data_8YZL # _entry.id 8YZL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YZL pdb_00008yzl 10.2210/pdb8yzl/pdb WWPDB D_1300045716 ? ? BMRB 36654 ? 10.13018/BMR36654 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-03-12 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8YZL _pdbx_database_status.recvd_initial_deposition_date 2024-04-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of a RNA duplex formed by C9orf72 GGGGCC repeats' _pdbx_database_related.db_id 36654 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email dahan@sjtu.edu.cn _pdbx_contact_author.name_first Da _pdbx_contact_author.name_last Han _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0804-2964 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, Y.' 1 0009-0002-6945-7706 'Zhang, Y.' 2 0009-0003-2029-9871 'Guo, P.' 3 0000-0001-7760-5786 'Han, D.' 4 0000-0002-0804-2964 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CC _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chin.J.Chem. _citation.journal_id_ASTM CJOCEV _citation.journal_id_CSD 1122 _citation.journal_id_ISSN 1001-604X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis for the GGGGCC repeat RNA binding to SRSF2 protein.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Yang, Y.' 2 0009-0002-6945-7706 primary 'Zhang, Y.' 3 0009-0003-2029-9871 primary 'Yi, J.' 4 ? primary 'Wan, L.' 5 ? primary 'Wang, Y.' 6 ? primary 'Gao, Q.' 7 ? primary 'Xu, D.' 8 ? primary 'Guo, P.' 9 0000-0001-7760-5786 primary 'Han, D.' 10 0000-0002-0804-2964 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*CP*CP*GP*GP*GP*GP*CP*CP*GP*G)-3') ; _entity.formula_weight 3247.004 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCGGGGCCGG _entity_poly.pdbx_seq_one_letter_code_can CCGGGGCCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 G n 1 5 G n 1 6 G n 1 7 C n 1 8 C n 1 9 G n 1 10 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n B 1 1 C 1 11 11 C C B . n B 1 2 C 2 12 12 C C B . n B 1 3 G 3 13 13 G G B . n B 1 4 G 4 14 14 G G B . n B 1 5 G 5 15 15 G G B . n B 1 6 G 6 16 16 G G B . n B 1 7 C 7 17 17 C C B . n B 1 8 C 8 18 18 C C B . n B 1 9 G 9 19 19 G G B . n B 1 10 G 10 20 20 G G B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YZL _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8YZL _struct.title 'Solution NMR structure of a RNA duplex formed by C9orf72 GGGGCC repeats' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YZL _struct_keywords.text 'C9ALS-FTD, GG mismatch, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8YZL _struct_ref.pdbx_db_accession 8YZL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8YZL A 1 ? 10 ? 8YZL 1 ? 10 ? 1 10 2 1 8YZL B 1 ? 10 ? 8YZL 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -5 ? 1 'SSA (A^2)' 3790 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 1 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 1 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 1 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 3 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 3 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 3 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 4 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 4 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 4 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 B G 6 O6 ? ? A G 5 B G 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 B G 6 N7 ? ? A G 5 B G 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 6 N7 ? ? ? 1_555 B G 5 N2 ? ? A G 6 B G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B G 5 N1 ? ? A G 6 B G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 7 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8YZL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "HO5'" A C 1 ? ? OP2 A C 2 ? ? 1.53 2 5 "HO5'" B C 11 ? ? OP2 B C 12 ? ? 1.54 3 6 "HO5'" A C 1 ? ? OP2 A C 2 ? ? 1.54 4 7 "HO5'" B C 11 ? ? OP2 B C 12 ? ? 1.56 5 7 "HO5'" A C 1 ? ? OP2 A C 2 ? ? 1.57 6 10 "HO5'" A C 1 ? ? OP2 A C 2 ? ? 1.56 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 112.97 108.50 4.47 0.70 N 2 1 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.78 108.50 6.28 0.70 N 3 1 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 113.06 108.50 4.56 0.70 N 4 1 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 117.34 108.50 8.84 0.70 N 5 1 "O4'" B G 20 ? ? "C1'" B G 20 ? ? N9 B G 20 ? ? 114.38 108.50 5.88 0.70 N 6 2 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.46 108.50 4.96 0.70 N 7 2 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.77 108.50 6.27 0.70 N 8 2 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 115.65 108.50 7.15 0.70 N 9 3 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.53 108.50 5.03 0.70 N 10 3 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 113.98 108.50 5.48 0.70 N 11 3 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 114.00 108.50 5.50 0.70 N 12 4 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.17 108.50 5.67 0.70 N 13 4 N3 A G 6 ? ? C4 A G 6 ? ? C5 A G 6 ? ? 125.59 128.60 -3.01 0.50 N 14 4 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 116.18 108.50 7.68 0.70 N 15 4 N3 B G 16 ? ? C4 B G 16 ? ? C5 B G 16 ? ? 125.25 128.60 -3.35 0.50 N 16 4 "O4'" B C 18 ? ? "C1'" B C 18 ? ? N1 B C 18 ? ? 113.12 108.50 4.62 0.70 N 17 5 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.14 108.50 5.64 0.70 N 18 5 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 113.43 108.50 4.93 0.70 N 19 5 "C3'" A G 9 ? ? "C2'" A G 9 ? ? "C1'" A G 9 ? ? 106.37 101.50 4.87 0.80 N 20 5 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 114.83 108.50 6.33 0.70 N 21 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.87 108.50 5.37 0.70 N 22 5 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 114.60 108.50 6.10 0.70 N 23 6 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.16 108.50 5.66 0.70 N 24 6 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 115.40 108.50 6.90 0.70 N 25 7 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.50 108.50 6.00 0.70 N 26 7 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 115.04 108.50 6.54 0.70 N 27 7 N3 B G 16 ? ? C4 B G 16 ? ? C5 B G 16 ? ? 125.50 128.60 -3.10 0.50 N 28 8 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.12 108.50 4.62 0.70 N 29 8 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.08 108.50 5.58 0.70 N 30 8 N3 A G 6 ? ? C4 A G 6 ? ? C5 A G 6 ? ? 125.58 128.60 -3.02 0.50 N 31 8 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 113.49 108.50 4.99 0.70 N 32 9 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.37 108.50 5.87 0.70 N 33 9 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 114.67 108.50 6.17 0.70 N 34 9 "O4'" B C 18 ? ? "C1'" B C 18 ? ? N1 B C 18 ? ? 112.86 108.50 4.36 0.70 N 35 9 "C5'" B G 19 ? ? "C4'" B G 19 ? ? "O4'" B G 19 ? ? 115.67 109.80 5.87 0.90 N 36 10 "O4'" A G 6 ? ? "C1'" A G 6 ? ? N9 A G 6 ? ? 114.40 108.50 5.90 0.70 N 37 10 "O4'" B G 16 ? ? "C1'" B G 16 ? ? N9 B G 16 ? ? 117.03 108.50 8.53 0.70 N 38 10 N3 B G 16 ? ? C4 B G 16 ? ? C5 B G 16 ? ? 125.57 128.60 -3.03 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 G B 16 ? ? 0.071 'SIDE CHAIN' 2 4 G A 10 ? ? 0.074 'SIDE CHAIN' 3 4 C B 12 ? ? 0.071 'SIDE CHAIN' 4 5 G A 4 ? ? 0.066 'SIDE CHAIN' 5 5 C B 11 ? ? 0.068 'SIDE CHAIN' 6 5 G B 14 ? ? 0.051 'SIDE CHAIN' 7 7 C B 11 ? ? 0.058 'SIDE CHAIN' 8 8 G A 4 ? ? 0.058 'SIDE CHAIN' 9 8 G B 14 ? ? 0.064 'SIDE CHAIN' 10 9 G A 3 ? ? 0.056 'SIDE CHAIN' 11 9 G A 4 ? ? 0.052 'SIDE CHAIN' 12 9 G B 14 ? ? 0.082 'SIDE CHAIN' 13 10 G A 4 ? ? 0.063 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 8YZL _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8YZL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.5 mM RNA (5'-R(*CP*CP*GP*GP*GP*GP*CP*CP*GP*G)-3'), 1 mM sodium phosphate, 0.02 mM DSS, 100 mM sodium chloride, 99.96% D2O ; '99.96% D2O' 1 solution ? 2 ;0.5 mM RNA (5'-R(*CP*CP*GP*GP*GP*GP*CP*CP*GP*G)-3'), 1 mM sodium phosphate, 0.02 mM DSS, 100 mM sodium chloride, 90% H2O/10% D2O ; '90% H2O/10% D2O' 2 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;RNA (5'-R(*CP*CP*GP*GP*GP*GP*CP*CP*GP*G)-3') ; 0.5 ? mM 'natural abundance' 1 'sodium phosphate' 1 ? mM 'natural abundance' 1 DSS 0.02 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' 2 ;RNA (5'-R(*CP*CP*GP*GP*GP*GP*CP*CP*GP*G)-3') ; 0.5 ? mM 'natural abundance' 2 'sodium phosphate' 1 ? mM 'natural abundance' 2 DSS 0.02 ? mM 'natural abundance' 2 'sodium chloride' 100 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 atm 1 7.0 101 ? ? mM 1 ? pH ? ? K 2 278 atm 1 7.0 101 ? ? mM 2 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 3 2 2 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 8YZL 'simulated annealing' ? 3 8YZL refinement ? 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? Biospin 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 'structure calculation' GROMACS 2021.7 'Alekseenko, Apol, Apostolov, Bauer, Berendsen, Bjelkmar, Blau, ... and Hess' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8YZL 'double helix' 8YZL 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 10 1_555 0.230 -0.129 -0.059 3.451 -9.477 -1.446 1 A_C1:G20_B A 1 ? B 20 ? 19 1 1 A C 2 1_555 B G 9 1_555 0.390 -0.158 0.014 1.087 -3.595 0.940 2 A_C2:G19_B A 2 ? B 19 ? 19 1 1 A G 3 1_555 B C 8 1_555 -0.113 -0.107 -0.180 -7.906 -6.223 -1.879 3 A_G3:C18_B A 3 ? B 18 ? 19 1 1 A G 4 1_555 B C 7 1_555 -0.503 -0.214 0.159 3.274 -13.813 0.396 4 A_G4:C17_B A 4 ? B 17 ? 19 1 1 A G 5 1_555 B G 6 1_555 1.389 3.505 0.418 -24.139 -0.769 -89.964 5 A_G5:G16_B A 5 ? B 16 ? 6 3 1 A G 6 1_555 B G 5 1_555 -1.758 -3.237 -0.363 20.344 8.759 88.530 6 A_G6:G15_B A 6 ? B 15 ? 6 3 1 A C 7 1_555 B G 4 1_555 0.294 -0.152 0.426 -9.984 -6.121 -2.482 7 A_C7:G14_B A 7 ? B 14 ? 19 1 1 A C 8 1_555 B G 3 1_555 0.266 -0.161 0.094 -0.251 -7.564 -0.456 8 A_C8:G13_B A 8 ? B 13 ? 19 1 1 A G 9 1_555 B C 2 1_555 -0.077 -0.132 -0.191 -7.739 -10.941 -0.878 9 A_G9:C12_B A 9 ? B 12 ? 19 1 1 A G 10 1_555 B C 1 1_555 -0.176 -0.127 -0.209 -7.333 -10.660 -1.318 10 A_G10:C11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 10 1_555 A C 2 1_555 B G 9 1_555 -0.490 -2.420 3.290 -1.898 4.458 28.245 -5.852 0.581 2.907 9.051 3.853 28.649 1 AA_C1C2:G19G20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A C 2 1_555 B G 9 1_555 A G 3 1_555 B C 8 1_555 -0.036 -2.475 3.441 1.398 7.168 23.014 -8.071 0.507 2.557 17.411 -3.397 24.130 2 AA_C2G3:C18G19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A G 3 1_555 B C 8 1_555 A G 4 1_555 B C 7 1_555 -0.605 -1.230 3.042 -5.183 3.617 30.091 -2.976 0.203 2.938 6.872 9.847 30.733 3 AA_G3G4:C17C18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A G 4 1_555 B C 7 1_555 A G 5 1_555 B G 6 1_555 0.338 -2.973 3.049 9.276 7.505 85.133 -2.337 -0.058 2.849 5.524 -6.827 85.807 4 AA_G4G5:G16C17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A G 5 1_555 B G 6 1_555 A G 6 1_555 B G 5 1_555 -0.161 4.191 -0.219 135.197 -108.877 -177.610 -2.097 -0.082 -0.161 54.439 67.599 -179.866 5 AA_G5G6:G15G16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A G 6 1_555 B G 5 1_555 A C 7 1_555 B G 4 1_555 -1.937 -2.510 -3.312 120.038 -118.857 44.413 -2.257 -0.034 -0.897 -61.848 -62.462 169.750 6 AA_G6C7:G14G15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A C 7 1_555 B G 4 1_555 A C 8 1_555 B G 3 1_555 0.370 -1.290 2.962 2.850 3.384 30.781 -2.984 -0.205 2.830 6.334 -5.335 31.090 7 AA_C7C8:G13G14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A C 8 1_555 B G 3 1_555 A G 9 1_555 B C 2 1_555 -0.025 -1.848 3.371 4.749 9.931 30.982 -4.882 0.815 2.636 17.898 -8.559 32.834 8 AA_C8G9:C12G13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A G 9 1_555 B C 2 1_555 A G 10 1_555 B C 1 1_555 0.437 -1.552 3.242 1.441 3.641 33.987 -3.195 -0.522 3.079 6.203 -2.455 34.206 9 AA_G9G10:C11C12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8YZL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #