HEADER DNA BINDING PROTEIN 08-APR-24 8YZS TITLE STRUCTURE OF THE NACC1 BEN DOMAIN IN COMPLEX WITH ITS TARGET DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEUS ACCUMBENS-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: BEN DOMAIN; COMPND 5 SYNONYM: NAC-1,BTB/POZ DOMAIN-CONTAINING PROTEIN 14B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CATG-CONTAINING DNA; COMPND 9 CHAIN: E, F, G, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NACC1, BTBD14B, NAC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS NACC1, BEN DOMAIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.REN,Z.WANG REVDAT 2 30-OCT-24 8YZS 1 JRNL REVDAT 1 25-SEP-24 8YZS 0 JRNL AUTH J.REN,J.WANG,Y.REN,Y.ZHANG,P.WEI,M.WANG,Y.ZHANG,M.LI,C.YUAN, JRNL AUTH 2 H.GONG,J.JIANG,Z.WANG JRNL TITL STRUCTURAL BASIS OF DNA RECOGNITION BY BEN DOMAIN PROTEINS JRNL TITL 2 REVEALS A ROLE FOR OLIGOMERIZATION IN UNMETHYLATED DNA JRNL TITL 3 SELECTION BY BANP. JRNL REF NUCLEIC ACIDS RES. V. 52 11349 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39225042 JRNL DOI 10.1093/NAR/GKAE762 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8300 - 5.5500 1.00 2810 162 0.1747 0.1964 REMARK 3 2 5.5500 - 4.4100 1.00 2673 154 0.1689 0.2080 REMARK 3 3 4.4100 - 3.8500 1.00 2658 155 0.1758 0.2009 REMARK 3 4 3.8500 - 3.5000 1.00 2645 143 0.1969 0.2422 REMARK 3 5 3.5000 - 3.2500 0.99 2633 123 0.2162 0.2484 REMARK 3 6 3.2500 - 3.0600 1.00 2648 136 0.2366 0.2464 REMARK 3 7 3.0600 - 2.9100 1.00 2631 123 0.2468 0.3223 REMARK 3 8 2.9100 - 2.7800 1.00 2625 121 0.2553 0.3513 REMARK 3 9 2.7800 - 2.6700 1.00 2629 136 0.2401 0.2788 REMARK 3 10 2.6700 - 2.5800 1.00 2623 120 0.2458 0.3010 REMARK 3 11 2.5800 - 2.5000 1.00 2622 134 0.2449 0.3265 REMARK 3 12 2.5000 - 2.4300 1.00 2594 140 0.2513 0.3241 REMARK 3 13 2.4300 - 2.3600 1.00 2594 169 0.2632 0.3211 REMARK 3 14 2.3600 - 2.3100 0.94 2418 122 0.2799 0.3693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.991 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4892 REMARK 3 ANGLE : 1.093 6782 REMARK 3 CHIRALITY : 0.060 756 REMARK 3 PLANARITY : 0.007 732 REMARK 3 DIHEDRAL : 23.908 1907 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE AT PH OF 7.0 AND 12% REMARK 280 (W/V) POLYETHYLENE GLYCOL 20,000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.56300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.92250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.92250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.56300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 339 REMARK 465 SER A 340 REMARK 465 ALA A 341 REMARK 465 SER A 342 REMARK 465 LEU A 343 REMARK 465 PRO A 344 REMARK 465 GLY B 339 REMARK 465 SER B 340 REMARK 465 ALA B 341 REMARK 465 SER B 342 REMARK 465 LEU B 343 REMARK 465 PRO B 344 REMARK 465 ALA B 345 REMARK 465 GLU B 346 REMARK 465 LEU B 347 REMARK 465 ILE B 348 REMARK 465 GLY C 339 REMARK 465 SER C 340 REMARK 465 ALA C 341 REMARK 465 SER C 342 REMARK 465 LEU C 343 REMARK 465 PRO C 344 REMARK 465 ALA C 345 REMARK 465 GLU C 346 REMARK 465 LEU C 347 REMARK 465 CYS C 416 REMARK 465 GLY C 417 REMARK 465 THR C 418 REMARK 465 GLY C 419 REMARK 465 ILE C 420 REMARK 465 ARG C 421 REMARK 465 SER C 422 REMARK 465 SER C 423 REMARK 465 THR C 424 REMARK 465 ASN C 425 REMARK 465 ASP C 426 REMARK 465 PRO C 427 REMARK 465 ARG C 428 REMARK 465 ARG C 429 REMARK 465 TRP C 475 REMARK 465 MSE C 476 REMARK 465 PRO C 477 REMARK 465 GLY D 339 REMARK 465 SER D 340 REMARK 465 ALA D 341 REMARK 465 SER D 342 REMARK 465 LEU D 343 REMARK 465 PRO D 344 REMARK 465 ALA D 345 REMARK 465 GLU D 346 REMARK 465 LEU D 347 REMARK 465 CYS D 416 REMARK 465 GLY D 417 REMARK 465 THR D 418 REMARK 465 GLY D 419 REMARK 465 ILE D 420 REMARK 465 ARG D 421 REMARK 465 SER D 422 REMARK 465 SER D 423 REMARK 465 THR D 424 REMARK 465 ASN D 425 REMARK 465 ASP D 426 REMARK 465 PRO D 427 REMARK 465 ARG D 428 REMARK 465 ARG D 429 REMARK 465 LYS D 430 REMARK 465 VAL D 471 REMARK 465 ARG D 472 REMARK 465 LYS D 473 REMARK 465 SER D 474 REMARK 465 TRP D 475 REMARK 465 MSE D 476 REMARK 465 PRO D 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ARG A 354 O HOH A 501 2.12 REMARK 500 OP2 DA E 10 O HOH E 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 9 O3' DT G 9 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG G 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 354 45.44 -99.42 REMARK 500 ASP A 361 108.44 -50.53 REMARK 500 CYS A 416 42.87 -97.22 REMARK 500 GLN B 350 78.26 -111.98 REMARK 500 ARG B 354 45.28 -85.15 REMARK 500 GLU B 362 34.31 -82.95 REMARK 500 CYS B 416 45.38 -104.34 REMARK 500 LYS C 473 66.00 -67.51 REMARK 500 ASN D 349 56.97 -100.93 REMARK 500 ARG D 394 95.77 -67.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YZS A 341 477 UNP Q96RE7 NACC1_HUMAN 341 477 DBREF 8YZS B 341 477 UNP Q96RE7 NACC1_HUMAN 341 477 DBREF 8YZS C 341 477 UNP Q96RE7 NACC1_HUMAN 341 477 DBREF 8YZS D 341 477 UNP Q96RE7 NACC1_HUMAN 341 477 DBREF 8YZS E 1 11 PDB 8YZS 8YZS 1 11 DBREF 8YZS F 1 11 PDB 8YZS 8YZS 1 11 DBREF 8YZS G 1 11 PDB 8YZS 8YZS 1 11 DBREF 8YZS H 1 11 PDB 8YZS 8YZS 1 11 SEQADV 8YZS GLY A 339 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS SER A 340 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS GLY B 339 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS SER B 340 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS GLY C 339 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS SER C 340 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS GLY D 339 UNP Q96RE7 EXPRESSION TAG SEQADV 8YZS SER D 340 UNP Q96RE7 EXPRESSION TAG SEQRES 1 A 139 GLY SER ALA SER LEU PRO ALA GLU LEU ILE ASN GLN ILE SEQRES 2 A 139 GLY ASN ARG CYS HIS PRO LYS LEU TYR ASP GLU GLY ASP SEQRES 3 A 139 PRO SER GLU LYS LEU GLU LEU VAL THR GLY THR ASN VAL SEQRES 4 A 139 TYR ILE THR ARG ALA GLN LEU MSE ASN CYS HIS VAL SER SEQRES 5 A 139 ALA GLY THR ARG HIS LYS VAL LEU LEU ARG ARG LEU LEU SEQRES 6 A 139 ALA SER PHE PHE ASP ARG ASN THR LEU ALA ASN SER CYS SEQRES 7 A 139 GLY THR GLY ILE ARG SER SER THR ASN ASP PRO ARG ARG SEQRES 8 A 139 LYS PRO LEU ASP SER ARG VAL LEU HIS ALA VAL LYS TYR SEQRES 9 A 139 TYR CYS GLN ASN PHE ALA PRO ASN PHE LYS GLU SER GLU SEQRES 10 A 139 MSE ASN ALA ILE ALA ALA ASP MSE CYS THR ASN ALA ARG SEQRES 11 A 139 ARG VAL VAL ARG LYS SER TRP MSE PRO SEQRES 1 B 139 GLY SER ALA SER LEU PRO ALA GLU LEU ILE ASN GLN ILE SEQRES 2 B 139 GLY ASN ARG CYS HIS PRO LYS LEU TYR ASP GLU GLY ASP SEQRES 3 B 139 PRO SER GLU LYS LEU GLU LEU VAL THR GLY THR ASN VAL SEQRES 4 B 139 TYR ILE THR ARG ALA GLN LEU MSE ASN CYS HIS VAL SER SEQRES 5 B 139 ALA GLY THR ARG HIS LYS VAL LEU LEU ARG ARG LEU LEU SEQRES 6 B 139 ALA SER PHE PHE ASP ARG ASN THR LEU ALA ASN SER CYS SEQRES 7 B 139 GLY THR GLY ILE ARG SER SER THR ASN ASP PRO ARG ARG SEQRES 8 B 139 LYS PRO LEU ASP SER ARG VAL LEU HIS ALA VAL LYS TYR SEQRES 9 B 139 TYR CYS GLN ASN PHE ALA PRO ASN PHE LYS GLU SER GLU SEQRES 10 B 139 MSE ASN ALA ILE ALA ALA ASP MSE CYS THR ASN ALA ARG SEQRES 11 B 139 ARG VAL VAL ARG LYS SER TRP MSE PRO SEQRES 1 C 139 GLY SER ALA SER LEU PRO ALA GLU LEU ILE ASN GLN ILE SEQRES 2 C 139 GLY ASN ARG CYS HIS PRO LYS LEU TYR ASP GLU GLY ASP SEQRES 3 C 139 PRO SER GLU LYS LEU GLU LEU VAL THR GLY THR ASN VAL SEQRES 4 C 139 TYR ILE THR ARG ALA GLN LEU MSE ASN CYS HIS VAL SER SEQRES 5 C 139 ALA GLY THR ARG HIS LYS VAL LEU LEU ARG ARG LEU LEU SEQRES 6 C 139 ALA SER PHE PHE ASP ARG ASN THR LEU ALA ASN SER CYS SEQRES 7 C 139 GLY THR GLY ILE ARG SER SER THR ASN ASP PRO ARG ARG SEQRES 8 C 139 LYS PRO LEU ASP SER ARG VAL LEU HIS ALA VAL LYS TYR SEQRES 9 C 139 TYR CYS GLN ASN PHE ALA PRO ASN PHE LYS GLU SER GLU SEQRES 10 C 139 MSE ASN ALA ILE ALA ALA ASP MSE CYS THR ASN ALA ARG SEQRES 11 C 139 ARG VAL VAL ARG LYS SER TRP MSE PRO SEQRES 1 D 139 GLY SER ALA SER LEU PRO ALA GLU LEU ILE ASN GLN ILE SEQRES 2 D 139 GLY ASN ARG CYS HIS PRO LYS LEU TYR ASP GLU GLY ASP SEQRES 3 D 139 PRO SER GLU LYS LEU GLU LEU VAL THR GLY THR ASN VAL SEQRES 4 D 139 TYR ILE THR ARG ALA GLN LEU MSE ASN CYS HIS VAL SER SEQRES 5 D 139 ALA GLY THR ARG HIS LYS VAL LEU LEU ARG ARG LEU LEU SEQRES 6 D 139 ALA SER PHE PHE ASP ARG ASN THR LEU ALA ASN SER CYS SEQRES 7 D 139 GLY THR GLY ILE ARG SER SER THR ASN ASP PRO ARG ARG SEQRES 8 D 139 LYS PRO LEU ASP SER ARG VAL LEU HIS ALA VAL LYS TYR SEQRES 9 D 139 TYR CYS GLN ASN PHE ALA PRO ASN PHE LYS GLU SER GLU SEQRES 10 D 139 MSE ASN ALA ILE ALA ALA ASP MSE CYS THR ASN ALA ARG SEQRES 11 D 139 ARG VAL VAL ARG LYS SER TRP MSE PRO SEQRES 1 E 11 DT DT DT DA DC DA DT DG DT DA DA SEQRES 1 F 11 DT DT DT DA DC DA DT DG DT DA DA SEQRES 1 G 11 DT DT DT DA DC DA DT DG DT DA DA SEQRES 1 H 11 DT DT DT DA DC DA DT DG DT DA DA MODRES 8YZS MSE A 385 MET MODIFIED RESIDUE MODRES 8YZS MSE A 456 MET MODIFIED RESIDUE MODRES 8YZS MSE A 463 MET MODIFIED RESIDUE MODRES 8YZS MSE A 476 MET MODIFIED RESIDUE MODRES 8YZS MSE B 385 MET MODIFIED RESIDUE MODRES 8YZS MSE B 456 MET MODIFIED RESIDUE MODRES 8YZS MSE B 463 MET MODIFIED RESIDUE MODRES 8YZS MSE B 476 MET MODIFIED RESIDUE MODRES 8YZS MSE C 385 MET MODIFIED RESIDUE MODRES 8YZS MSE C 456 MET MODIFIED RESIDUE MODRES 8YZS MSE C 463 MET MODIFIED RESIDUE MODRES 8YZS MSE D 385 MET MODIFIED RESIDUE MODRES 8YZS MSE D 456 MET MODIFIED RESIDUE MODRES 8YZS MSE D 463 MET MODIFIED RESIDUE HET MSE A 385 8 HET MSE A 456 8 HET MSE A 463 8 HET MSE A 476 8 HET MSE B 385 8 HET MSE B 456 8 HET MSE B 463 8 HET MSE B 476 8 HET MSE C 385 8 HET MSE C 456 8 HET MSE C 463 8 HET MSE D 385 8 HET MSE D 456 8 HET MSE D 463 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 9 HOH *132(H2 O) HELIX 1 AA1 HIS A 356 TYR A 360 5 5 HELIX 2 AA2 ARG A 381 GLY A 392 1 12 HELIX 3 AA3 ARG A 394 PHE A 407 1 14 HELIX 4 AA4 ASP A 408 ASN A 414 1 7 HELIX 5 AA5 ASP A 433 ALA A 448 1 16 HELIX 6 AA6 LYS A 452 VAL A 471 1 20 HELIX 7 AA7 HIS B 356 TYR B 360 5 5 HELIX 8 AA8 ARG B 381 GLY B 392 1 12 HELIX 9 AA9 ARG B 394 PHE B 407 1 14 HELIX 10 AB1 ASP B 408 ASN B 414 1 7 HELIX 11 AB2 ASP B 433 ALA B 448 1 16 HELIX 12 AB3 LYS B 452 VAL B 471 1 20 HELIX 13 AB4 ARG C 381 GLY C 392 1 12 HELIX 14 AB5 ARG C 394 PHE C 407 1 14 HELIX 15 AB6 ASP C 408 SER C 415 1 8 HELIX 16 AB7 ASP C 433 ALA C 448 1 16 HELIX 17 AB8 LYS C 452 LYS C 473 1 22 HELIX 18 AB9 ARG D 381 GLY D 392 1 12 HELIX 19 AC1 ARG D 394 PHE D 407 1 14 HELIX 20 AC2 ASP D 408 ASN D 414 1 7 HELIX 21 AC3 ASP D 433 ALA D 448 1 16 HELIX 22 AC4 LYS D 452 VAL D 470 1 19 SHEET 1 AA1 2 LYS A 368 GLU A 370 0 SHEET 2 AA1 2 TYR A 378 THR A 380 -1 O ILE A 379 N LEU A 369 SHEET 1 AA2 2 LYS B 368 GLU B 370 0 SHEET 2 AA2 2 TYR B 378 THR B 380 -1 O ILE B 379 N LEU B 369 SHEET 1 AA3 2 LYS C 368 GLU C 370 0 SHEET 2 AA3 2 TYR C 378 THR C 380 -1 O ILE C 379 N LEU C 369 SHEET 1 AA4 2 LYS D 368 GLU D 370 0 SHEET 2 AA4 2 TYR D 378 THR D 380 -1 O ILE D 379 N LEU D 369 LINK C LEU A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N ASN A 386 1555 1555 1.33 LINK C GLU A 455 N MSE A 456 1555 1555 1.32 LINK C MSE A 456 N ASN A 457 1555 1555 1.33 LINK C ASP A 462 N MSE A 463 1555 1555 1.33 LINK C MSE A 463 N CYS A 464 1555 1555 1.33 LINK C TRP A 475 N MSE A 476 1555 1555 1.33 LINK C MSE A 476 N PRO A 477 1555 1555 1.35 LINK C LEU B 384 N MSE B 385 1555 1555 1.33 LINK C MSE B 385 N ASN B 386 1555 1555 1.33 LINK C GLU B 455 N MSE B 456 1555 1555 1.33 LINK C MSE B 456 N ASN B 457 1555 1555 1.33 LINK C ASP B 462 N MSE B 463 1555 1555 1.32 LINK C MSE B 463 N CYS B 464 1555 1555 1.33 LINK C TRP B 475 N MSE B 476 1555 1555 1.34 LINK C MSE B 476 N PRO B 477 1555 1555 1.35 LINK C LEU C 384 N MSE C 385 1555 1555 1.33 LINK C MSE C 385 N ASN C 386 1555 1555 1.33 LINK C GLU C 455 N MSE C 456 1555 1555 1.33 LINK C MSE C 456 N ASN C 457 1555 1555 1.34 LINK C ASP C 462 N MSE C 463 1555 1555 1.33 LINK C MSE C 463 N CYS C 464 1555 1555 1.34 LINK C LEU D 384 N MSE D 385 1555 1555 1.32 LINK C MSE D 385 N ASN D 386 1555 1555 1.34 LINK C GLU D 455 N MSE D 456 1555 1555 1.33 LINK C MSE D 456 N ASN D 457 1555 1555 1.33 LINK C ASP D 462 N MSE D 463 1555 1555 1.33 LINK C MSE D 463 N CYS D 464 1555 1555 1.34 CRYST1 77.126 83.883 133.845 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012966 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007471 0.00000 CONECT 310 316 CONECT 316 310 317 CONECT 317 316 318 320 CONECT 318 317 319 324 CONECT 319 318 CONECT 320 317 321 CONECT 321 320 322 CONECT 322 321 323 CONECT 323 322 CONECT 324 318 CONECT 876 883 CONECT 883 876 884 CONECT 884 883 885 887 CONECT 885 884 886 891 CONECT 886 885 CONECT 887 884 888 CONECT 888 887 889 CONECT 889 888 890 CONECT 890 889 CONECT 891 885 CONECT 924 930 CONECT 930 924 931 CONECT 931 930 932 934 CONECT 932 931 933 938 CONECT 933 932 CONECT 934 931 935 CONECT 935 934 936 CONECT 936 935 937 CONECT 937 936 CONECT 938 932 CONECT 1028 1040 CONECT 1040 1028 1041 CONECT 1041 1040 1042 1044 CONECT 1042 1041 1043 1048 CONECT 1043 1042 CONECT 1044 1041 1045 CONECT 1045 1044 1046 CONECT 1046 1045 1047 CONECT 1047 1046 CONECT 1048 1042 CONECT 1335 1341 CONECT 1341 1335 1342 CONECT 1342 1341 1343 1345 CONECT 1343 1342 1344 1349 CONECT 1344 1343 CONECT 1345 1342 1346 CONECT 1346 1345 1347 CONECT 1347 1346 1348 CONECT 1348 1347 CONECT 1349 1343 CONECT 1901 1908 CONECT 1908 1901 1909 CONECT 1909 1908 1910 1912 CONECT 1910 1909 1911 1916 CONECT 1911 1910 CONECT 1912 1909 1913 CONECT 1913 1912 1914 CONECT 1914 1913 1915 CONECT 1915 1914 CONECT 1916 1910 CONECT 1949 1955 CONECT 1955 1949 1956 CONECT 1956 1955 1957 1959 CONECT 1957 1956 1958 1963 CONECT 1958 1957 CONECT 1959 1956 1960 CONECT 1960 1959 1961 CONECT 1961 1960 1962 CONECT 1962 1961 CONECT 1963 1957 CONECT 2053 2065 CONECT 2065 2053 2066 CONECT 2066 2065 2067 2069 CONECT 2067 2066 2068 2073 CONECT 2068 2067 CONECT 2069 2066 2070 CONECT 2070 2069 2071 CONECT 2071 2070 2072 CONECT 2072 2071 CONECT 2073 2067 CONECT 2368 2374 CONECT 2374 2368 2375 CONECT 2375 2374 2376 2378 CONECT 2376 2375 2377 2382 CONECT 2377 2376 CONECT 2378 2375 2379 CONECT 2379 2378 2380 CONECT 2380 2379 2381 CONECT 2381 2380 CONECT 2382 2376 CONECT 2830 2837 CONECT 2837 2830 2838 CONECT 2838 2837 2839 2841 CONECT 2839 2838 2840 2845 CONECT 2840 2839 CONECT 2841 2838 2842 CONECT 2842 2841 2843 CONECT 2843 2842 2844 CONECT 2844 2843 CONECT 2845 2839 CONECT 2878 2884 CONECT 2884 2878 2885 CONECT 2885 2884 2886 2888 CONECT 2886 2885 2887 2892 CONECT 2887 2886 CONECT 2888 2885 2889 CONECT 2889 2888 2890 CONECT 2890 2889 2891 CONECT 2891 2890 CONECT 2892 2886 CONECT 3268 3274 CONECT 3274 3268 3275 CONECT 3275 3274 3276 3278 CONECT 3276 3275 3277 3282 CONECT 3277 3276 CONECT 3278 3275 3279 CONECT 3279 3278 3280 CONECT 3280 3279 3281 CONECT 3281 3280 CONECT 3282 3276 CONECT 3721 3728 CONECT 3728 3721 3729 CONECT 3729 3728 3730 3732 CONECT 3730 3729 3731 3736 CONECT 3731 3730 CONECT 3732 3729 3733 CONECT 3733 3732 3734 CONECT 3734 3733 3735 CONECT 3735 3734 CONECT 3736 3730 CONECT 3769 3775 CONECT 3775 3769 3776 CONECT 3776 3775 3777 3779 CONECT 3777 3776 3778 3783 CONECT 3778 3777 CONECT 3779 3776 3780 CONECT 3780 3779 3781 CONECT 3781 3780 3782 CONECT 3782 3781 CONECT 3783 3777 MASTER 396 0 14 22 8 0 0 6 4854 8 140 48 END