508 128 HOH HOH A . F 5 HOH 9 509 103 HOH HOH A . F 5 HOH 10 510 34 HOH HOH A . F 5 HOH 11 511 130 HOH HOH A . F 5 HOH 12 512 59 HOH HOH A . F 5 HOH 13 513 120 HOH HOH A . F 5 HOH 14 514 72 HOH HOH A . F 5 HOH 15 515 13 HOH HOH A . F 5 HOH 16 516 25 HOH HOH A . F 5 HOH 17 517 29 HOH HOH A . F 5 HOH 18 518 12 HOH HOH A . F 5 HOH 19 519 105 HOH HOH A . F 5 HOH 20 520 28 HOH HOH A . F 5 HOH 21 521 24 HOH HOH A . F 5 HOH 22 522 63 HOH HOH A . F 5 HOH 23 523 15 HOH HOH A . F 5 HOH 24 524 67 HOH HOH A . F 5 HOH 25 525 82 HOH HOH A . F 5 HOH 26 526 131 HOH HOH A . F 5 HOH 27 527 38 HOH HOH A . F 5 HOH 28 528 22 HOH HOH A . F 5 HOH 29 529 60 HOH HOH A . F 5 HOH 30 530 104 HOH HOH A . F 5 HOH 31 531 35 HOH HOH A . F 5 HOH 32 532 77 HOH HOH A . F 5 HOH 33 533 78 HOH HOH A . F 5 HOH 34 534 49 HOH HOH A . F 5 HOH 35 535 133 HOH HOH A . F 5 HOH 36 536 115 HOH HOH A . F 5 HOH 37 537 18 HOH HOH A . F 5 HOH 38 538 117 HOH HOH A . F 5 HOH 39 539 52 HOH HOH A . F 5 HOH 40 540 47 HOH HOH A . F 5 HOH 41 541 99 HOH HOH A . F 5 HOH 42 542 108 HOH HOH A . F 5 HOH 43 543 134 HOH HOH A . F 5 HOH 44 544 2 HOH HOH A . F 5 HOH 45 545 101 HOH HOH A . F 5 HOH 46 546 44 HOH HOH A . F 5 HOH 47 547 87 HOH HOH A . F 5 HOH 48 548 112 HOH HOH A . F 5 HOH 49 549 8 HOH HOH A . F 5 HOH 50 550 75 HOH HOH A . F 5 HOH 51 551 7 HOH HOH A . F 5 HOH 52 552 121 HOH HOH A . F 5 HOH 53 553 14 HOH HOH A . F 5 HOH 54 554 39 HOH HOH A . F 5 HOH 55 555 54 HOH HOH A . F 5 HOH 56 556 113 HOH HOH A . F 5 HOH 57 557 48 HOH HOH A . F 5 HOH 58 558 33 HOH HOH A . F 5 HOH 59 559 90 HOH HOH A . F 5 HOH 60 560 70 HOH HOH A . F 5 HOH 61 561 20 HOH HOH A . F 5 HOH 62 562 57 HOH HOH A . F 5 HOH 63 563 94 HOH HOH A . F 5 HOH 64 564 36 HOH HOH A . F 5 HOH 65 565 88 HOH HOH A . F 5 HOH 66 566 68 HOH HOH A . F 5 HOH 67 567 51 HOH HOH A . F 5 HOH 68 568 92 HOH HOH A . F 5 HOH 69 569 46 HOH HOH A . F 5 HOH 70 570 138 HOH HOH A . F 5 HOH 71 571 123 HOH HOH A . F 5 HOH 72 572 136 HOH HOH A . F 5 HOH 73 573 91 HOH HOH A . F 5 HOH 74 574 137 HOH HOH A . F 5 HOH 75 575 100 HOH HOH A . F 5 HOH 76 576 32 HOH HOH A . G 5 HOH 1 101 21 HOH HOH B . G 5 HOH 2 102 23 HOH HOH B . G 5 HOH 3 103 135 HOH HOH B . G 5 HOH 4 104 40 HOH HOH B . G 5 HOH 5 105 111 HOH HOH B . G 5 HOH 6 106 96 HOH HOH B . G 5 HOH 7 107 1 HOH HOH B . G 5 HOH 8 108 62 HOH HOH B . G 5 HOH 9 109 119 HOH HOH B . G 5 HOH 10 110 41 HOH HOH B . G 5 HOH 11 111 74 HOH HOH B . G 5 HOH 12 112 61 HOH HOH B . G 5 HOH 13 113 93 HOH HOH B . G 5 HOH 14 114 132 HOH HOH B . G 5 HOH 15 115 126 HOH HOH B . G 5 HOH 16 116 98 HOH HOH B . G 5 HOH 17 117 129 HOH HOH B . G 5 HOH 18 118 17 HOH HOH B . G 5 HOH 19 119 116 HOH HOH B . G 5 HOH 20 120 9 HOH HOH B . G 5 HOH 21 121 26 HOH HOH B . G 5 HOH 22 122 95 HOH HOH B . G 5 HOH 23 123 81 HOH HOH B . G 5 HOH 24 124 4 HOH HOH B . G 5 HOH 25 125 127 HOH HOH B . G 5 HOH 26 126 139 HOH HOH B . G 5 HOH 27 127 114 HOH HOH B . H 5 HOH 1 101 118 HOH HOH C . H 5 HOH 2 102 79 HOH HOH C . H 5 HOH 3 103 66 HOH HOH C . H 5 HOH 4 104 42 HOH HOH C . H 5 HOH 5 105 53 HOH HOH C . H 5 HOH 6 106 65 HOH HOH C . H 5 HOH 7 107 85 HOH HOH C . H 5 HOH 8 108 5 HOH HOH C . H 5 HOH 9 109 45 HOH HOH C . H 5 HOH 10 110 73 HOH HOH C . H 5 HOH 11 111 10 HOH HOH C . H 5 HOH 12 112 56 HOH HOH C . H 5 HOH 13 113 102 HOH HOH C . H 5 HOH 14 114 16 HOH HOH C . H 5 HOH 15 115 97 HOH HOH C . H 5 HOH 16 116 110 HOH HOH C . H 5 HOH 17 117 3 HOH HOH C . H 5 HOH 18 118 55 HOH HOH C . H 5 HOH 19 119 31 HOH HOH C . H 5 HOH 20 120 27 HOH HOH C . H 5 HOH 21 121 6 HOH HOH C . H 5 HOH 22 122 107 HOH HOH C . H 5 HOH 23 123 11 HOH HOH C . H 5 HOH 24 124 125 HOH HOH C . H 5 HOH 25 125 89 HOH HOH C . H 5 HOH 26 126 122 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 236 ? CG ? A ASP 18 CG 2 1 Y 1 A ASP 236 ? OD1 ? A ASP 18 OD1 3 1 Y 1 A ASP 236 ? OD2 ? A ASP 18 OD2 4 1 Y 1 A GLU 237 ? CG ? A GLU 19 CG 5 1 Y 1 A GLU 237 ? CD ? A GLU 19 CD 6 1 Y 1 A GLU 237 ? OE1 ? A GLU 19 OE1 7 1 Y 1 A GLU 237 ? OE2 ? A GLU 19 OE2 8 1 Y 1 A GLU 333 ? CG ? A GLU 115 CG 9 1 Y 1 A GLU 333 ? CD ? A GLU 115 CD 10 1 Y 1 A GLU 333 ? OE1 ? A GLU 115 OE1 11 1 Y 1 A GLU 333 ? OE2 ? A GLU 115 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 109.07 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8YV9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.021 _cell.length_a_esd ? _cell.length_b 54.296 _cell.length_b_esd ? _cell.length_c 76.770 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YV9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% w/v PEG 3350, 0.1M Bis-Tris pH 5.5, and 0.1 M Ammonium Sulphate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-11-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8YV9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.14 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12651 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.803 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.066 _reflns.pdbx_Rpim_I_all 0.033 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 50982 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star 1.000 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.14 2.18 ? ? ? ? ? ? 531 ? ? ? ? ? ? ? ? ? ? ? 2.7 0.926 ? ? 0.397 0.220 ? 1 1 0.894 0.972 ? 84.3 ? 0.328 ? ? ? ? ? ? ? ? ? 2.18 2.22 ? ? ? ? ? ? 622 ? ? ? ? ? ? ? ? ? ? ? 3.1 0.874 ? ? 0.357 0.193 ? 2 1 0.931 0.982 ? 97.2 ? 0.298 ? ? ? ? ? ? ? ? ? 2.22 2.26 ? ? ? ? ? ? 624 ? ? ? ? ? ? ? ? ? ? ? 3.3 1.034 ? ? 0.325 0.171 ? 3 1 0.915 0.978 ? 98.1 ? 0.274 ? ? ? ? ? ? ? ? ? 2.26 2.31 ? ? ? ? ? ? 598 ? ? ? ? ? ? ? ? ? ? ? 3.5 0.942 ? ? 0.287 0.147 ? 4 1 0.935 0.983 ? 98.7 ? 0.245 ? ? ? ? ? ? ? ? ? 2.31 2.36 ? ? ? ? ? ? 668 ? ? ? ? ? ? ? ? ? ? ? 3.8 0.926 ? ? 0.268 0.133 ? 5 1 0.954 0.988 ? 97.9 ? 0.232 ? ? ? ? ? ? ? ? ? 2.36 2.41 ? ? ? ? ? ? 605 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.965 ? ? 0.236 0.113 ? 6 1 0.970 0.992 ? 99.7 ? 0.207 ? ? ? ? ? ? ? ? ? 2.41 2.47 ? ? ? ? ? ? 649 ? ? ? ? ? ? ? ? ? ? ? 4.4 0.888 ? ? 0.224 0.105 ? 7 1 0.969 0.992 ? 99.7 ? 0.197 ? ? ? ? ? ? ? ? ? 2.47 2.54 ? ? ? ? ? ? 632 ? ? ? ? ? ? ? ? ? ? ? 4.4 0.893 ? ? 0.191 0.089 ? 8 1 0.977 0.994 ? 100.0 ? 0.168 ? ? ? ? ? ? ? ? ? 2.54 2.61 ? ? ? ? ? ? 625 ? ? ? ? ? ? ? ? ? ? ? 4.3 0.952 ? ? 0.177 0.083 ? 9 1 0.978 0.995 ? 100.0 ? 0.156 ? ? ? ? ? ? ? ? ? 2.61 2.70 ? ? ? ? ? ? 666 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.961 ? ? 0.141 0.068 ? 10 1 0.984 0.996 ? 100.0 ? 0.123 ? ? ? ? ? ? ? ? ? 2.70 2.79 ? ? ? ? ? ? 617 ? ? ? ? ? ? ? ? ? ? ? 4.4 0.933 ? ? 0.120 0.056 ? 11 1 0.986 0.996 ? 99.8 ? 0.106 ? ? ? ? ? ? ? ? ? 2.79 2.90 ? ? ? ? ? ? 643 ? ? ? ? ? ? ? ? ? ? ? 4.4 0.909 ? ? 0.109 0.051 ? 12 1 0.986 0.996 ? 100.0 ? 0.096 ? ? ? ? ? ? ? ? ? 2.90 3.04 ? ? ? ? ? ? 651 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.816 ? ? 0.086 0.042 ? 13 1 0.992 0.998 ? 100.0 ? 0.075 ? ? ? ? ? ? ? ? ? 3.04 3.20 ? ? ? ? ? ? 627 ? ? ? ? ? ? ? ? ? ? ? 4.1 0.828 ? ? 0.074 0.036 ? 14 1 0.993 0.998 ? 99.1 ? 0.064 ? ? ? ? ? ? ? ? ? 3.20 3.40 ? ? ? ? ? ? 648 ? ? ? ? ? ? ? ? ? ? ? 4.3 0.768 ? ? 0.065 0.033 ? 15 1 0.992 0.998 ? 99.7 ? 0.055 ? ? ? ? ? ? ? ? ? 3.40 3.66 ? ? ? ? ? ? 652 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.713 ? ? 0.055 0.027 ? 16 1 0.994 0.999 ? 99.8 ? 0.047 ? ? ? ? ? ? ? ? ? 3.66 4.03 ? ? ? ? ? ? 634 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.569 ? ? 0.048 0.023 ? 17 1 0.995 0.999 ? 99.1 ? 0.041 ? ? ? ? ? ? ? ? ? 4.03 4.61 ? ? ? ? ? ? 634 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.454 ? ? 0.040 0.019 ? 18 1 0.996 0.999 ? 99.1 ? 0.035 ? ? ? ? ? ? ? ? ? 4.61 5.81 ? ? ? ? ? ? 657 ? ? ? ? ? ? ? ? ? ? ? 4.2 0.389 ? ? 0.038 0.018 ? 19 1 0.996 0.999 ? 99.4 ? 0.033 ? ? ? ? ? ? ? ? ? 5.81 50.00 ? ? ? ? ? ? 668 ? ? ? ? ? ? ? ? ? ? ? 4.0 0.508 ? ? 0.046 0.023 ? 20 1 0.997 0.999 ? 99.6 ? 0.040 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YV9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.14 _refine.ls_d_res_low 27.89 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12478 _refine.ls_number_reflns_R_free 625 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.62 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1807 _refine.ls_R_factor_R_free 0.2218 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1786 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.27 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.21 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 814 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1431 _refine_hist.d_res_high 2.14 _refine_hist.d_res_low 27.89 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1378 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.009 ? 1950 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 27.433 ? 340 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 209 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 164 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.14 2.36 . . 180 2757 92.00 . . . . 0.2026 . . . . . . . . . . . 0.2602 'X-RAY DIFFRACTION' 2.36 2.70 . . 150 2999 100.00 . . . . 0.2096 . . . . . . . . . . . 0.2727 'X-RAY DIFFRACTION' 2.70 3.40 . . 138 3030 99.00 . . . . 0.1894 . . . . . . . . . . . 0.2364 'X-RAY DIFFRACTION' 3.40 27.89 . . 157 3067 99.00 . . . . 0.1551 . . . . . . . . . . . 0.1827 # _struct.entry_id 8YV9 _struct.title 'Crystal structure of Caenorhabditis elegans HIM-8 ZF1-2-CTD domain in complex with Chromosome X pairing center' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YV9 _struct_keywords.text 'double stranded DNA binding protein, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP O18068_CAEEL O18068 ? 1 ;MKSPDSKNDEINKDEIHNIQCHFPNCNRAIAWKRKYGKLRLIDHALVHCDKNFLKCKKCKHTCHTIRQMRYHYRIFHSTS KMEGFGVSGLPTKNKGFQKIMNACFADQLVEMNKRKNPPKSQNGSRRSRVKSKSKRSGI ; 223 2 PDB 8YV9 8YV9 ? 2 ? 1 3 PDB 8YV9 8YV9 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8YV9 A 5 ? 143 ? O18068 223 ? 361 ? 223 361 2 2 8YV9 B 1 ? 12 ? 8YV9 1 ? 12 ? 1 12 3 3 8YV9 C 1 ? 12 ? 8YV9 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8YV9 GLY A 1 ? UNP O18068 ? ? 'expression tag' 219 1 1 8YV9 PRO A 2 ? UNP O18068 ? ? 'expression tag' 220 2 1 8YV9 HIS A 3 ? UNP O18068 ? ? 'expression tag' 221 3 1 8YV9 MET A 4 ? UNP O18068 ? ? 'expression tag' 222 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3660 ? 1 MORE -22 ? 1 'SSA (A^2)' 8770 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 37 ? GLY A 41 ? LYS A 255 GLY A 259 5 ? 5 HELX_P HELX_P2 AA2 LYS A 42 ? VAL A 51 ? LYS A 260 VAL A 269 1 ? 10 HELX_P HELX_P3 AA3 THR A 69 ? HIS A 81 ? THR A 287 HIS A 299 1 ? 13 HELX_P HELX_P4 AA4 GLY A 90 ? LEU A 94 ? GLY A 308 LEU A 312 5 ? 5 HELX_P HELX_P5 AA5 ASN A 98 ? ALA A 110 ? ASN A 316 ALA A 328 1 ? 13 HELX_P HELX_P6 AA6 LEU A 113 ? ASN A 117 ? LEU A 331 ASN A 335 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 25 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 243 A ZN 402 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc2 metalc ? ? A CYS 30 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 248 A ZN 402 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc3 metalc ? ? A HIS 48 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 266 A ZN 402 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc4 metalc ? ? A HIS 52 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 270 A ZN 402 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc5 metalc ? ? A CYS 60 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 278 A ZN 401 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc6 metalc ? ? A CYS 63 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 281 A ZN 401 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc7 metalc ? ? A HIS 76 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 294 A ZN 401 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc8 metalc ? ? A HIS 81 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 299 A ZN 401 1_555 ? ? ? ? ? ? ? 2.104 ? ? hydrog1 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 1 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 1 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 2 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 2 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 3 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 3 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 3 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 5 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 5 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 1 N3 ? ? B DA 12 C DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 1 O4 ? ? B DA 12 C DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 25 ? A CYS 243 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 SG ? A CYS 30 ? A CYS 248 ? 1_555 119.2 ? 2 SG ? A CYS 25 ? A CYS 243 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 48 ? A HIS 266 ? 1_555 112.5 ? 3 SG ? A CYS 30 ? A CYS 248 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 48 ? A HIS 266 ? 1_555 103.7 ? 4 SG ? A CYS 25 ? A CYS 243 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 52 ? A HIS 270 ? 1_555 112.0 ? 5 SG ? A CYS 30 ? A CYS 248 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 52 ? A HIS 270 ? 1_555 105.0 ? 6 NE2 ? A HIS 48 ? A HIS 266 ? 1_555 ZN ? E ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 52 ? A HIS 270 ? 1_555 102.8 ? 7 SG ? A CYS 60 ? A CYS 278 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 SG ? A CYS 63 ? A CYS 281 ? 1_555 121.5 ? 8 SG ? A CYS 60 ? A CYS 278 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 76 ? A HIS 294 ? 1_555 112.4 ? 9 SG ? A CYS 63 ? A CYS 281 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 76 ? A HIS 294 ? 1_555 99.5 ? 10 SG ? A CYS 60 ? A CYS 278 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 81 ? A HIS 299 ? 1_555 98.3 ? 11 SG ? A CYS 63 ? A CYS 281 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 81 ? A HIS 299 ? 1_555 118.9 ? 12 NE2 ? A HIS 76 ? A HIS 294 ? 1_555 ZN ? D ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 81 ? A HIS 299 ? 1_555 105.9 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 21 ? GLN A 24 ? HIS A 239 GLN A 242 AA1 2 ALA A 33 ? TRP A 36 ? ALA A 251 TRP A 254 AA2 1 LEU A 58 ? LYS A 59 ? LEU A 276 LYS A 277 AA2 2 THR A 66 ? CYS A 67 ? THR A 284 CYS A 285 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 21 ? N HIS A 239 O TRP A 36 ? O TRP A 254 AA2 1 2 N LEU A 58 ? N LEU A 276 O CYS A 67 ? O CYS A 285 # _pdbx_entry_details.entry_id 8YV9 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 551 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 562 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 116 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 116 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 113.62 108.30 5.32 0.30 N 2 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 111.06 108.30 2.76 0.30 N 3 1 "O4'" C DA 4 ? ? "C1'" C DA 4 ? ? N9 C DA 4 ? ? 110.35 108.30 2.05 0.30 N 4 1 "O5'" C DC 5 ? ? P C DC 5 ? ? OP1 C DC 5 ? ? 117.95 110.70 7.25 1.20 N 5 1 "O5'" C DC 5 ? ? P C DC 5 ? ? OP2 C DC 5 ? ? 99.67 105.70 -6.03 0.90 N 6 1 "O4'" C DC 5 ? ? "C4'" C DC 5 ? ? "C3'" C DC 5 ? ? 101.80 104.50 -2.70 0.40 N 7 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.34 108.30 3.04 0.30 N 8 1 "O4'" C DC 10 ? ? "C1'" C DC 10 ? ? N1 C DC 10 ? ? 110.10 108.30 1.80 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 219 ? A GLY 1 2 1 Y 1 A PRO 220 ? A PRO 2 3 1 Y 1 A HIS 221 ? A HIS 3 4 1 Y 1 A MET 222 ? A MET 4 5 1 Y 1 A MET 223 ? A MET 5 6 1 Y 1 A LYS 224 ? A LYS 6 7 1 Y 1 A SER 225 ? A SER 7 8 1 Y 1 A PRO 226 ? A PRO 8 9 1 Y 1 A ASP 227 ? A ASP 9 10 1 Y 1 A SER 228 ? A SER 10 11 1 Y 1 A LYS 229 ? A LYS 11 12 1 Y 1 A ASN 230 ? A ASN 12 13 1 Y 1 A ASP 231 ? A ASP 13 14 1 Y 1 A GLU 232 ? A GLU 14 15 1 Y 1 A ILE 233 ? A ILE 15 16 1 Y 1 A ASN 234 ? A ASN 16 17 1 Y 1 A LYS 235 ? A LYS 17 18 1 Y 1 A LYS 336 ? A LYS 118 19 1 Y 1 A ARG 337 ? A ARG 119 20 1 Y 1 A LYS 338 ? A LYS 120 21 1 Y 1 A ASN 339 ? A ASN 121 22 1 Y 1 A PRO 340 ? A PRO 122 23 1 Y 1 A PRO 341 ? A PRO 123 24 1 Y 1 A LYS 342 ? A LYS 124 25 1 Y 1 A SER 343 ? A SER 125 26 1 Y 1 A GLN 344 ? A GLN 126 27 1 Y 1 A ASN 345 ? A ASN 127 28 1 Y 1 A GLY 346 ? A GLY 128 29 1 Y 1 A SER 347 ? A SER 129 30 1 Y 1 A ARG 348 ? A ARG 130 31 1 Y 1 A ARG 349 ? A ARG 131 32 1 Y 1 A SER 350 ? A SER 132 33 1 Y 1 A ARG 351 ? A ARG 133 34 1 Y 1 A VAL 352 ? A VAL 134 35 1 Y 1 A LYS 353 ? A LYS 135 36 1 Y 1 A SER 354 ? A SER 136 37 1 Y 1 A LYS 355 ? A LYS 137 38 1 Y 1 A SER 356 ? A SER 138 39 1 Y 1 A LYS 357 ? A LYS 139 40 1 Y 1 A ARG 358 ? A ARG 140 41 1 Y 1 A SER 359 ? A SER 141 42 1 Y 1 A GLY 360 ? A GLY 142 43 1 Y 1 A ILE 361 ? A ILE 143 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 ZN ZN ZN N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8YV9 'double helix' 8YV9 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 C DA 12 1_555 -0.286 -0.273 0.137 -11.971 -13.401 -0.150 1 B_DT1:DA12_C B 1 ? C 12 ? 20 1 1 B DT 2 1_555 C DA 11 1_555 -0.230 -0.106 0.158 -6.957 -9.589 1.728 2 B_DT2:DA11_C B 2 ? C 11 ? 20 1 1 B DG 3 1_555 C DC 10 1_555 -0.258 -0.135 -0.277 -10.167 -3.401 0.791 3 B_DG3:DC10_C B 3 ? C 10 ? 19 1 1 B DG 4 1_555 C DC 9 1_555 -0.277 -0.158 -0.020 -3.772 -12.119 -2.155 4 B_DG4:DC9_C B 4 ? C 9 ? 19 1 1 B DT 5 1_555 C DA 8 1_555 -0.039 -0.247 0.339 -8.576 -14.870 3.560 5 B_DT5:DA8_C B 5 ? C 8 ? 20 1 1 B DC 6 1_555 C DG 7 1_555 0.094 -0.066 -0.292 4.895 -3.920 0.533 6 B_DC6:DG7_C B 6 ? C 7 ? 19 1 1 B DA 7 1_555 C DT 6 1_555 0.251 -0.231 -0.138 6.658 -10.451 -0.024 7 B_DA7:DT6_C B 7 ? C 6 ? 20 1 1 B DG 8 1_555 C DC 5 1_555 -0.154 0.003 -0.073 -11.796 -12.450 -0.768 8 B_DG8:DC5_C B 8 ? C 5 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 0.054 -0.134 0.088 -2.467 8.028 1.230 9 B_DT9:DA4_C B 9 ? C 4 ? 20 1 1 B DG 10 1_555 C DC 3 1_555 -0.116 -0.191 0.583 12.124 -15.591 -2.179 10 B_DG10:DC3_C B 10 ? C 3 ? 19 1 1 B DC 11 1_555 C DG 2 1_555 -0.122 -0.277 -0.073 4.658 -3.496 -4.856 11 B_DC11:DG2_C B 11 ? C 2 ? 19 1 1 B DA 12 1_555 C DT 1 1_555 0.627 -0.579 0.441 13.826 -4.582 4.807 12 B_DA12:DT1_C B 12 ? C 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 C DA 12 1_555 B DT 2 1_555 C DA 11 1_555 0.024 -0.346 3.182 1.159 1.069 35.836 -0.711 0.122 3.170 1.737 -1.883 35.870 1 BB_DT1DT2:DA11DA12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DT 2 1_555 C DA 11 1_555 B DG 3 1_555 C DC 10 1_555 1.447 0.178 3.365 6.271 5.613 31.819 -0.719 -1.402 3.557 10.021 -11.195 32.885 2 BB_DT2DG3:DC10DA11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DG 3 1_555 C DC 10 1_555 B DG 4 1_555 C DC 9 1_555 -1.522 0.533 3.201 -5.388 -1.369 37.481 0.998 1.648 3.359 -2.117 8.328 37.876 3 BB_DG3DG4:DC9DC10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DG 4 1_555 C DC 9 1_555 B DT 5 1_555 C DA 8 1_555 1.352 -0.243 3.441 0.758 -4.530 37.568 0.243 -1.982 3.471 -7.002 -1.172 37.837 4 BB_DG4DT5:DA8DC9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DT 5 1_555 C DA 8 1_555 B DC 6 1_555 C DG 7 1_555 -0.403 -0.775 3.010 4.494 3.786 31.906 -1.987 1.432 2.820 6.815 -8.089 32.429 5 BB_DT5DC6:DG7DA8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B DC 6 1_555 C DG 7 1_555 B DA 7 1_555 C DT 6 1_555 0.242 -0.718 3.388 -1.802 11.242 30.723 -3.215 -0.740 2.933 20.362 3.264 32.718 6 BB_DC6DA7:DT6DG7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DA 7 1_555 C DT 6 1_555 B DG 8 1_555 C DC 5 1_555 0.849 -1.749 3.814 -2.238 8.622 29.071 -5.211 -2.107 3.107 16.689 4.332 30.377 7 BB_DA7DG8:DC5DT6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.193 -0.427 3.289 1.594 0.675 30.400 -0.948 0.686 3.265 1.285 -3.036 30.449 8 BB_DG8DT9:DA4DC5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DG 10 1_555 C DC 3 1_555 -1.544 1.466 3.156 -3.574 -1.987 34.518 2.750 2.052 3.208 -3.334 5.997 34.752 9 BB_DT9DG10:DC3DA4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DG 10 1_555 C DC 3 1_555 B DC 11 1_555 C DG 2 1_555 1.015 0.369 3.568 7.184 -6.002 35.849 1.480 -0.524 3.593 -9.551 -11.433 37.012 10 BB_DG10DC11:DG2DC3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DC 11 1_555 C DG 2 1_555 B DA 12 1_555 C DT 1 1_555 -0.473 0.994 3.108 -4.303 3.434 36.866 1.113 0.186 3.217 5.393 6.757 37.261 11 BB_DC11DA12:DT1DG2_CC B 11 ? C 2 ? B 12 ? C 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China (NSFC)' China 32371282 1 'National Natural Science Foundation of China (NSFC)' China 32171222 2 # _atom_sites.entry_id 8YV9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.016943 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005857 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018418 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013782 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S ZN # loop_ #