HEADER OXIDOREDUCTASE 04-APR-24 8YYP TITLE CRYSTAL STRUCTURE OF PTMB IN COMPLEX WITH CYCLO-(L-TRP-L-TRP) AND TITLE 2 ADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTMB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SEQUENCE REFERENCE FOR KITASATOSPORA MEDICIDICA KCTC COMPND 6 9733 STRAIN (TAX ID 1449347) IS NOT AVAILABLE IN UNIPROT AT THE TIME COMPND 7 OF BIOCURATION. KITASATOSPORA MEDICIDICA KCTC 9733: NCBI REFSEQ COMPND 8 ASSEMBLY IS GCF_000744225.1 AND GENBANK ASSEMBLY IS GCA_000744225.1. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KITASATOSPORA MEDIOCIDICA KCTC 9733; SOURCE 3 ORGANISM_TAXID: 1449347; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P450 OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.Y.ZHANG,X.D.QU,B.R.DUAN,G.Z.WEI REVDAT 1 20-NOV-24 8YYP 0 JRNL AUTH G.WEI,B.DUAN,T.P.ZHOU,W.TIAN,C.SUN,Z.LIN,Z.DENG,B.WANG, JRNL AUTH 2 Z.ZHANG,X.QU JRNL TITL A NUCLEOBASE-DRIVEN P450 PEROXIDASE SYSTEM ENABLES REGIO- JRNL TITL 2 AND STEREO-SPECIFIC FORMATION OF C─C AND C─N JRNL TITL 3 BONDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 90121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 39508763 JRNL DOI 10.1073/PNAS.2412890121 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1439 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : -1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.931 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6400 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6104 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8736 ; 1.637 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13992 ; 1.288 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 786 ; 7.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 386 ;30.552 ;19.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 998 ;17.057 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;18.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 798 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7374 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1492 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3150 ; 3.882 ; 4.189 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3149 ; 3.882 ; 4.189 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3934 ; 5.954 ; 6.277 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3935 ; 5.953 ; 6.276 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3250 ; 3.958 ; 4.460 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3251 ; 3.957 ; 4.461 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4803 ; 6.040 ; 6.574 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7124 ; 8.636 ;49.376 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7090 ; 8.645 ;49.375 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8YYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.15490 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.5 0.2M AMMONIUM REMARK 280 ACETATE 25% PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.68850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.03275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.34425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 PRO A 18 REMARK 465 ASN A 98 REMARK 465 ASN A 99 REMARK 465 MET A 100 REMARK 465 GLY A 101 REMARK 465 ASN A 102 REMARK 465 ILE A 103 REMARK 465 ASN A 104 REMARK 465 PRO A 229 REMARK 465 ASP A 230 REMARK 465 VAL A 231 REMARK 465 SER A 232 REMARK 465 ASP A 233 REMARK 465 GLN A 234 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 ARG B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 VAL B 10 REMARK 465 LEU B 11 REMARK 465 PRO B 12 REMARK 465 GLY B 13 REMARK 465 THR B 14 REMARK 465 ALA B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 PRO B 18 REMARK 465 ASP B 230 REMARK 465 VAL B 231 REMARK 465 SER B 232 REMARK 465 ASP B 233 REMARK 465 GLN B 234 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 229 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 79.85 -151.54 REMARK 500 GLN A 119 35.47 -97.79 REMARK 500 ARG A 122 -81.45 44.27 REMARK 500 PHE A 152 -62.64 -140.72 REMARK 500 PRO A 212 82.47 -69.31 REMARK 500 GLU A 213 134.94 -28.00 REMARK 500 GLU A 216 131.72 88.54 REMARK 500 ASP A 299 -163.45 -117.28 REMARK 500 ALA A 307 159.96 178.45 REMARK 500 ASP A 345 33.46 -141.91 REMARK 500 ASN A 349 72.85 -160.66 REMARK 500 GLN B 43 75.83 -150.13 REMARK 500 ASN B 98 46.91 -104.90 REMARK 500 PHE B 152 -68.47 -136.13 REMARK 500 GLU B 216 131.50 77.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 361 SG REMARK 620 2 HEM A 502 NA 107.0 REMARK 620 3 HEM A 502 NB 101.2 83.4 REMARK 620 4 HEM A 502 NC 100.6 152.4 91.2 REMARK 620 5 HEM A 502 ND 103.9 87.3 154.8 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 361 SG REMARK 620 2 HEM B 502 NA 104.8 REMARK 620 3 HEM B 502 NB 95.4 92.2 REMARK 620 4 HEM B 502 NC 84.7 170.4 87.2 REMARK 620 5 HEM B 502 ND 98.8 91.7 163.8 86.3 REMARK 620 N 1 2 3 4 DBREF 8YYP A 1 412 PDB 8YYP 8YYP 1 412 DBREF 8YYP B 1 412 PDB 8YYP 8YYP 1 412 SEQRES 1 A 412 MET THR THR THR ALA GLN ARG ASP PRO VAL LEU PRO GLY SEQRES 2 A 412 THR ALA HIS HIS PRO PRO LEU PRO ASP PHE PRO LEU SER SEQRES 3 A 412 ARG ARG GLY ASP ILE LEU PRO ALA GLU ALA GLU ARG LEU SEQRES 4 A 412 ARG ALA GLU GLN PRO VAL ALA ARG VAL ARG THR MET THR SEQRES 5 A 412 GLY ASP GLU ALA TRP LEU VAL SER SER TYR GLU LEU ALA SEQRES 6 A 412 LYS GLN VAL LEU GLU ASP ASP ARG PHE SER LEU LYS ASP SEQRES 7 A 412 THR ALA ASN PRO GLY VAL PRO ARG GLN TYR ALA LEU THR SEQRES 8 A 412 ILE PRO PRO GLU VAL VAL ASN ASN MET GLY ASN ILE ASN SEQRES 9 A 412 SER ALA GLY LEU ARG ASN ALA VAL MET LYS THR LEU SER SEQRES 10 A 412 PRO GLN ALA ASP ARG GLU LEU GLY GLY TRP LEU GLU ALA SEQRES 11 A 412 GLN ALA HIS GLN LEU LEU ASP ARG LEU ILE GLU GLN GLY SEQRES 12 A 412 PRO PRO ALA ASP LEU ARG ASP GLY PHE THR GLU PRO TYR SEQRES 13 A 412 SER ALA ALA LEU HIS CYS ARG LEU LEU GLY ILE PRO THR SEQRES 14 A 412 ASP ASP TRP ARG ARG LEU MET SER GLY ILE ASP VAL ALA SEQRES 15 A 412 PHE ILE THR SER PRO ARG THR PHE GLU GLY SER ALA VAL SEQRES 16 A 412 ASN TRP TYR LYS ASP LEU GLY TYR MET VAL ASP ARG LEU SEQRES 17 A 412 ASN ALA ASP PRO GLU PRO THR GLU GLY LEU LEU GLY ARG SEQRES 18 A 412 PHE ALA GLU LEU ARG ARG SER PRO ASP VAL SER ASP GLN SEQRES 19 A 412 VAL SER ASP GLU LEU LEU ALA THR VAL ALA LEU SER LEU SEQRES 20 A 412 PHE GLY ALA GLY ALA VAL SER THR SER ALA PHE LEU GLN SEQRES 21 A 412 HIS ALA ILE ILE ALA LEU ALA GLN GLN PRO GLU LEU ALA SEQRES 22 A 412 ASP ARG LEU ARG ALA GLU PRO ALA VAL ILE GLY ARG ALA SEQRES 23 A 412 VAL ASP GLU LEU LEU ARG TYR ASN LEU SER ILE GLY ASP SEQRES 24 A 412 ALA LEU PRO ARG ILE ALA LEU ALA ASP VAL ARG LEU GLY SEQRES 25 A 412 GLU VAL GLU ILE ARG ALA GLY GLU LEU VAL LEU VAL LEU SEQRES 26 A 412 ILE GLU GLY ALA ASN TYR ASP PRO ALA VAL PHE PRO HIS SEQRES 27 A 412 PRO GLU ARG ILE ASP PHE ASP ARG GLU SER ASN PRO HIS SEQRES 28 A 412 LEU ALA PHE GLY GLY GLY GLN HIS PHE CYS PRO ALA SER SEQRES 29 A 412 ALA LEU GLY ARG THR HIS ALA GLU ILE ALA LEU THR ALA SEQRES 30 A 412 LEU VAL GLU LYS LEU PRO ALA LEU ARG LEU ALA LEU PRO SEQRES 31 A 412 VAL GLU GLN LEU ALA TRP ARG PRO GLY PHE ILE LYS ARG SEQRES 32 A 412 LEU PRO GLU ARG LEU PRO VAL LEU TRP SEQRES 1 B 412 MET THR THR THR ALA GLN ARG ASP PRO VAL LEU PRO GLY SEQRES 2 B 412 THR ALA HIS HIS PRO PRO LEU PRO ASP PHE PRO LEU SER SEQRES 3 B 412 ARG ARG GLY ASP ILE LEU PRO ALA GLU ALA GLU ARG LEU SEQRES 4 B 412 ARG ALA GLU GLN PRO VAL ALA ARG VAL ARG THR MET THR SEQRES 5 B 412 GLY ASP GLU ALA TRP LEU VAL SER SER TYR GLU LEU ALA SEQRES 6 B 412 LYS GLN VAL LEU GLU ASP ASP ARG PHE SER LEU LYS ASP SEQRES 7 B 412 THR ALA ASN PRO GLY VAL PRO ARG GLN TYR ALA LEU THR SEQRES 8 B 412 ILE PRO PRO GLU VAL VAL ASN ASN MET GLY ASN ILE ASN SEQRES 9 B 412 SER ALA GLY LEU ARG ASN ALA VAL MET LYS THR LEU SER SEQRES 10 B 412 PRO GLN ALA ASP ARG GLU LEU GLY GLY TRP LEU GLU ALA SEQRES 11 B 412 GLN ALA HIS GLN LEU LEU ASP ARG LEU ILE GLU GLN GLY SEQRES 12 B 412 PRO PRO ALA ASP LEU ARG ASP GLY PHE THR GLU PRO TYR SEQRES 13 B 412 SER ALA ALA LEU HIS CYS ARG LEU LEU GLY ILE PRO THR SEQRES 14 B 412 ASP ASP TRP ARG ARG LEU MET SER GLY ILE ASP VAL ALA SEQRES 15 B 412 PHE ILE THR SER PRO ARG THR PHE GLU GLY SER ALA VAL SEQRES 16 B 412 ASN TRP TYR LYS ASP LEU GLY TYR MET VAL ASP ARG LEU SEQRES 17 B 412 ASN ALA ASP PRO GLU PRO THR GLU GLY LEU LEU GLY ARG SEQRES 18 B 412 PHE ALA GLU LEU ARG ARG SER PRO ASP VAL SER ASP GLN SEQRES 19 B 412 VAL SER ASP GLU LEU LEU ALA THR VAL ALA LEU SER LEU SEQRES 20 B 412 PHE GLY ALA GLY ALA VAL SER THR SER ALA PHE LEU GLN SEQRES 21 B 412 HIS ALA ILE ILE ALA LEU ALA GLN GLN PRO GLU LEU ALA SEQRES 22 B 412 ASP ARG LEU ARG ALA GLU PRO ALA VAL ILE GLY ARG ALA SEQRES 23 B 412 VAL ASP GLU LEU LEU ARG TYR ASN LEU SER ILE GLY ASP SEQRES 24 B 412 ALA LEU PRO ARG ILE ALA LEU ALA ASP VAL ARG LEU GLY SEQRES 25 B 412 GLU VAL GLU ILE ARG ALA GLY GLU LEU VAL LEU VAL LEU SEQRES 26 B 412 ILE GLU GLY ALA ASN TYR ASP PRO ALA VAL PHE PRO HIS SEQRES 27 B 412 PRO GLU ARG ILE ASP PHE ASP ARG GLU SER ASN PRO HIS SEQRES 28 B 412 LEU ALA PHE GLY GLY GLY GLN HIS PHE CYS PRO ALA SER SEQRES 29 B 412 ALA LEU GLY ARG THR HIS ALA GLU ILE ALA LEU THR ALA SEQRES 30 B 412 LEU VAL GLU LYS LEU PRO ALA LEU ARG LEU ALA LEU PRO SEQRES 31 B 412 VAL GLU GLN LEU ALA TRP ARG PRO GLY PHE ILE LYS ARG SEQRES 32 B 412 LEU PRO GLU ARG LEU PRO VAL LEU TRP HET ADE A 501 10 HET HEM A 502 43 HET ADE B 501 10 HET HEM B 502 43 HET UYM B 503 28 HETNAM ADE ADENINE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM UYM (3S,6S)-3,6-BIS[(1H-INDOL-3-YL)METHYL]PIPERAZINE-2,5- HETNAM 2 UYM DIONE HETSYN HEM HEME FORMUL 3 ADE 2(C5 H5 N5) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 7 UYM C22 H20 N4 O2 FORMUL 8 HOH *201(H2 O) HELIX 1 AA1 PRO A 33 GLN A 43 1 11 HELIX 2 AA2 SER A 61 ASP A 71 1 11 HELIX 3 AA3 LEU A 76 ASN A 81 5 6 HELIX 4 AA4 PRO A 93 VAL A 97 5 5 HELIX 5 AA5 LEU A 108 LEU A 116 1 9 HELIX 6 AA6 SER A 117 ARG A 122 5 6 HELIX 7 AA7 GLU A 123 GLY A 143 1 21 HELIX 8 AA8 LEU A 148 PHE A 152 1 5 HELIX 9 AA9 PHE A 152 GLY A 166 1 15 HELIX 10 AB1 ASP A 171 PHE A 183 1 13 HELIX 11 AB2 GLY A 192 ASN A 209 1 18 HELIX 12 AB3 GLU A 216 LEU A 225 1 10 HELIX 13 AB4 SER A 236 GLN A 269 1 34 HELIX 14 AB5 GLN A 269 GLU A 279 1 11 HELIX 15 AB6 VAL A 282 ASN A 294 1 13 HELIX 16 AB7 LEU A 325 TYR A 331 1 7 HELIX 17 AB8 GLY A 356 PHE A 360 5 5 HELIX 18 AB9 ALA A 363 LEU A 382 1 20 HELIX 19 AC1 PRO A 390 LEU A 394 5 5 HELIX 20 AC2 PRO B 33 GLN B 43 1 11 HELIX 21 AC3 SER B 61 ASP B 71 1 11 HELIX 22 AC4 LEU B 76 ASN B 81 5 6 HELIX 23 AC5 PRO B 93 VAL B 97 5 5 HELIX 24 AC6 ASN B 98 ALA B 106 1 9 HELIX 25 AC7 LEU B 108 SER B 117 1 10 HELIX 26 AC8 GLU B 123 GLY B 143 1 21 HELIX 27 AC9 LEU B 148 PHE B 152 1 5 HELIX 28 AD1 PHE B 152 GLY B 166 1 15 HELIX 29 AD2 ASP B 171 PHE B 183 1 13 HELIX 30 AD3 GLY B 192 ASN B 209 1 18 HELIX 31 AD4 GLU B 216 ARG B 226 1 11 HELIX 32 AD5 SER B 236 GLN B 269 1 34 HELIX 33 AD6 GLN B 269 GLU B 279 1 11 HELIX 34 AD7 VAL B 282 ASN B 294 1 13 HELIX 35 AD8 LEU B 325 TYR B 331 1 7 HELIX 36 AD9 GLY B 356 PHE B 360 5 5 HELIX 37 AE1 ALA B 363 LEU B 382 1 20 HELIX 38 AE2 PRO B 390 LEU B 394 5 5 SHEET 1 AA1 5 VAL A 45 ARG A 49 0 SHEET 2 AA1 5 GLU A 55 VAL A 59 -1 O LEU A 58 N ALA A 46 SHEET 3 AA1 5 LEU A 321 VAL A 324 1 O LEU A 323 N TRP A 57 SHEET 4 AA1 5 LEU A 301 ALA A 305 -1 N ARG A 303 O VAL A 322 SHEET 5 AA1 5 PHE A 74 SER A 75 -1 N SER A 75 O ILE A 304 SHEET 1 AA2 3 ALA A 146 ASP A 147 0 SHEET 2 AA2 3 PRO A 409 LEU A 411 -1 O VAL A 410 N ALA A 146 SHEET 3 AA2 3 ARG A 386 LEU A 387 -1 N ARG A 386 O LEU A 411 SHEET 1 AA3 2 VAL A 309 LEU A 311 0 SHEET 2 AA3 2 VAL A 314 ILE A 316 -1 O ILE A 316 N VAL A 309 SHEET 1 AA4 5 VAL B 45 ARG B 49 0 SHEET 2 AA4 5 GLU B 55 VAL B 59 -1 O LEU B 58 N ALA B 46 SHEET 3 AA4 5 LEU B 321 VAL B 324 1 O LEU B 323 N TRP B 57 SHEET 4 AA4 5 LEU B 301 ALA B 305 -1 N ARG B 303 O VAL B 322 SHEET 5 AA4 5 PHE B 74 SER B 75 -1 N SER B 75 O ILE B 304 SHEET 1 AA5 3 ALA B 146 ASP B 147 0 SHEET 2 AA5 3 PRO B 409 LEU B 411 -1 O VAL B 410 N ALA B 146 SHEET 3 AA5 3 ARG B 386 LEU B 387 -1 N ARG B 386 O LEU B 411 SHEET 1 AA6 2 VAL B 309 LEU B 311 0 SHEET 2 AA6 2 VAL B 314 ILE B 316 -1 O ILE B 316 N VAL B 309 LINK SG CYS A 361 FE HEM A 502 1555 1555 2.37 LINK SG CYS B 361 FE HEM B 502 1555 1555 2.43 CISPEP 1 PHE A 23 PRO A 24 0 3.10 CISPEP 2 PRO A 144 PRO A 145 0 -5.04 CISPEP 3 PHE B 23 PRO B 24 0 6.57 CISPEP 4 PRO B 144 PRO B 145 0 -2.57 CRYST1 84.453 84.453 133.377 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007498 0.00000