HEADER VIRAL PROTEIN/DNA 31-MAR-24 8YWI TITLE THE STRUCTURE OF ASFV DNA POLYMERASE IN REPLICATING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THE PRIMER STRAND; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: THE TEMPLATE STRAND; COMPND 12 CHAIN: T; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: ASFV; SOURCE 4 ORGANISM_TAXID: 10497; SOURCE 5 GENE: G1211R CDS, G1211R, ASFV-GEORGIA_4-114; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 11 ORGANISM_COMMON: ASFV; SOURCE 12 ORGANISM_TAXID: 10497; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 16 ORGANISM_COMMON: ASFV; SOURCE 17 ORGANISM_TAXID: 10497 KEYWDS DNA POLYMERASE, VIRAL PROTEIN/DNA, VIRAL PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR L.KUAI,J.Q.SUN,Q.PENG,Y.SHI REVDAT 2 23-JUL-25 8YWI 1 REMARK REVDAT 1 05-FEB-25 8YWI 0 JRNL AUTH L.KUAI,J.SUN,Q.PENG,X.ZHAO,B.YUAN,S.LIU,Y.BI,Y.SHI JRNL TITL CRYO-EM STRUCTURE OF DNA POLYMERASE OF AFRICAN SWINE FEVER JRNL TITL 2 VIRUS. JRNL REF NUCLEIC ACIDS RES. V. 52 10717 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39189451 JRNL DOI 10.1093/NAR/GKAE739 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.700 REMARK 3 NUMBER OF PARTICLES : 290488 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8YWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046521. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THE ASFV DNA POLYMERASE IN REMARK 245 REPLICATING STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLN A 908 REMARK 465 PHE A 909 REMARK 465 ASP A 910 REMARK 465 ILE A 911 REMARK 465 GLN A 912 REMARK 465 GLY A 913 REMARK 465 HIS A 914 REMARK 465 ARG A 915 REMARK 465 THR A 916 REMARK 465 ASP A 917 REMARK 465 LYS A 993 REMARK 465 ASP A 994 REMARK 465 LYS A 995 REMARK 465 SER A 996 REMARK 465 VAL A 997 REMARK 465 ILE A 998 REMARK 465 LYS A 999 REMARK 465 GLN A 1000 REMARK 465 GLY A 1001 REMARK 465 ASN A 1002 REMARK 465 VAL A 1003 REMARK 465 HIS A 1004 REMARK 465 ARG A 1005 REMARK 465 GLN A 1006 REMARK 465 CYS A 1007 REMARK 465 TYR A 1008 REMARK 465 LYS A 1009 REMARK 465 TYR A 1010 REMARK 465 ILE A 1011 REMARK 465 HIS A 1012 REMARK 465 GLN A 1013 REMARK 465 GLU A 1014 REMARK 465 ILE A 1015 REMARK 465 LYS A 1016 REMARK 465 LYS A 1017 REMARK 465 LYS A 1018 REMARK 465 ILE A 1019 REMARK 465 GLY A 1020 REMARK 465 ILE A 1021 REMARK 465 PHE A 1022 REMARK 465 ALA A 1023 REMARK 465 ASP A 1024 REMARK 465 LEU A 1025 REMARK 465 TYR A 1026 REMARK 465 LYS A 1027 REMARK 465 GLU A 1028 REMARK 465 PHE A 1029 REMARK 465 PHE A 1030 REMARK 465 ASN A 1031 REMARK 465 ASN A 1032 REMARK 465 THR A 1033 REMARK 465 THR A 1034 REMARK 465 ASN A 1035 REMARK 465 PRO A 1036 REMARK 465 ILE A 1037 REMARK 465 GLU A 1038 REMARK 465 SER A 1039 REMARK 465 PHE A 1040 REMARK 465 ILE A 1041 REMARK 465 GLN A 1042 REMARK 465 SER A 1043 REMARK 465 THR A 1044 REMARK 465 GLN A 1045 REMARK 465 PHE A 1046 REMARK 465 MET A 1047 REMARK 465 ILE A 1048 REMARK 465 GLN A 1049 REMARK 465 TYR A 1050 REMARK 465 PHE A 1051 REMARK 465 ASP A 1052 REMARK 465 GLY A 1053 REMARK 465 GLU A 1054 REMARK 465 GLN A 1055 REMARK 465 LYS A 1056 REMARK 465 VAL A 1057 REMARK 465 ASN A 1058 REMARK 465 HIS A 1059 REMARK 465 SER A 1060 REMARK 465 MET A 1061 REMARK 465 LYS A 1062 REMARK 465 LYS A 1063 REMARK 465 MET A 1064 REMARK 465 VAL A 1065 REMARK 465 GLU A 1066 REMARK 465 GLN A 1067 REMARK 465 HIS A 1068 REMARK 465 ALA A 1069 REMARK 465 THR A 1070 REMARK 465 ALA A 1071 REMARK 465 SER A 1072 REMARK 465 ASN A 1073 REMARK 465 ARG A 1074 REMARK 465 ALA A 1075 REMARK 465 GLY A 1076 REMARK 465 LYS A 1077 REMARK 465 PRO A 1078 REMARK 465 ALA A 1079 REMARK 465 GLY A 1080 REMARK 465 ASN A 1081 REMARK 465 PRO A 1082 REMARK 465 ALA A 1083 REMARK 465 GLY A 1084 REMARK 465 ASN A 1085 REMARK 465 ALA A 1086 REMARK 465 LEU A 1087 REMARK 465 MET A 1088 REMARK 465 ARG A 1089 REMARK 465 ALA A 1090 REMARK 465 ILE A 1091 REMARK 465 PHE A 1092 REMARK 465 THR A 1093 REMARK 465 GLN A 1094 REMARK 465 LEU A 1095 REMARK 465 ILE A 1096 REMARK 465 THR A 1097 REMARK 465 GLU A 1098 REMARK 465 GLU A 1099 REMARK 465 LYS A 1100 REMARK 465 LYS A 1101 REMARK 465 ILE A 1102 REMARK 465 VAL A 1103 REMARK 465 GLN A 1104 REMARK 465 ALA A 1105 REMARK 465 LEU A 1106 REMARK 465 TYR A 1107 REMARK 465 ASN A 1108 REMARK 465 LYS A 1109 REMARK 465 GLY A 1110 REMARK 465 ASP A 1111 REMARK 465 ALA A 1112 REMARK 465 ILE A 1113 REMARK 465 HIS A 1114 REMARK 465 ASP A 1115 REMARK 465 LEU A 1116 REMARK 465 LEU A 1117 REMARK 465 THR A 1118 REMARK 465 TYR A 1119 REMARK 465 ILE A 1120 REMARK 465 ILE A 1121 REMARK 465 ASN A 1122 REMARK 465 ASN A 1123 REMARK 465 ILE A 1124 REMARK 465 ASN A 1125 REMARK 465 TYR A 1126 REMARK 465 LYS A 1127 REMARK 465 ILE A 1128 REMARK 465 ALA A 1129 REMARK 465 THR A 1130 REMARK 465 PHE A 1131 REMARK 465 GLN A 1132 REMARK 465 THR A 1133 REMARK 465 LYS A 1134 REMARK 465 GLN A 1135 REMARK 465 MET A 1136 REMARK 465 LEU A 1137 REMARK 465 THR A 1138 REMARK 465 PHE A 1139 REMARK 465 GLU A 1140 REMARK 465 PHE A 1141 REMARK 465 SER A 1142 REMARK 465 SER A 1143 REMARK 465 THR A 1144 REMARK 465 HIS A 1145 REMARK 465 VAL A 1146 REMARK 465 GLU A 1147 REMARK 465 LEU A 1148 REMARK 465 LEU A 1149 REMARK 465 LEU A 1150 REMARK 465 LYS A 1151 REMARK 465 LEU A 1152 REMARK 465 ASN A 1153 REMARK 465 LYS A 1154 REMARK 465 THR A 1155 REMARK 465 TRP A 1156 REMARK 465 LEU A 1157 REMARK 465 ILE A 1158 REMARK 465 LEU A 1159 REMARK 465 ALA A 1160 REMARK 465 GLY A 1161 REMARK 465 ILE A 1162 REMARK 465 HIS A 1163 REMARK 465 VAL A 1164 REMARK 465 ALA A 1165 REMARK 465 LYS A 1166 REMARK 465 LYS A 1167 REMARK 465 HIS A 1168 REMARK 465 LEU A 1169 REMARK 465 GLN A 1170 REMARK 465 ALA A 1171 REMARK 465 PHE A 1172 REMARK 465 LEU A 1173 REMARK 465 ASP A 1174 REMARK 465 SER A 1175 REMARK 465 TYR A 1176 REMARK 465 ASN A 1177 REMARK 465 ASN A 1178 REMARK 465 GLU A 1179 REMARK 465 SER A 1180 REMARK 465 PRO A 1181 REMARK 465 SER A 1182 REMARK 465 ARG A 1183 REMARK 465 THR A 1184 REMARK 465 PHE A 1185 REMARK 465 ILE A 1186 REMARK 465 GLN A 1187 REMARK 465 GLN A 1188 REMARK 465 ALA A 1189 REMARK 465 ILE A 1190 REMARK 465 GLU A 1191 REMARK 465 GLU A 1192 REMARK 465 GLU A 1193 REMARK 465 CYS A 1194 REMARK 465 GLY A 1195 REMARK 465 SER A 1196 REMARK 465 ILE A 1197 REMARK 465 LYS A 1198 REMARK 465 PRO A 1199 REMARK 465 SER A 1200 REMARK 465 CYS A 1201 REMARK 465 TYR A 1202 REMARK 465 ASP A 1203 REMARK 465 PHE A 1204 REMARK 465 ILE A 1205 REMARK 465 SER A 1206 REMARK 465 DA P 1 REMARK 465 DG P 2 REMARK 465 DC P 3 REMARK 465 DT P 4 REMARK 465 DA P 5 REMARK 465 DT P 6 REMARK 465 DG P 7 REMARK 465 DA P 8 REMARK 465 DC P 9 REMARK 465 DC P 10 REMARK 465 DA P 11 REMARK 465 DC T -9 REMARK 465 DT T -8 REMARK 465 DG T -7 REMARK 465 DC T -6 REMARK 465 DA T -5 REMARK 465 DC T -4 REMARK 465 DG T -3 REMARK 465 DT T 18 REMARK 465 DG T 19 REMARK 465 DG T 20 REMARK 465 DT T 21 REMARK 465 DC T 22 REMARK 465 DA T 23 REMARK 465 DT T 24 REMARK 465 DA T 25 REMARK 465 DG T 26 REMARK 465 DC T 27 REMARK 465 DT T 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 378 CG CD OE1 OE2 REMARK 470 DC P 25 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 66.73 60.08 REMARK 500 ILE A 37 -56.31 -126.54 REMARK 500 ILE A 76 -122.72 25.16 REMARK 500 GLU A 98 -60.14 -93.90 REMARK 500 SER A 128 142.13 70.73 REMARK 500 ALA A 148 -94.62 56.28 REMARK 500 ASP A 149 60.99 61.89 REMARK 500 LEU A 193 -141.37 68.56 REMARK 500 VAL A 194 156.11 112.04 REMARK 500 PRO A 201 -175.95 -68.68 REMARK 500 ASP A 203 144.56 69.22 REMARK 500 ALA A 228 -168.14 -78.51 REMARK 500 ASN A 229 -118.52 54.99 REMARK 500 ASP A 230 -113.91 49.40 REMARK 500 VAL A 231 147.98 110.21 REMARK 500 LYS A 394 61.99 62.60 REMARK 500 ALA A 498 173.92 61.74 REMARK 500 ASN A 573 48.19 33.38 REMARK 500 PHE A 652 35.28 -99.91 REMARK 500 THR A 688 -67.99 60.77 REMARK 500 VAL A 777 -61.96 -103.32 REMARK 500 PHE A 788 -95.12 56.65 REMARK 500 ILE A 789 127.00 74.36 REMARK 500 ASP A 793 -6.31 73.82 REMARK 500 PHE A 847 48.71 -84.68 REMARK 500 ASN A 862 176.39 58.12 REMARK 500 LYS A 863 -35.50 -130.62 REMARK 500 ASN A 935 -80.30 60.64 REMARK 500 LEU A 936 76.28 53.60 REMARK 500 PRO A 965 -177.25 -69.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 517 OD2 REMARK 620 2 PHE A 518 O 107.3 REMARK 620 3 ASP A 689 OD2 114.2 88.9 REMARK 620 4 TTP T1101 O1A 129.2 119.0 51.3 REMARK 620 5 TTP T1101 O3G 98.2 82.5 147.6 107.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39634 RELATED DB: EMDB REMARK 900 THE STRUCTURE OF ASFV DNA POLYMERASE IN REPLICATING STATE DBREF1 8YWI A 1 1206 UNP A0A2X0SE14_ASF DBREF2 8YWI A A0A2X0SE14 1 1206 DBREF 8YWI P 1 25 PDB 8YWI 8YWI 1 25 DBREF 8YWI T -9 28 PDB 8YWI 8YWI -9 28 SEQRES 1 A 1206 MET ILE SER ILE MET ASP ARG SER GLU ILE VAL ALA ARG SEQRES 2 A 1206 GLU ASN PRO VAL ILE THR GLN ARG VAL THR ASN LEU LEU SEQRES 3 A 1206 GLN THR ASN ALA PRO LEU LEU PHE MET PRO ILE ASP ILE SEQRES 4 A 1206 HIS GLU VAL ARG TYR GLY ALA TYR THR LEU PHE MET TYR SEQRES 5 A 1206 GLY SER LEU GLU ASN GLY TYR LYS ALA GLU VAL ARG ILE SEQRES 6 A 1206 GLU ASN ILE PRO VAL PHE PHE ASP VAL GLN ILE GLU PHE SEQRES 7 A 1206 ASN ASP THR ASN GLN LEU PHE LEU LYS SER LEU LEU THR SEQRES 8 A 1206 ALA GLU ASN ILE VAL TYR GLU ARG LEU GLU THR LEU THR SEQRES 9 A 1206 GLN ARG PRO VAL MET GLY TYR ARG GLU LYS GLU LYS GLU SEQRES 10 A 1206 PHE ALA PRO TYR ILE ARG ILE PHE PHE LYS SER LEU TYR SEQRES 11 A 1206 GLU ARG ARG LYS ALA ILE THR TYR LEU ASN ASN MET GLY SEQRES 12 A 1206 TYR ASN THR ALA ALA ASP ASP THR THR CYS TYR TYR ARG SEQRES 13 A 1206 MET VAL SER ARG GLU LEU LYS LEU PRO LEU THR SER TRP SEQRES 14 A 1206 ILE GLN LEU GLN HIS TYR SER TYR GLU PRO ARG GLY LEU SEQRES 15 A 1206 VAL HIS ARG PHE SER VAL THR PRO GLU ASP LEU VAL SER SEQRES 16 A 1206 TYR GLN ASN ASP GLY PRO THR ASP HIS SER ILE VAL MET SEQRES 17 A 1206 ALA TYR ASP ILE GLU THR TYR SER PRO VAL LYS GLY THR SEQRES 18 A 1206 VAL PRO ASP PRO ASN GLN ALA ASN ASP VAL VAL PHE MET SEQRES 19 A 1206 ILE CYS MET ARG ILE PHE TRP ILE HIS SER THR GLU PRO SEQRES 20 A 1206 LEU ALA SER THR CYS ILE THR MET ALA PRO CYS LYS LYS SEQRES 21 A 1206 SER SER GLU TRP THR THR ILE LEU CYS SER SER GLU LYS SEQRES 22 A 1206 ASN LEU LEU LEU SER PHE ALA GLU GLN PHE SER ARG TRP SEQRES 23 A 1206 ALA PRO ASP ILE CYS THR GLY PHE ASN ASP SER ARG TYR SEQRES 24 A 1206 ASP TRP PRO PHE ILE VAL GLU LYS SER MET GLN HIS GLY SEQRES 25 A 1206 ILE LEU GLU GLU ILE PHE ASN LYS MET SER LEU PHE TRP SEQRES 26 A 1206 HIS GLN LYS LEU ASP THR ILE LEU LYS CYS TYR TYR VAL SEQRES 27 A 1206 LYS GLU LYS ARG VAL LYS ILE SER ALA GLU LYS SER ILE SEQRES 28 A 1206 ILE SER SER PHE LEU HIS THR PRO GLY CYS LEU PRO ILE SEQRES 29 A 1206 ASP VAL ARG ASN MET CYS MET GLN LEU TYR PRO LYS ALA SEQRES 30 A 1206 GLU LYS THR SER LEU LYS ALA PHE LEU GLU ASN CYS GLY SEQRES 31 A 1206 LEU ASP SER LYS VAL ASP LEU PRO TYR HIS LEU MET TRP SEQRES 32 A 1206 LYS TYR TYR GLU THR ARG ASP SER GLU LYS ILE ALA ASP SEQRES 33 A 1206 VAL ALA TYR TYR CYS ILE ILE ASP ALA GLN ARG CYS GLN SEQRES 34 A 1206 ASP LEU LEU VAL ARG HIS ASN VAL ILE PRO ASP ARG ARG SEQRES 35 A 1206 GLU VAL GLY ILE LEU SER TYR THR SER LEU TYR ASP CYS SEQRES 36 A 1206 ILE TYR TYR ALA GLY GLY HIS LYS VAL CYS ASN MET LEU SEQRES 37 A 1206 ILE ALA TYR ALA ILE HIS ASP GLU TYR GLY ARG ILE ALA SEQRES 38 A 1206 CYS SER THR ILE ALA ARG GLY LYS ARG GLU HIS GLY LYS SEQRES 39 A 1206 TYR PRO GLY ALA PHE VAL ILE ASP PRO VAL LYS GLY LEU SEQRES 40 A 1206 GLU GLN ASP LYS PRO THR THR GLY LEU ASP PHE ALA SER SEQRES 41 A 1206 LEU TYR PRO SER LEU ILE MET ALA TYR ASN PHE SER PRO SEQRES 42 A 1206 GLU LYS PHE VAL ALA SER ARG ASP GLU ALA ASN SER LEU SEQRES 43 A 1206 MET ALA LYS GLY GLU SER LEU HIS TYR VAL SER PHE HIS SEQRES 44 A 1206 PHE ASN ASN ARG LEU VAL GLU GLY TRP PHE VAL ARG HIS SEQRES 45 A 1206 ASN ASN VAL PRO ASP LYS MET GLY LEU TYR PRO LYS VAL SEQRES 46 A 1206 LEU ILE ASP LEU LEU ASN LYS ARG THR ALA LEU LYS GLN SEQRES 47 A 1206 GLU LEU LYS LYS LEU GLY GLU LYS LYS GLU CYS ILE HIS SEQRES 48 A 1206 GLU SER HIS PRO GLY PHE LYS GLU LEU GLN PHE ARG HIS SEQRES 49 A 1206 ALA MET VAL ASP ALA LYS GLN LYS ALA LEU LYS ILE PHE SEQRES 50 A 1206 MET ASN THR PHE TYR GLY GLU ALA GLY ASN ASN LEU SER SEQRES 51 A 1206 PRO PHE PHE LEU LEU PRO LEU ALA GLY GLY VAL THR SER SEQRES 52 A 1206 SER GLY GLN TYR ASN LEU LYS LEU VAL TYR ASN PHE VAL SEQRES 53 A 1206 ILE ASN LYS GLY TYR GLY ILE LYS TYR GLY ASP THR ASP SEQRES 54 A 1206 SER LEU TYR ILE THR CYS PRO ASP SER LEU TYR THR GLU SEQRES 55 A 1206 VAL THR ASP ALA TYR LEU ASN SER GLN LYS THR ILE LYS SEQRES 56 A 1206 HIS TYR GLU GLN LEU CYS HIS GLU LYS VAL LEU LEU SER SEQRES 57 A 1206 MET LYS ALA MET SER THR LEU CYS ALA GLU VAL ASN GLU SEQRES 58 A 1206 TYR LEU ARG GLN ASP ASN GLY THR SER TYR LEU ARG MET SEQRES 59 A 1206 ALA TYR GLU GLU VAL LEU PHE PRO VAL CYS PHE THR GLY SEQRES 60 A 1206 LYS LYS LYS TYR TYR GLY ILE ALA HIS VAL ASN THR PRO SEQRES 61 A 1206 ASN PHE ASN THR LYS GLU LEU PHE ILE ARG GLY ILE ASP SEQRES 62 A 1206 ILE ILE LYS GLN GLY GLN THR LYS LEU THR LYS THR ILE SEQRES 63 A 1206 GLY THR ARG ILE MET GLU GLU SER MET LYS LEU ARG ARG SEQRES 64 A 1206 PRO GLU ASP HIS ARG PRO PRO LEU ILE GLU ILE VAL LYS SEQRES 65 A 1206 THR VAL LEU LYS ASP ALA VAL VAL ASN MET LYS GLN TRP SEQRES 66 A 1206 ASN PHE GLU ASP PHE ILE GLN THR ASP ALA TRP ARG PRO SEQRES 67 A 1206 ASP LYS ASP ASN LYS ALA VAL GLN ILE PHE MET SER ARG SEQRES 68 A 1206 MET HIS ALA ARG ARG GLU GLN LEU LYS LYS HIS GLY ALA SEQRES 69 A 1206 ALA ALA SER GLN PHE ALA GLU PRO GLU PRO GLY GLU ARG SEQRES 70 A 1206 PHE SER TYR VAL ILE VAL GLU LYS GLN VAL GLN PHE ASP SEQRES 71 A 1206 ILE GLN GLY HIS ARG THR ASP SER SER ARG LYS GLY ASP SEQRES 72 A 1206 LYS MET GLU TYR VAL SER GLU ALA LYS ALA LYS ASN LEU SEQRES 73 A 1206 PRO ILE ASP ILE LEU PHE TYR ILE ASN ASN TYR VAL LEU SEQRES 74 A 1206 GLY LEU CYS ALA ARG PHE ILE ASN GLU ASN GLU GLU PHE SEQRES 75 A 1206 GLN PRO PRO ASP ASN VAL SER ASN LYS ASP GLU TYR ALA SEQRES 76 A 1206 GLN ARG ARG ALA LYS SER TYR LEU GLN LYS PHE VAL GLN SEQRES 77 A 1206 SER ILE HIS PRO LYS ASP LYS SER VAL ILE LYS GLN GLY SEQRES 78 A 1206 ASN VAL HIS ARG GLN CYS TYR LYS TYR ILE HIS GLN GLU SEQRES 79 A 1206 ILE LYS LYS LYS ILE GLY ILE PHE ALA ASP LEU TYR LYS SEQRES 80 A 1206 GLU PHE PHE ASN ASN THR THR ASN PRO ILE GLU SER PHE SEQRES 81 A 1206 ILE GLN SER THR GLN PHE MET ILE GLN TYR PHE ASP GLY SEQRES 82 A 1206 GLU GLN LYS VAL ASN HIS SER MET LYS LYS MET VAL GLU SEQRES 83 A 1206 GLN HIS ALA THR ALA SER ASN ARG ALA GLY LYS PRO ALA SEQRES 84 A 1206 GLY ASN PRO ALA GLY ASN ALA LEU MET ARG ALA ILE PHE SEQRES 85 A 1206 THR GLN LEU ILE THR GLU GLU LYS LYS ILE VAL GLN ALA SEQRES 86 A 1206 LEU TYR ASN LYS GLY ASP ALA ILE HIS ASP LEU LEU THR SEQRES 87 A 1206 TYR ILE ILE ASN ASN ILE ASN TYR LYS ILE ALA THR PHE SEQRES 88 A 1206 GLN THR LYS GLN MET LEU THR PHE GLU PHE SER SER THR SEQRES 89 A 1206 HIS VAL GLU LEU LEU LEU LYS LEU ASN LYS THR TRP LEU SEQRES 90 A 1206 ILE LEU ALA GLY ILE HIS VAL ALA LYS LYS HIS LEU GLN SEQRES 91 A 1206 ALA PHE LEU ASP SER TYR ASN ASN GLU SER PRO SER ARG SEQRES 92 A 1206 THR PHE ILE GLN GLN ALA ILE GLU GLU GLU CYS GLY SER SEQRES 93 A 1206 ILE LYS PRO SER CYS TYR ASP PHE ILE SER SEQRES 1 P 25 DA DG DC DT DA DT DG DA DC DC DA DT DG SEQRES 2 P 25 DA DT DT DA DC DG DA DA DT DT DG DC SEQRES 1 T 38 DC DT DG DC DA DC DG DA DA DT DT DA DA SEQRES 2 T 38 DG DC DA DA DT DT DC DG DT DA DA DT DC SEQRES 3 T 38 DA DT DG DG DT DC DA DT DA DG DC DT HET MG A1301 1 HET TTP T1101 29 HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 4 MG MG 2+ FORMUL 5 TTP C10 H17 N2 O14 P3 HELIX 1 AA1 ASP A 6 ASN A 15 1 10 HELIX 2 AA2 ASN A 15 ASN A 29 1 15 HELIX 3 AA3 ASN A 79 GLU A 93 1 15 HELIX 4 AA4 GLU A 113 GLU A 117 5 5 HELIX 5 AA5 SER A 128 GLY A 143 1 16 HELIX 6 AA6 TYR A 154 LYS A 163 1 10 HELIX 7 AA7 SER A 271 ALA A 287 1 17 HELIX 8 AA8 TYR A 299 GLY A 312 1 14 HELIX 9 AA9 ILE A 313 SER A 322 1 10 HELIX 10 AB1 LYS A 328 CYS A 335 1 8 HELIX 11 AB2 VAL A 366 TYR A 374 1 9 HELIX 12 AB3 SER A 381 CYS A 389 1 9 HELIX 13 AB4 PRO A 398 ARG A 409 1 12 HELIX 14 AB5 ASP A 410 ASN A 436 1 27 HELIX 15 AB6 ASN A 436 TYR A 449 1 14 HELIX 16 AB7 SER A 451 TYR A 458 1 8 HELIX 17 AB8 GLY A 460 HIS A 474 1 15 HELIX 18 AB9 SER A 520 ASN A 530 1 11 HELIX 19 AC1 SER A 532 GLU A 534 5 3 HELIX 20 AC2 SER A 539 GLY A 550 1 12 HELIX 21 AC3 GLY A 580 CYS A 609 1 30 HELIX 22 AC4 GLY A 616 GLY A 646 1 31 HELIX 23 AC5 LEU A 654 ASN A 678 1 25 HELIX 24 AC6 TYR A 700 ASN A 709 1 10 HELIX 25 AC7 THR A 713 GLY A 748 1 36 HELIX 26 AC8 THR A 800 SER A 814 1 15 HELIX 27 AC9 PRO A 826 VAL A 840 1 15 HELIX 28 AD1 ASN A 841 TRP A 845 5 5 HELIX 29 AD2 ALA A 864 GLY A 883 1 20 HELIX 30 AD3 ALA A 886 ALA A 890 5 5 HELIX 31 AD4 VAL A 928 LYS A 934 1 7 HELIX 32 AD5 ASP A 939 ILE A 956 1 18 HELIX 33 AD6 ASN A 959 GLN A 963 5 5 HELIX 34 AD7 ASN A 970 HIS A 991 1 22 SHEET 1 AA1 6 ILE A 170 LEU A 172 0 SHEET 2 AA1 6 LEU A 32 GLU A 41 -1 N PHE A 34 O ILE A 170 SHEET 3 AA1 6 LEU A 49 SER A 54 -1 O PHE A 50 N HIS A 40 SHEET 4 AA1 6 LYS A 60 ILE A 65 -1 O ALA A 61 N GLY A 53 SHEET 5 AA1 6 VAL A 183 VAL A 188 1 O PHE A 186 N ARG A 64 SHEET 6 AA1 6 SER A 176 ARG A 180 -1 N SER A 176 O SER A 187 SHEET 1 AA2 4 PHE A 71 VAL A 74 0 SHEET 2 AA2 4 ALA A 119 PHE A 125 -1 O ILE A 124 N PHE A 72 SHEET 3 AA2 4 LEU A 100 PRO A 107 -1 N GLN A 105 O ALA A 119 SHEET 4 AA2 4 ILE A 480 ALA A 481 1 O ALA A 481 N ARG A 106 SHEET 1 AA3 6 THR A 265 LEU A 268 0 SHEET 2 AA3 6 ALA A 249 THR A 254 1 N CYS A 252 O THR A 265 SHEET 3 AA3 6 VAL A 232 PHE A 240 -1 N ILE A 235 O ILE A 253 SHEET 4 AA3 6 VAL A 207 THR A 214 -1 N ASP A 211 O CYS A 236 SHEET 5 AA3 6 ILE A 290 GLY A 293 1 O ILE A 290 N MET A 208 SHEET 6 AA3 6 LEU A 362 ASP A 365 1 O LEU A 362 N CYS A 291 SHEET 1 AA4 2 TYR A 337 SER A 346 0 SHEET 2 AA4 2 LYS A 349 LEU A 356 -1 O SER A 353 N LYS A 341 SHEET 1 AA5 5 GLY A 506 GLU A 508 0 SHEET 2 AA5 5 MET A 754 GLY A 767 -1 O PHE A 765 N GLY A 506 SHEET 3 AA5 5 THR A 513 PHE A 518 -1 N THR A 513 O LEU A 760 SHEET 4 AA5 5 SER A 690 THR A 694 -1 O ILE A 693 N THR A 514 SHEET 5 AA5 5 GLY A 682 ASP A 687 -1 N GLY A 682 O THR A 694 SHEET 1 AA6 3 GLY A 506 GLU A 508 0 SHEET 2 AA6 3 MET A 754 GLY A 767 -1 O PHE A 765 N GLY A 506 SHEET 3 AA6 3 LYS A 770 HIS A 776 -1 O HIS A 776 N VAL A 759 SHEET 1 AA7 3 PHE A 536 VAL A 537 0 SHEET 2 AA7 3 LEU A 564 VAL A 570 -1 O TRP A 568 N VAL A 537 SHEET 3 AA7 3 LEU A 553 HIS A 559 -1 N VAL A 556 O GLY A 567 SHEET 1 AA8 3 GLN A 852 ALA A 855 0 SHEET 2 AA8 3 ARG A 897 ILE A 902 -1 O PHE A 898 N ASP A 854 SHEET 3 AA8 3 MET A 925 TYR A 927 -1 O GLU A 926 N VAL A 901 LINK OD2 ASP A 517 MG MG A1301 1555 1555 2.21 LINK O PHE A 518 MG MG A1301 1555 1555 2.31 LINK OD2 ASP A 689 MG MG A1301 1555 1555 2.60 LINK MG MG A1301 O1A TTP T1101 1555 1555 2.51 LINK MG MG A1301 O3G TTP T1101 1555 1555 2.41 CISPEP 1 PHE A 761 PRO A 762 0 -3.75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 7984 PRO A 992 TER 8272 DC P 25 TER 8683 DA T 17 HETATM 8684 MG MG A1301 139.541 112.622 125.641 1.00 50.96 MG HETATM 8685 PA TTP T1101 136.362 113.929 124.439 1.00 53.96 P HETATM 8686 O1A TTP T1101 137.317 112.781 124.493 1.00 53.96 O HETATM 8687 O2A TTP T1101 135.240 113.995 125.421 1.00 53.96 O HETATM 8688 O3A TTP T1101 137.231 115.268 124.550 1.00 53.96 O HETATM 8689 PB TTP T1101 138.395 115.821 123.603 1.00 53.96 P HETATM 8690 O1B TTP T1101 139.249 114.674 123.176 1.00 53.96 O HETATM 8691 O2B TTP T1101 137.805 116.730 122.579 1.00 53.96 O HETATM 8692 O3B TTP T1101 139.224 116.677 124.668 1.00 53.96 O HETATM 8693 PG TTP T1101 139.736 116.265 126.137 1.00 53.96 P HETATM 8694 O1G TTP T1101 140.766 117.295 126.522 1.00 53.96 O HETATM 8695 O2G TTP T1101 138.517 116.308 127.022 1.00 53.96 O HETATM 8696 O3G TTP T1101 140.308 114.873 126.000 1.00 53.96 O HETATM 8697 O5' TTP T1101 135.784 114.091 122.952 1.00 53.96 O HETATM 8698 C5' TTP T1101 135.421 112.910 122.198 1.00 53.96 C HETATM 8699 C4' TTP T1101 134.702 113.327 120.939 1.00 53.96 C HETATM 8700 O4' TTP T1101 133.341 113.695 121.239 1.00 53.96 O HETATM 8701 C3' TTP T1101 135.246 114.570 120.252 1.00 53.96 C HETATM 8702 O3' TTP T1101 136.432 114.308 119.509 1.00 53.96 O HETATM 8703 C2' TTP T1101 134.071 114.950 119.362 1.00 53.96 C HETATM 8704 C1' TTP T1101 132.858 114.523 120.188 1.00 53.96 C HETATM 8705 N1 TTP T1101 132.106 115.633 120.806 1.00 53.96 N HETATM 8706 C2 TTP T1101 131.253 116.368 120.010 1.00 53.96 C HETATM 8707 O2 TTP T1101 131.106 116.149 118.815 1.00 53.96 O HETATM 8708 N3 TTP T1101 130.585 117.377 120.658 1.00 53.96 N HETATM 8709 C4 TTP T1101 130.677 117.709 121.997 1.00 53.96 C HETATM 8710 O4 TTP T1101 130.010 118.646 122.443 1.00 53.96 O HETATM 8711 C5 TTP T1101 131.581 116.893 122.774 1.00 53.96 C HETATM 8712 C5M TTP T1101 131.740 117.189 124.236 1.00 53.96 C HETATM 8713 C6 TTP T1101 132.242 115.905 122.151 1.00 53.96 C CONECT 4197 8684 CONECT 4201 8684 CONECT 5582 8684 CONECT 8684 4197 4201 5582 8686 CONECT 8684 8696 CONECT 8685 8686 8687 8688 8697 CONECT 8686 8684 8685 CONECT 8687 8685 CONECT 8688 8685 8689 CONECT 8689 8688 8690 8691 8692 CONECT 8690 8689 CONECT 8691 8689 CONECT 8692 8689 8693 CONECT 8693 8692 8694 8695 8696 CONECT 8694 8693 CONECT 8695 8693 CONECT 8696 8684 8693 CONECT 8697 8685 8698 CONECT 8698 8697 8699 CONECT 8699 8698 8700 8701 CONECT 8700 8699 8704 CONECT 8701 8699 8702 8703 CONECT 8702 8701 CONECT 8703 8701 8704 CONECT 8704 8700 8703 8705 CONECT 8705 8704 8706 8713 CONECT 8706 8705 8707 8708 CONECT 8707 8706 CONECT 8708 8706 8709 CONECT 8709 8708 8710 8711 CONECT 8710 8709 CONECT 8711 8709 8712 8713 CONECT 8712 8711 CONECT 8713 8705 8711 MASTER 430 0 2 34 32 0 0 6 8710 3 34 98 END