data_8YVB # _entry.id 8YVB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YVB pdb_00008yvb 10.2210/pdb8yvb/pdb WWPDB D_1300046443 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YVB _pdbx_database_status.recvd_initial_deposition_date 2024-03-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email lifudong@ustc.edu.cn _pdbx_contact_author.name_first Fudong _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9434-3762 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, F.D.' 1 ? 'Li, M.L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 10355 _citation.page_last 10355 _citation.title 'Structural basis for C. elegans pairing center DNA binding specificity by the ZIM/HIM-8 family proteins.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-54548-9 _citation.pdbx_database_id_PubMed 39609407 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Zhu, C.' 2 0000-0003-4930-2192 primary 'Xu, Z.' 3 0000-0002-5374-4121 primary 'Xu, M.' 4 ? primary 'Kuang, Y.' 5 ? primary 'Hou, X.' 6 ? primary 'Huang, X.' 7 0009-0006-1077-1564 primary 'Lv, M.' 8 ? primary 'Liu, Y.' 9 ? primary 'Zhang, Y.' 10 ? primary 'Xu, Z.' 11 ? primary 'Han, X.' 12 ? primary 'Wang, S.' 13 ? primary 'Shi, Y.' 14 0000-0002-1348-4759 primary 'Guang, S.' 15 0000-0001-7700-9634 primary 'Li, F.' 16 0000-0002-9434-3762 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C2H2-type domain-containing protein' 15013.706 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*GP*GP*TP*CP*TP*GP*CP*TP*A)-3') ; 3355.194 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*AP*GP*CP*AP*GP*AP*CP*CP*AP*A)-3') ; 3047.033 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 110 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPHMSFAVPLVQSRSKQKDEMNKVHIIKCHFDKCNKSYNWRKKYGKLRLVDHAFTHVPHLKMKCNFCDYMCKGIRNIRLH HKKSHPDEQLTGFGIKSVVRTSKKGKDLAKVWDECFKKNRVLQHGSGT ; ;GPHMSFAVPLVQSRSKQKDEMNKVHIIKCHFDKCNKSYNWRKKYGKLRLVDHAFTHVPHLKMKCNFCDYMCKGIRNIRLH HKKSHPDEQLTGFGIKSVVRTSKKGKDLAKVWDECFKKNRVLQHGSGT ; A ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DT)(DC)(DT)(DG)(DC)(DT)(DA)' TTGGTCTGCTA B ? 3 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DA)(DG)(DA)(DC)(DC)(DA)(DA)' AGCAGACCAA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 PHE n 1 7 ALA n 1 8 VAL n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 GLN n 1 13 SER n 1 14 ARG n 1 15 SER n 1 16 LYS n 1 17 GLN n 1 18 LYS n 1 19 ASP n 1 20 GLU n 1 21 MET n 1 22 ASN n 1 23 LYS n 1 24 VAL n 1 25 HIS n 1 26 ILE n 1 27 ILE n 1 28 LYS n 1 29 CYS n 1 30 HIS n 1 31 PHE n 1 32 ASP n 1 33 LYS n 1 34 CYS n 1 35 ASN n 1 36 LYS n 1 37 SER n 1 38 TYR n 1 39 ASN n 1 40 TRP n 1 41 ARG n 1 42 LYS n 1 43 LYS n 1 44 TYR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 ARG n 1 49 LEU n 1 50 VAL n 1 51 ASP n 1 52 HIS n 1 53 ALA n 1 54 PHE n 1 55 THR n 1 56 HIS n 1 57 VAL n 1 58 PRO n 1 59 HIS n 1 60 LEU n 1 61 LYS n 1 62 MET n 1 63 LYS n 1 64 CYS n 1 65 ASN n 1 66 PHE n 1 67 CYS n 1 68 ASP n 1 69 TYR n 1 70 MET n 1 71 CYS n 1 72 LYS n 1 73 GLY n 1 74 ILE n 1 75 ARG n 1 76 ASN n 1 77 ILE n 1 78 ARG n 1 79 LEU n 1 80 HIS n 1 81 HIS n 1 82 LYS n 1 83 LYS n 1 84 SER n 1 85 HIS n 1 86 PRO n 1 87 ASP n 1 88 GLU n 1 89 GLN n 1 90 LEU n 1 91 THR n 1 92 GLY n 1 93 PHE n 1 94 GLY n 1 95 ILE n 1 96 LYS n 1 97 SER n 1 98 VAL n 1 99 VAL n 1 100 ARG n 1 101 THR n 1 102 SER n 1 103 LYS n 1 104 LYS n 1 105 GLY n 1 106 LYS n 1 107 ASP n 1 108 LEU n 1 109 ALA n 1 110 LYS n 1 111 VAL n 1 112 TRP n 1 113 ASP n 1 114 GLU n 1 115 CYS n 1 116 PHE n 1 117 LYS n 1 118 LYS n 1 119 ASN n 1 120 ARG n 1 121 VAL n 1 122 LEU n 1 123 GLN n 1 124 HIS n 1 125 GLY n 1 126 SER n 1 127 GLY n 1 128 THR n 2 1 DT n 2 2 DT n 2 3 DG n 2 4 DG n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DG n 2 9 DC n 2 10 DT n 2 11 DA n 3 1 DA n 3 2 DG n 3 3 DC n 3 4 DA n 3 5 DG n 3 6 DA n 3 7 DC n 3 8 DC n 3 9 DA n 3 10 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'zim-1, CELE_T07G12.6, T07G12.6' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 11 'Caenorhabditis elegans' ? 6239 ? 3 1 sample 1 10 'Caenorhabditis elegans' ? 6239 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 433 ? ? ? A . n A 1 2 PRO 2 434 ? ? ? A . n A 1 3 HIS 3 435 ? ? ? A . n A 1 4 MET 4 436 ? ? ? A . n A 1 5 SER 5 437 ? ? ? A . n A 1 6 PHE 6 438 ? ? ? A . n A 1 7 ALA 7 439 ? ? ? A . n A 1 8 VAL 8 440 ? ? ? A . n A 1 9 PRO 9 441 ? ? ? A . n A 1 10 LEU 10 442 ? ? ? A . n A 1 11 VAL 11 443 ? ? ? A . n A 1 12 GLN 12 444 ? ? ? A . n A 1 13 SER 13 445 ? ? ? A . n A 1 14 ARG 14 446 ? ? ? A . n A 1 15 SER 15 447 ? ? ? A . n A 1 16 LYS 16 448 ? ? ? A . n A 1 17 GLN 17 449 ? ? ? A . n A 1 18 LYS 18 450 ? ? ? A . n A 1 19 ASP 19 451 ? ? ? A . n A 1 20 GLU 20 452 ? ? ? A . n A 1 21 MET 21 453 ? ? ? A . n A 1 22 ASN 22 454 454 ASN ASN A . n A 1 23 LYS 23 455 455 LYS LYS A . n A 1 24 VAL 24 456 456 VAL VAL A . n A 1 25 HIS 25 457 457 HIS HIS A . n A 1 26 ILE 26 458 458 ILE ILE A . n A 1 27 ILE 27 459 459 ILE ILE A . n A 1 28 LYS 28 460 460 LYS LYS A . n A 1 29 CYS 29 461 461 CYS CYS A . n A 1 30 HIS 30 462 462 HIS HIS A . n A 1 31 PHE 31 463 463 PHE PHE A . n A 1 32 ASP 32 464 464 ASP ASP A . n A 1 33 LYS 33 465 465 LYS LYS A . n A 1 34 CYS 34 466 466 CYS CYS A . n A 1 35 ASN 35 467 467 ASN ASN A . n A 1 36 LYS 36 468 468 LYS LYS A . n A 1 37 SER 37 469 469 SER SER A . n A 1 38 TYR 38 470 470 TYR TYR A . n A 1 39 ASN 39 471 471 ASN ASN A . n A 1 40 TRP 40 472 472 TRP TRP A . n A 1 41 ARG 41 473 473 ARG ARG A . n A 1 42 LYS 42 474 474 LYS LYS A . n A 1 43 LYS 43 475 475 LYS LYS A . n A 1 44 TYR 44 476 476 TYR TYR A . n A 1 45 GLY 45 477 477 GLY GLY A . n A 1 46 LYS 46 478 478 LYS LYS A . n A 1 47 LEU 47 479 479 LEU LEU A . n A 1 48 ARG 48 480 480 ARG ARG A . n A 1 49 LEU 49 481 481 LEU LEU A . n A 1 50 VAL 50 482 482 VAL VAL A . n A 1 51 ASP 51 483 483 ASP ASP A . n A 1 52 HIS 52 484 484 HIS HIS A . n A 1 53 ALA 53 485 485 ALA ALA A . n A 1 54 PHE 54 486 486 PHE PHE A . n A 1 55 THR 55 487 487 THR THR A . n A 1 56 HIS 56 488 488 HIS HIS A . n A 1 57 VAL 57 489 489 VAL VAL A . n A 1 58 PRO 58 490 490 PRO PRO A . n A 1 59 HIS 59 491 491 HIS HIS A . n A 1 60 LEU 60 492 492 LEU LEU A . n A 1 61 LYS 61 493 493 LYS LYS A . n A 1 62 MET 62 494 494 MET MET A . n A 1 63 LYS 63 495 495 LYS LYS A . n A 1 64 CYS 64 496 496 CYS CYS A . n A 1 65 ASN 65 497 497 ASN ASN A . n A 1 66 PHE 66 498 498 PHE PHE A . n A 1 67 CYS 67 499 499 CYS CYS A . n A 1 68 ASP 68 500 500 ASP ASP A . n A 1 69 TYR 69 501 501 TYR TYR A . n A 1 70 MET 70 502 502 MET MET A . n A 1 71 CYS 71 503 503 CYS CYS A . n A 1 72 LYS 72 504 504 LYS LYS A . n A 1 73 GLY 73 505 505 GLY GLY A . n A 1 74 ILE 74 506 506 ILE ILE A . n A 1 75 ARG 75 507 507 ARG ARG A . n A 1 76 ASN 76 508 508 ASN ASN A . n A 1 77 ILE 77 509 509 ILE ILE A . n A 1 78 ARG 78 510 510 ARG ARG A . n A 1 79 LEU 79 511 511 LEU LEU A . n A 1 80 HIS 80 512 512 HIS HIS A . n A 1 81 HIS 81 513 513 HIS HIS A . n A 1 82 LYS 82 514 514 LYS LYS A . n A 1 83 LYS 83 515 515 LYS LYS A . n A 1 84 SER 84 516 516 SER SER A . n A 1 85 HIS 85 517 517 HIS HIS A . n A 1 86 PRO 86 518 518 PRO PRO A . n A 1 87 ASP 87 519 519 ASP ASP A . n A 1 88 GLU 88 520 520 GLU GLU A . n A 1 89 GLN 89 521 521 GLN GLN A . n A 1 90 LEU 90 522 522 LEU LEU A . n A 1 91 THR 91 523 523 THR THR A . n A 1 92 GLY 92 524 524 GLY GLY A . n A 1 93 PHE 93 525 525 PHE PHE A . n A 1 94 GLY 94 526 526 GLY GLY A . n A 1 95 ILE 95 527 527 ILE ILE A . n A 1 96 LYS 96 528 528 LYS LYS A . n A 1 97 SER 97 529 529 SER SER A . n A 1 98 VAL 98 530 530 VAL VAL A . n A 1 99 VAL 99 531 531 VAL VAL A . n A 1 100 ARG 100 532 532 ARG ARG A . n A 1 101 THR 101 533 533 THR THR A . n A 1 102 SER 102 534 534 SER SER A . n A 1 103 LYS 103 535 535 LYS LYS A . n A 1 104 LYS 104 536 536 LYS LYS A . n A 1 105 GLY 105 537 537 GLY GLY A . n A 1 106 LYS 106 538 538 LYS LYS A . n A 1 107 ASP 107 539 539 ASP ASP A . n A 1 108 LEU 108 540 540 LEU LEU A . n A 1 109 ALA 109 541 541 ALA ALA A . n A 1 110 LYS 110 542 542 LYS LYS A . n A 1 111 VAL 111 543 543 VAL VAL A . n A 1 112 TRP 112 544 544 TRP TRP A . n A 1 113 ASP 113 545 545 ASP ASP A . n A 1 114 GLU 114 546 546 GLU GLU A . n A 1 115 CYS 115 547 547 CYS CYS A . n A 1 116 PHE 116 548 548 PHE PHE A . n A 1 117 LYS 117 549 549 LYS LYS A . n A 1 118 LYS 118 550 550 LYS LYS A . n A 1 119 ASN 119 551 551 ASN ASN A . n A 1 120 ARG 120 552 552 ARG ARG A . n A 1 121 VAL 121 553 553 VAL VAL A . n A 1 122 LEU 122 554 554 LEU LEU A . n A 1 123 GLN 123 555 555 GLN GLN A . n A 1 124 HIS 124 556 556 HIS HIS A . n A 1 125 GLY 125 557 557 GLY GLY A . n A 1 126 SER 126 558 558 SER SER A . n A 1 127 GLY 127 559 ? ? ? A . n A 1 128 THR 128 560 ? ? ? A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DA 11 11 11 DA DA B . n C 3 1 DA 1 2 2 DA DA C . n C 3 2 DG 2 3 3 DG DG C . n C 3 3 DC 3 4 4 DC DC C . n C 3 4 DA 4 5 5 DA DA C . n C 3 5 DG 5 6 6 DG DG C . n C 3 6 DA 6 7 7 DA DA C . n C 3 7 DC 7 8 8 DC DC C . n C 3 8 DC 8 9 9 DC DC C . n C 3 9 DA 9 10 10 DA DA C . n C 3 10 DA 10 11 11 DA DA C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ZN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ZN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 601 6 ZN ZN A . E 4 ZN 1 602 8 ZN ZN A . F 5 HOH 1 701 107 HOH HOH A . F 5 HOH 2 702 51 HOH HOH A . F 5 HOH 3 703 92 HOH HOH A . F 5 HOH 4 704 99 HOH HOH A . F 5 HOH 5 705 62 HOH HOH A . F 5 HOH 6 706 83 HOH HOH A . F 5 HOH 7 707 108 HOH HOH A . F 5 HOH 8 708 97 HOH HOH A . F 5 HOH 9 709 100 HOH HOH A . F 5 HOH 10 710 31 HOH HOH A . F 5 HOH 11 711 53 HOH HOH A . F 5 HOH 12 712 121 HOH HOH A . F 5 HOH 13 713 12 HOH HOH A . F 5 HOH 14 714 24 HOH HOH A . F 5 HOH 15 715 50 HOH HOH A . F 5 HOH 16 716 55 HOH HOH A . F 5 HOH 17 717 110 HOH HOH A . F 5 HOH 18 718 94 HOH HOH A . F 5 HOH 19 719 28 HOH HOH A . F 5 HOH 20 720 44 HOH HOH A . F 5 HOH 21 721 8 HOH HOH A . F 5 HOH 22 722 29 HOH HOH A . F 5 HOH 23 723 37 HOH HOH A . F 5 HOH 24 724 17 HOH HOH A . F 5 HOH 25 725 36 HOH HOH A . F 5 HOH 26 726 7 HOH HOH A . F 5 HOH 27 727 76 HOH HOH A . F 5 HOH 28 728 6 HOH HOH A . F 5 HOH 29 729 61 HOH HOH A . F 5 HOH 30 730 125 HOH HOH A . F 5 HOH 31 731 47 HOH HOH A . F 5 HOH 32 732 42 HOH HOH A . F 5 HOH 33 733 87 HOH HOH A . F 5 HOH 34 734 79 HOH HOH A . F 5 HOH 35 735 40 HOH HOH A . F 5 HOH 36 736 68 HOH HOH A . F 5 HOH 37 737 72 HOH HOH A . F 5 HOH 38 738 93 HOH HOH A . F 5 HOH 39 739 38 HOH HOH A . F 5 HOH 40 740 52 HOH HOH A . F 5 HOH 41 741 35 HOH HOH A . F 5 HOH 42 742 13 HOH HOH A . F 5 HOH 43 743 74 HOH HOH A . F 5 HOH 44 744 119 HOH HOH A . F 5 HOH 45 745 14 HOH HOH A . F 5 HOH 46 746 95 HOH HOH A . F 5 HOH 47 747 49 HOH HOH A . F 5 HOH 48 748 65 HOH HOH A . F 5 HOH 49 749 102 HOH HOH A . F 5 HOH 50 750 46 HOH HOH A . F 5 HOH 51 751 63 HOH HOH A . F 5 HOH 52 752 103 HOH HOH A . F 5 HOH 53 753 71 HOH HOH A . F 5 HOH 54 754 60 HOH HOH A . F 5 HOH 55 755 77 HOH HOH A . F 5 HOH 56 756 10 HOH HOH A . F 5 HOH 57 757 115 HOH HOH A . F 5 HOH 58 758 106 HOH HOH A . F 5 HOH 59 759 98 HOH HOH A . F 5 HOH 60 760 112 HOH HOH A . F 5 HOH 61 761 69 HOH HOH A . F 5 HOH 62 762 109 HOH HOH A . F 5 HOH 63 763 81 HOH HOH A . F 5 HOH 64 764 104 HOH HOH A . F 5 HOH 65 765 20 HOH HOH A . G 5 HOH 1 101 70 HOH HOH B . G 5 HOH 2 102 123 HOH HOH B . G 5 HOH 3 103 45 HOH HOH B . G 5 HOH 4 104 57 HOH HOH B . G 5 HOH 5 105 86 HOH HOH B . G 5 HOH 6 106 4 HOH HOH B . G 5 HOH 7 107 16 HOH HOH B . G 5 HOH 8 108 117 HOH HOH B . G 5 HOH 9 109 111 HOH HOH B . G 5 HOH 10 110 39 HOH HOH B . G 5 HOH 11 111 85 HOH HOH B . G 5 HOH 12 112 41 HOH HOH B . G 5 HOH 13 113 80 HOH HOH B . G 5 HOH 14 114 88 HOH HOH B . G 5 HOH 15 115 9 HOH HOH B . G 5 HOH 16 116 118 HOH HOH B . G 5 HOH 17 117 90 HOH HOH B . G 5 HOH 18 118 75 HOH HOH B . G 5 HOH 19 119 30 HOH HOH B . G 5 HOH 20 120 22 HOH HOH B . G 5 HOH 21 121 32 HOH HOH B . G 5 HOH 22 122 1 HOH HOH B . G 5 HOH 23 123 58 HOH HOH B . G 5 HOH 24 124 105 HOH HOH B . G 5 HOH 25 125 122 HOH HOH B . H 5 HOH 1 101 124 HOH HOH C . H 5 HOH 2 102 64 HOH HOH C . H 5 HOH 3 103 66 HOH HOH C . H 5 HOH 4 104 11 HOH HOH C . H 5 HOH 5 105 91 HOH HOH C . H 5 HOH 6 106 23 HOH HOH C . H 5 HOH 7 107 3 HOH HOH C . H 5 HOH 8 108 56 HOH HOH C . H 5 HOH 9 109 18 HOH HOH C . H 5 HOH 10 110 84 HOH HOH C . H 5 HOH 11 111 5 HOH HOH C . H 5 HOH 12 112 15 HOH HOH C . H 5 HOH 13 113 2 HOH HOH C . H 5 HOH 14 114 120 HOH HOH C . H 5 HOH 15 115 73 HOH HOH C . H 5 HOH 16 116 34 HOH HOH C . H 5 HOH 17 117 54 HOH HOH C . H 5 HOH 18 118 19 HOH HOH C . H 5 HOH 19 119 101 HOH HOH C . H 5 HOH 20 120 33 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 536 ? CG ? A LYS 104 CG 2 1 Y 1 A LYS 536 ? CD ? A LYS 104 CD 3 1 Y 1 A LYS 536 ? CE ? A LYS 104 CE 4 1 Y 1 A LYS 536 ? NZ ? A LYS 104 NZ 5 1 Y 1 A ARG 552 ? CG ? A ARG 120 CG 6 1 Y 1 A ARG 552 ? CD ? A ARG 120 CD 7 1 Y 1 A ARG 552 ? NE ? A ARG 120 NE 8 1 Y 1 A ARG 552 ? CZ ? A ARG 120 CZ 9 1 Y 1 A ARG 552 ? NH1 ? A ARG 120 NH1 10 1 Y 1 A ARG 552 ? NH2 ? A ARG 120 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8YVB _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.767 _cell.length_a_esd ? _cell.length_b 62.464 _cell.length_b_esd ? _cell.length_c 101.564 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YVB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% w/v PEG 600 and 0.1 M HEPES, pH 7.4' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-07-17 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97853 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97853 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8YVB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 20.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14363 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.8 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.956 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.101 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 183804 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.90 1.93 ? ? ? ? ? ? 696 ? ? ? ? ? ? ? ? ? ? ? 11.9 0.947 ? ? 1.015 0.289 ? 1 1 0.853 0.960 ? 100.0 ? 0.972 ? ? ? ? ? ? ? ? ? 1.93 1.97 ? ? ? ? ? ? 699 ? ? ? ? ? ? ? ? ? ? ? 12.5 0.939 ? ? 0.961 0.269 ? 2 1 0.870 0.965 ? 100.0 ? 0.921 ? ? ? ? ? ? ? ? ? 1.97 2.01 ? ? ? ? ? ? 717 ? ? ? ? ? ? ? ? ? ? ? 12.3 0.954 ? ? 0.814 0.229 ? 3 1 0.887 0.969 ? 100.0 ? 0.780 ? ? ? ? ? ? ? ? ? 2.01 2.05 ? ? ? ? ? ? 691 ? ? ? ? ? ? ? ? ? ? ? 13.0 0.944 ? ? 0.692 0.190 ? 4 1 0.908 0.975 ? 100.0 ? 0.665 ? ? ? ? ? ? ? ? ? 2.05 2.09 ? ? ? ? ? ? 730 ? ? ? ? ? ? ? ? ? ? ? 12.7 0.967 ? ? 0.595 0.165 ? 5 1 0.940 0.984 ? 100.0 ? 0.571 ? ? ? ? ? ? ? ? ? 2.09 2.14 ? ? ? ? ? ? 689 ? ? ? ? ? ? ? ? ? ? ? 12.7 0.997 ? ? 0.473 0.132 ? 6 1 0.960 0.990 ? 100.0 ? 0.454 ? ? ? ? ? ? ? ? ? 2.14 2.19 ? ? ? ? ? ? 716 ? ? ? ? ? ? ? ? ? ? ? 11.3 0.982 ? ? 0.381 0.111 ? 7 1 0.964 0.991 ? 100.0 ? 0.364 ? ? ? ? ? ? ? ? ? 2.19 2.25 ? ? ? ? ? ? 698 ? ? ? ? ? ? ? ? ? ? ? 13.4 0.971 ? ? 0.349 0.095 ? 8 1 0.977 0.994 ? 100.0 ? 0.336 ? ? ? ? ? ? ? ? ? 2.25 2.32 ? ? ? ? ? ? 730 ? ? ? ? ? ? ? ? ? ? ? 13.6 1.006 ? ? 0.303 0.082 ? 9 1 0.983 0.996 ? 100.0 ? 0.292 ? ? ? ? ? ? ? ? ? 2.32 2.39 ? ? ? ? ? ? 705 ? ? ? ? ? ? ? ? ? ? ? 13.5 0.986 ? ? 0.261 0.070 ? 10 1 0.983 0.996 ? 100.0 ? 0.251 ? ? ? ? ? ? ? ? ? 2.39 2.48 ? ? ? ? ? ? 726 ? ? ? ? ? ? ? ? ? ? ? 13.3 0.960 ? ? 0.233 0.064 ? 11 1 0.989 0.997 ? 100.0 ? 0.224 ? ? ? ? ? ? ? ? ? 2.48 2.58 ? ? ? ? ? ? 696 ? ? ? ? ? ? ? ? ? ? ? 13.3 0.979 ? ? 0.183 0.050 ? 12 1 0.991 0.998 ? 100.0 ? 0.176 ? ? ? ? ? ? ? ? ? 2.58 2.69 ? ? ? ? ? ? 715 ? ? ? ? ? ? ? ? ? ? ? 13.2 0.985 ? ? 0.155 0.043 ? 13 1 0.994 0.999 ? 100.0 ? 0.149 ? ? ? ? ? ? ? ? ? 2.69 2.84 ? ? ? ? ? ? 725 ? ? ? ? ? ? ? ? ? ? ? 11.6 0.958 ? ? 0.129 0.037 ? 14 1 0.993 0.998 ? 99.7 ? 0.123 ? ? ? ? ? ? ? ? ? 2.84 3.01 ? ? ? ? ? ? 712 ? ? ? ? ? ? ? ? ? ? ? 13.7 1.028 ? ? 0.112 0.030 ? 15 1 0.996 0.999 ? 100.0 ? 0.108 ? ? ? ? ? ? ? ? ? 3.01 3.25 ? ? ? ? ? ? 727 ? ? ? ? ? ? ? ? ? ? ? 13.6 0.989 ? ? 0.087 0.024 ? 16 1 0.998 0.999 ? 100.0 ? 0.084 ? ? ? ? ? ? ? ? ? 3.25 3.57 ? ? ? ? ? ? 729 ? ? ? ? ? ? ? ? ? ? ? 13.2 0.971 ? ? 0.076 0.021 ? 17 1 0.999 1.000 ? 100.0 ? 0.073 ? ? ? ? ? ? ? ? ? 3.57 4.08 ? ? ? ? ? ? 736 ? ? ? ? ? ? ? ? ? ? ? 12.2 0.916 ? ? 0.071 0.020 ? 18 1 0.998 0.999 ? 99.7 ? 0.068 ? ? ? ? ? ? ? ? ? 4.08 5.13 ? ? ? ? ? ? 739 ? ? ? ? ? ? ? ? ? ? ? 13.0 0.872 ? ? 0.068 0.019 ? 19 1 0.996 0.999 ? 100.0 ? 0.065 ? ? ? ? ? ? ? ? ? 5.13 20.00 ? ? ? ? ? ? 787 ? ? ? ? ? ? ? ? ? ? ? 12.1 0.759 ? ? 0.064 0.018 ? 20 1 0.998 0.999 ? 99.4 ? 0.061 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8YVB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 19.70 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14122 _refine.ls_number_reflns_R_free 692 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.76 _refine.ls_percent_reflns_R_free 4.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1920 _refine.ls_R_factor_R_free 0.2389 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1896 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.87 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.20 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 864 _refine_hist.pdbx_number_atoms_nucleic_acid 428 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1404 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.70 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 1365 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.585 ? 1917 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 26.111 ? 538 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.040 ? 204 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 167 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.90 2.05 . . 131 2492 95.00 . . . . 0.2246 . . . . . . . . . . . 0.2615 'X-RAY DIFFRACTION' 2.05 2.25 . . 142 2677 100.00 . . . . 0.2069 . . . . . . . . . . . 0.2783 'X-RAY DIFFRACTION' 2.25 2.58 . . 141 2705 100.00 . . . . 0.1988 . . . . . . . . . . . 0.2586 'X-RAY DIFFRACTION' 2.58 3.24 . . 126 2739 100.00 . . . . 0.1980 . . . . . . . . . . . 0.2257 'X-RAY DIFFRACTION' 3.25 19.70 . . 152 2817 100.00 . . . . 0.1684 . . . . . . . . . . . 0.2208 # _struct.entry_id 8YVB _struct.title 'Crystal structure of Caenorhabditis elegans ZIM-1 ZF1-2-CTD domain in complex with Chromosome II/III pairing center' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YVB _struct_keywords.text 'double stranded DNA binding protein, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP B2MZC6_CAEEL B2MZC6 ? 1 ;SFAVPLVQSRSKQKDEMNKVHIIKCHFDKCNKSYNWRKKYGKLRLVDHAFTHVPHLKMKCNFCDYMCKGIRNIRLHHKKS HPDEQLTGFGIKSVVRTSKKGKDLAKVWDECFKKNRVLQHGSGT ; 437 2 PDB 8YVB 8YVB ? 2 ? 1 3 PDB 8YVB 8YVB ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8YVB A 5 ? 128 ? B2MZC6 437 ? 560 ? 437 560 2 2 8YVB B 1 ? 11 ? 8YVB 1 ? 11 ? 1 11 3 3 8YVB C 1 ? 10 ? 8YVB 2 ? 11 ? 2 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8YVB GLY A 1 ? UNP B2MZC6 ? ? 'expression tag' 433 1 1 8YVB PRO A 2 ? UNP B2MZC6 ? ? 'expression tag' 434 2 1 8YVB HIS A 3 ? UNP B2MZC6 ? ? 'expression tag' 435 3 1 8YVB MET A 4 ? UNP B2MZC6 ? ? 'expression tag' 436 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3050 ? 1 MORE -18 ? 1 'SSA (A^2)' 9760 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 41 ? GLY A 45 ? ARG A 473 GLY A 477 5 ? 5 HELX_P HELX_P2 AA2 LYS A 46 ? THR A 55 ? LYS A 478 THR A 487 1 ? 10 HELX_P HELX_P3 AA3 GLY A 73 ? HIS A 85 ? GLY A 505 HIS A 517 1 ? 13 HELX_P HELX_P4 AA4 GLY A 94 ? LYS A 96 ? GLY A 526 LYS A 528 5 ? 3 HELX_P HELX_P5 AA5 SER A 97 ? SER A 102 ? SER A 529 SER A 534 1 ? 6 HELX_P HELX_P6 AA6 LYS A 104 ? LYS A 117 ? LYS A 536 LYS A 549 1 ? 14 HELX_P HELX_P7 AA7 ASN A 119 ? GLN A 123 ? ASN A 551 GLN A 555 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 29 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 461 A ZN 601 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc2 metalc ? ? A CYS 34 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 466 A ZN 601 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc3 metalc ? ? A HIS 52 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 484 A ZN 601 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc4 metalc ? ? A HIS 56 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 488 A ZN 601 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc5 metalc ? ? A CYS 64 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 496 A ZN 602 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc6 metalc ? ? A CYS 67 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 499 A ZN 602 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc7 metalc ? ? A HIS 80 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 512 A ZN 602 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc8 metalc ? ? A HIS 85 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 517 A ZN 602 1_555 ? ? ? ? ? ? ? 2.070 ? ? hydrog1 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 1 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 1 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 2 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 2 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 3 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 3 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 3 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 4 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 4 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 4 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 5 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 5 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 6 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 6 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 6 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 7 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 7 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 8 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 8 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 8 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 9 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 9 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 9 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DA 1 N7 ? ? B DA 11 C DA 2 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog25 hydrog ? ? B DA 11 N7 ? ? ? 1_555 C DA 1 N6 ? ? B DA 11 C DA 2 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 29 ? A CYS 461 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 SG ? A CYS 34 ? A CYS 466 ? 1_555 115.4 ? 2 SG ? A CYS 29 ? A CYS 461 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 52 ? A HIS 484 ? 1_555 104.1 ? 3 SG ? A CYS 34 ? A CYS 466 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 52 ? A HIS 484 ? 1_555 105.4 ? 4 SG ? A CYS 29 ? A CYS 461 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 56 ? A HIS 488 ? 1_555 112.1 ? 5 SG ? A CYS 34 ? A CYS 466 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 56 ? A HIS 488 ? 1_555 109.7 ? 6 NE2 ? A HIS 52 ? A HIS 484 ? 1_555 ZN ? D ZN . ? A ZN 601 ? 1_555 NE2 ? A HIS 56 ? A HIS 488 ? 1_555 109.6 ? 7 SG ? A CYS 64 ? A CYS 496 ? 1_555 ZN ? E ZN . ? A ZN 602 ? 1_555 SG ? A CYS 67 ? A CYS 499 ? 1_555 121.3 ? 8 SG ? A CYS 64 ? A CYS 496 ? 1_555 ZN ? E ZN . ? A ZN 602 ? 1_555 NE2 ? A HIS 80 ? A HIS 512 ? 1_555 106.3 ? 9 SG ? A CYS 67 ? A CYS 499 ? 1_555 ZN ? E ZN . ? A ZN 602 ? 1_555 NE2 ? A HIS 80 ? A HIS 512 ? 1_555 104.5 ? 10 SG ? A CYS 64 ? A CYS 496 ? 1_555 ZN ? E ZN . ? A ZN 602 ? 1_555 NE2 ? A HIS 85 ? A HIS 517 ? 1_555 101.6 ? 11 SG ? A CYS 67 ? A CYS 499 ? 1_555 ZN ? E ZN . ? A ZN 602 ? 1_555 NE2 ? A HIS 85 ? A HIS 517 ? 1_555 116.4 ? 12 NE2 ? A HIS 80 ? A HIS 512 ? 1_555 ZN ? E ZN . ? A ZN 602 ? 1_555 NE2 ? A HIS 85 ? A HIS 517 ? 1_555 105.6 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 25 ? LYS A 28 ? HIS A 457 LYS A 460 AA1 2 SER A 37 ? TRP A 40 ? SER A 469 TRP A 472 AA2 1 MET A 62 ? LYS A 63 ? MET A 494 LYS A 495 AA2 2 MET A 70 ? CYS A 71 ? MET A 502 CYS A 503 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 25 ? N HIS A 457 O TRP A 40 ? O TRP A 472 AA2 1 2 N MET A 62 ? N MET A 494 O CYS A 71 ? O CYS A 503 # _pdbx_entry_details.entry_id 8YVB _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 110 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 110 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.09 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.74 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.44 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 536 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -97.44 _pdbx_validate_torsion.psi 31.21 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 C HOH 118 ? H HOH . 2 1 C HOH 120 ? H HOH . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 8.5443 -19.3807 9.4904 0.1750 ? -0.0427 ? 0.0850 ? 0.1679 ? -0.0173 ? 0.1159 ? 1.4199 ? -0.2372 ? -0.1888 ? 0.6916 ? 0.0094 ? 0.8203 ? 0.0621 ? 0.4871 ? -0.0364 ? -0.5493 ? -0.0711 ? -0.2203 ? -0.1834 ? 0.0426 ? 0.0175 ? 2 'X-RAY DIFFRACTION' ? refined 0.5877 -36.6908 15.3719 0.0983 ? -0.0062 ? 0.0084 ? 0.1632 ? 0.0169 ? 0.1869 ? 2.4202 ? 0.5326 ? -0.2099 ? 2.3141 ? -0.5687 ? 1.9269 ? 0.0010 ? -0.1489 ? -0.5209 ? -0.2520 ? -0.2203 ? -0.3149 ? 0.2096 ? 0.2824 ? 0.1155 ? 3 'X-RAY DIFFRACTION' ? refined 1.8367 -31.7739 23.8883 0.2205 ? -0.0539 ? 0.0574 ? 0.1810 ? 0.0733 ? 0.2478 ? 0.2545 ? 0.4407 ? 0.3974 ? 1.0788 ? 0.5541 ? 0.6604 ? -0.0797 ? -0.3176 ? -0.1914 ? 0.2340 ? -0.1494 ? 0.1929 ? 0.3728 ? -0.1519 ? -0.1110 ? 4 'X-RAY DIFFRACTION' ? refined 14.1314 -16.8551 16.7125 0.1647 ? -0.0759 ? 0.0563 ? 0.1853 ? -0.0384 ? 0.2217 ? 1.0233 ? -0.4165 ? -0.9709 ? 2.7293 ? 0.3611 ? 1.7628 ? -0.2141 ? 0.0059 ? -0.0823 ? 0.0730 ? 0.2440 ? -0.5462 ? -0.1386 ? 0.5392 ? 0.1773 ? 5 'X-RAY DIFFRACTION' ? refined -6.4339 -18.9784 13.1304 0.1433 ? 0.0227 ? -0.0207 ? 0.1596 ? -0.0096 ? 0.1415 ? 0.6279 ? -0.1742 ? 0.2441 ? 1.5545 ? -0.1582 ? 1.3280 ? 0.0149 ? 0.1168 ? -0.0271 ? -0.2719 ? 0.0351 ? 0.0782 ? -0.0850 ? -0.1866 ? -0.0887 ? 6 'X-RAY DIFFRACTION' ? refined -6.3212 -21.1506 11.9505 0.2068 ? 0.0054 ? -0.0441 ? 0.1651 ? -0.0276 ? 0.1162 ? 0.4876 ? -0.0413 ? 0.4581 ? 0.0452 ? 0.0953 ? 1.6999 ? 0.0954 ? 0.1202 ? -0.0553 ? -0.4114 ? -0.0856 ? 0.0462 ? -0.0707 ? -0.3289 ? 0.0538 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 454 through 493 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 494 through 516 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 517 through 536 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 537 through 558 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 11 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 2 through 11 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 433 ? A GLY 1 2 1 Y 1 A PRO 434 ? A PRO 2 3 1 Y 1 A HIS 435 ? A HIS 3 4 1 Y 1 A MET 436 ? A MET 4 5 1 Y 1 A SER 437 ? A SER 5 6 1 Y 1 A PHE 438 ? A PHE 6 7 1 Y 1 A ALA 439 ? A ALA 7 8 1 Y 1 A VAL 440 ? A VAL 8 9 1 Y 1 A PRO 441 ? A PRO 9 10 1 Y 1 A LEU 442 ? A LEU 10 11 1 Y 1 A VAL 443 ? A VAL 11 12 1 Y 1 A GLN 444 ? A GLN 12 13 1 Y 1 A SER 445 ? A SER 13 14 1 Y 1 A ARG 446 ? A ARG 14 15 1 Y 1 A SER 447 ? A SER 15 16 1 Y 1 A LYS 448 ? A LYS 16 17 1 Y 1 A GLN 449 ? A GLN 17 18 1 Y 1 A LYS 450 ? A LYS 18 19 1 Y 1 A ASP 451 ? A ASP 19 20 1 Y 1 A GLU 452 ? A GLU 20 21 1 Y 1 A MET 453 ? A MET 21 22 1 Y 1 A GLY 559 ? A GLY 127 23 1 Y 1 A THR 560 ? A THR 128 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 ZN ZN ZN N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8YVB 'double helix' 8YVB 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 C DA 10 1_555 -0.132 -0.147 0.278 -3.455 -17.698 3.294 1 B_DT1:DA11_C B 1 ? C 11 ? 20 1 1 B DT 2 1_555 C DA 9 1_555 -0.199 -0.115 -0.163 7.784 -7.894 4.017 2 B_DT2:DA10_C B 2 ? C 10 ? 20 1 1 B DG 3 1_555 C DC 8 1_555 -0.146 -0.262 -0.038 -5.592 -5.621 -1.338 3 B_DG3:DC9_C B 3 ? C 9 ? 19 1 1 B DG 4 1_555 C DC 7 1_555 -0.340 -0.341 0.020 1.985 -10.013 1.734 4 B_DG4:DC8_C B 4 ? C 8 ? 19 1 1 B DT 5 1_555 C DA 6 1_555 0.098 -0.097 -0.191 5.551 -14.791 10.707 5 B_DT5:DA7_C B 5 ? C 7 ? 20 1 1 B DC 6 1_555 C DG 5 1_555 0.334 -0.192 0.221 -16.305 -4.382 1.480 6 B_DC6:DG6_C B 6 ? C 6 ? 19 1 1 B DT 7 1_555 C DA 4 1_555 -0.113 -0.144 0.065 -4.530 6.806 0.592 7 B_DT7:DA5_C B 7 ? C 5 ? 20 1 1 B DG 8 1_555 C DC 3 1_555 0.039 -0.222 0.726 9.157 -14.418 -3.514 8 B_DG8:DC4_C B 8 ? C 4 ? 19 1 1 B DC 9 1_555 C DG 2 1_555 0.209 -0.096 -0.001 5.499 -3.072 -0.053 9 B_DC9:DG3_C B 9 ? C 3 ? 19 1 1 B DA 11 1_555 C DA 1 1_555 6.065 -5.040 0.102 40.943 -9.253 176.812 10 B_DA11:DA2_C B 11 ? C 2 ? 2 7 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 C DA 10 1_555 B DT 2 1_555 C DA 9 1_555 0.068 -0.086 2.960 3.935 7.240 35.089 -1.070 0.396 2.877 11.809 -6.417 36.014 1 BB_DT1DT2:DA10DA11_CC B 1 ? C 11 ? B 2 ? C 10 ? 1 B DT 2 1_555 C DA 9 1_555 B DG 3 1_555 C DC 8 1_555 -0.218 -0.240 3.596 -2.463 4.236 39.189 -0.904 0.005 3.558 6.285 3.655 39.482 2 BB_DT2DG3:DC9DA10_CC B 2 ? C 10 ? B 3 ? C 9 ? 1 B DG 3 1_555 C DC 8 1_555 B DG 4 1_555 C DC 7 1_555 -0.106 -0.369 3.127 -3.053 10.111 30.360 -2.378 -0.324 2.858 18.614 5.620 32.104 3 BB_DG3DG4:DC8DC9_CC B 3 ? C 9 ? B 4 ? C 8 ? 1 B DG 4 1_555 C DC 7 1_555 B DT 5 1_555 C DA 6 1_555 0.990 -0.771 3.177 1.105 5.557 31.889 -2.320 -1.590 3.034 10.015 -1.992 32.375 4 BB_DG4DT5:DA7DC8_CC B 4 ? C 8 ? B 5 ? C 7 ? 1 B DT 5 1_555 C DA 6 1_555 B DC 6 1_555 C DG 5 1_555 -0.356 -1.522 3.780 -2.021 6.402 32.140 -3.919 0.244 3.436 11.409 3.601 32.815 5 BB_DT5DC6:DG6DA7_CC B 5 ? C 7 ? B 6 ? C 6 ? 1 B DC 6 1_555 C DG 5 1_555 B DT 7 1_555 C DA 4 1_555 0.273 -0.104 3.097 4.405 5.413 30.757 -1.151 0.277 3.043 10.044 -8.174 31.521 6 BB_DC6DT7:DA5DG6_CC B 6 ? C 6 ? B 7 ? C 5 ? 1 B DT 7 1_555 C DA 4 1_555 B DG 8 1_555 C DC 3 1_555 -1.819 1.346 3.071 -4.208 -2.179 35.618 2.481 2.373 3.173 -3.543 6.842 35.922 7 BB_DT7DG8:DC4DA5_CC B 7 ? C 5 ? B 8 ? C 4 ? 1 B DG 8 1_555 C DC 3 1_555 B DC 9 1_555 C DG 2 1_555 1.068 0.853 3.530 7.936 -5.845 40.802 1.858 -0.588 3.519 -8.239 -11.186 41.926 8 BB_DG8DC9:DG3DC4_CC B 8 ? C 4 ? B 9 ? C 3 ? 1 B DC 9 1_555 C DG 2 1_555 B DA 11 1_555 C DA 1 1_555 -0.466 -3.453 0.660 -166.228 52.648 117.084 -1.766 0.111 0.251 26.449 83.508 177.061 9 BB_DC9DA11:DA2DG3_CC B 9 ? C 3 ? B 11 ? C 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China (NSFC)' China 32371282 1 'National Natural Science Foundation of China (NSFC)' China 32171222 2 # _atom_sites.entry_id 8YVB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.017932 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009846 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S ZN # loop_ # loop_ #