HEADER OXIDOREDUCTASE 12-APR-24 8Z2A TITLE CRYSTAL STRUCTURE OF ASPERGILLUS TERREUS GLUTAMATE DEHYDROGENASE TITLE 2 (ATGDH) WITH SEQUENTIAL MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS TERREUS; SOURCE 3 ORGANISM_TAXID: 33178; SOURCE 4 GENE: GDHA, ATEIFO6365_0005079300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUTAMATE DEHYDROGENASE, ALLOSTERY, COOPERATIVITY, ASPERGILLUS, CRYO- KEYWDS 2 EM, DOMAIN DYNAMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.K.J.GODSORA,P.BHAUMIK REVDAT 1 05-MAR-25 8Z2A 0 JRNL AUTH B.K.J.GODSORA,P.DAS,P.K.MISHRA,A.SAIRAMAN,S.KALEDHONKAR, JRNL AUTH 2 N.S.PUNEKAR,P.BHAUMIK JRNL TITL CONFORMATIONAL FLEXIBILITY ASSOCIATED WITH REMOTE RESIDUES JRNL TITL 2 REGULATES THE KINETIC PROPERTIES OF GLUTAMATE DEHYDROGENASE. JRNL REF PROTEIN SCI. V. 34 70038 2025 JRNL REFN ESSN 1469-896X JRNL PMID 39981924 JRNL DOI 10.1002/PRO.70038 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9100 - 5.6000 1.00 2963 156 0.1645 0.2265 REMARK 3 2 5.6000 - 4.4600 1.00 2879 152 0.1908 0.2728 REMARK 3 3 4.4600 - 3.9000 1.00 2847 150 0.1930 0.2583 REMARK 3 4 3.9000 - 3.5500 1.00 2849 150 0.2262 0.3073 REMARK 3 5 3.5500 - 3.2900 1.00 2821 148 0.2451 0.2955 REMARK 3 6 3.2900 - 3.1000 1.00 2838 150 0.2682 0.3517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.414 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5708 REMARK 3 OPERATOR: H, K, L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 7067 REMARK 3 ANGLE : 1.363 9571 REMARK 3 CHIRALITY : 0.082 1035 REMARK 3 PLANARITY : 0.014 1268 REMARK 3 DIHEDRAL : 7.679 989 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Z2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18106 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7ECR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM THIOCYANATE, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 71.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 71.79500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 71.79500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 71.79500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 71.79500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 71.79500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 71.79500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 71.79500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 71.79500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 71.79500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 71.79500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 71.79500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 71.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 71.79500 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 71.79500 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -71.79500 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 71.79500 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 254 CD GLN A 282 1.73 REMARK 500 NE2 GLN A 254 OE1 GLN A 282 1.84 REMARK 500 NE2 GLN A 254 NE2 GLN A 282 1.86 REMARK 500 NZ LYS B 29 OE2 GLU B 423 2.18 REMARK 500 OE2 GLU A 22 NH1 ARG A 34 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 177 CG GLU A 177 CD -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 455 C - N - CA ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 47.34 -81.93 REMARK 500 ASP A 154 -159.58 -169.56 REMARK 500 TRP A 187 61.72 -117.77 REMARK 500 ILE A 192 -6.87 64.10 REMARK 500 ALA A 220 108.23 -52.34 REMARK 500 ASP A 252 -164.45 -129.75 REMARK 500 ILE A 283 13.90 -64.74 REMARK 500 GLU A 285 5.49 -69.71 REMARK 500 PHE A 292 -104.93 58.77 REMARK 500 ALA A 293 -126.85 56.34 REMARK 500 PRO A 316 107.62 -56.95 REMARK 500 ALA A 378 1.53 -47.29 REMARK 500 ALA A 425 41.71 -149.33 REMARK 500 PRO B 8 -74.72 -47.91 REMARK 500 GLU B 22 -37.74 64.16 REMARK 500 ASN B 23 33.84 -79.96 REMARK 500 THR B 148 -57.10 -123.19 REMARK 500 ALA B 152 -178.15 -170.43 REMARK 500 ASP B 154 -151.99 -164.21 REMARK 500 ILE B 155 -73.59 -52.37 REMARK 500 SER B 175 -80.30 -132.52 REMARK 500 TRP B 176 98.00 79.09 REMARK 500 TRP B 187 54.73 -119.68 REMARK 500 ALA B 196 -87.57 23.34 REMARK 500 GLU B 217 49.18 -71.14 REMARK 500 SER B 218 -162.72 -69.56 REMARK 500 ALA B 220 113.34 -36.48 REMARK 500 SER B 229 10.05 57.38 REMARK 500 SER B 253 93.47 -69.41 REMARK 500 GLN B 254 99.22 76.82 REMARK 500 SER B 256 106.91 -171.34 REMARK 500 ILE B 283 -81.06 -24.40 REMARK 500 ALA B 284 38.52 35.89 REMARK 500 LYS B 295 -5.86 51.68 REMARK 500 GLN B 302 -114.65 -120.32 REMARK 500 ARG B 303 146.80 -176.46 REMARK 500 PRO B 304 -146.11 -80.54 REMARK 500 TRP B 305 -81.32 72.54 REMARK 500 VAL B 311 -152.01 168.16 REMARK 500 SER B 317 36.79 -144.70 REMARK 500 ALA B 318 -72.95 -102.24 REMARK 500 SER B 324 -155.70 -124.54 REMARK 500 ALA B 333 -49.99 -178.27 REMARK 500 ALA B 365 -10.63 78.57 REMARK 500 LYS B 374 65.54 -52.55 REMARK 500 ALA B 375 -50.45 150.83 REMARK 500 ALA B 378 3.81 -62.29 REMARK 500 VAL B 381 -32.07 -39.82 REMARK 500 ALA B 421 -51.01 69.37 REMARK 500 THR B 426 97.60 31.38 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 377 ALA A 378 -149.60 REMARK 500 SER B 253 GLN B 254 -145.39 REMARK 500 VAL B 311 ASP B 312 -113.00 REMARK 500 ALA B 333 ALA B 334 144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 64 0.11 SIDE CHAIN REMARK 500 ARG B 170 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8Z2A A 1 458 UNP T2D1F5 T2D1F5_ASPTE 1 460 DBREF 8Z2A B 1 458 UNP T2D1F5 T2D1F5_ASPTE 1 460 SEQADV 8Z2A SER A 246 UNP T2D1F5 ARG 246 ENGINEERED MUTATION SEQADV 8Z2A ASN A 260 UNP T2D1F5 LYS 260 ENGINEERED MUTATION SEQADV 8Z2A GLY A 261 UNP T2D1F5 ASP 261 ENGINEERED MUTATION SEQADV 8Z2A A UNP T2D1F5 THR 262 DELETION SEQADV 8Z2A A UNP T2D1F5 ALA 263 DELETION SEQADV 8Z2A GLU A 262 UNP T2D1F5 LYS 264 ENGINEERED MUTATION SEQADV 8Z2A GLY A 263 UNP T2D1F5 ASP 265 ENGINEERED MUTATION SEQADV 8Z2A SER B 246 UNP T2D1F5 ARG 246 ENGINEERED MUTATION SEQADV 8Z2A ASN B 260 UNP T2D1F5 LYS 260 ENGINEERED MUTATION SEQADV 8Z2A GLY B 261 UNP T2D1F5 ASP 261 ENGINEERED MUTATION SEQADV 8Z2A B UNP T2D1F5 THR 262 DELETION SEQADV 8Z2A B UNP T2D1F5 ALA 263 DELETION SEQADV 8Z2A GLU B 262 UNP T2D1F5 LYS 264 ENGINEERED MUTATION SEQADV 8Z2A GLY B 263 UNP T2D1F5 ASP 265 ENGINEERED MUTATION SEQRES 1 A 458 MET SER ASN LEU PRO VAL GLU PRO GLU PHE GLU GLN ALA SEQRES 2 A 458 TYR LYS GLU LEU ALA SER THR LEU GLU ASN SER THR LEU SEQRES 3 A 458 PHE GLN LYS ASN PRO GLU TYR ARG LYS ALA LEU ALA VAL SEQRES 4 A 458 VAL SER VAL PRO GLU ARG VAL ILE GLN PHE ARG VAL VAL SEQRES 5 A 458 TRP GLU ASN ASP LYS GLY GLU VAL GLN VAL ASN ARG GLY SEQRES 6 A 458 PHE ARG VAL GLN PHE ASN SER ALA LEU GLY PRO TYR LYS SEQRES 7 A 458 GLY GLY LEU ARG PHE HIS PRO SER VAL ASN LEU SER ILE SEQRES 8 A 458 LEU LYS PHE LEU GLY PHE GLU GLN ILE PHE LYS ASN ALA SEQRES 9 A 458 LEU THR GLY LEU ASN MET GLY GLY GLY LYS GLY GLY SER SEQRES 10 A 458 ASP PHE ASP PRO LYS GLY LYS SER ASP SER GLU ILE ARG SEQRES 11 A 458 ARG PHE CYS VAL ALA PHE MET THR GLU LEU CYS ARG HIS SEQRES 12 A 458 ILE GLY ALA ASP THR ASP VAL PRO ALA GLY ASP ILE GLY SEQRES 13 A 458 VAL THR GLY ARG GLU ILE GLY TYR LEU PHE GLY GLN TYR SEQRES 14 A 458 ARG LYS LEU ARG ASN SER TRP GLU GLY VAL LEU THR GLY SEQRES 15 A 458 LYS GLY GLY SER TRP GLY GLY SER LEU ILE ARG PRO GLU SEQRES 16 A 458 ALA THR GLY TYR GLY VAL VAL TYR TYR VAL GLU HIS MET SEQRES 17 A 458 ILE ALA HIS ALA THR ASN GLY ALA GLU SER PHE ALA GLY SEQRES 18 A 458 LYS ARG VAL ALA ILE SER GLY SER GLY ASN VAL ALA GLN SEQRES 19 A 458 TYR ALA ALA LEU LYS VAL ILE GLU LEU GLY GLY SER VAL SEQRES 20 A 458 VAL SER LEU SER ASP SER GLN GLY SER LEU ILE VAL ASN SEQRES 21 A 458 GLY GLU GLY SER PHE THR PRO ALA GLU ILE ASP ALA ILE SEQRES 22 A 458 ALA ALA LEU LYS VAL ASP ARG LYS GLN ILE ALA GLU LEU SEQRES 23 A 458 VAL THR ASP ALA ALA PHE ALA ASP LYS PHE THR TYR LEU SEQRES 24 A 458 PRO GLY GLN ARG PRO TRP VAL HIS VAL GLY ALA VAL ASP SEQRES 25 A 458 VAL ALA LEU PRO SER ALA THR GLN ASN GLU VAL SER GLY SEQRES 26 A 458 GLU GLU ALA GLN ALA LEU ILE ALA ALA GLY CYS LYS PHE SEQRES 27 A 458 ILE ALA GLU GLY SER ASN MET GLY CYS THR GLN ALA ALA SEQRES 28 A 458 ILE ASP ALA PHE GLU ALA HIS ARG GLU ALA ASN LYS GLY SEQRES 29 A 458 ALA ALA ALA ILE TRP TYR ALA PRO GLY LYS ALA ALA ASN SEQRES 30 A 458 ALA GLY GLY VAL ALA VAL SER GLY LEU GLU MET ALA GLN SEQRES 31 A 458 ASN SER ALA ARG LEU SER TRP THR ALA GLU GLU VAL ASP SEQRES 32 A 458 ALA ARG LEU LYS ASP ILE MET LYS SER CYS PHE GLN ASN SEQRES 33 A 458 GLY LEU ASP THR ALA LYS GLU TYR ALA THR PRO ALA ASP SEQRES 34 A 458 GLY ILE LEU PRO SER LEU VAL THR GLY SER ASN ILE ALA SEQRES 35 A 458 GLY PHE THR LYS VAL ALA ALA ALA MET LYS ASP GLN GLY SEQRES 36 A 458 ASP TRP TRP SEQRES 1 B 458 MET SER ASN LEU PRO VAL GLU PRO GLU PHE GLU GLN ALA SEQRES 2 B 458 TYR LYS GLU LEU ALA SER THR LEU GLU ASN SER THR LEU SEQRES 3 B 458 PHE GLN LYS ASN PRO GLU TYR ARG LYS ALA LEU ALA VAL SEQRES 4 B 458 VAL SER VAL PRO GLU ARG VAL ILE GLN PHE ARG VAL VAL SEQRES 5 B 458 TRP GLU ASN ASP LYS GLY GLU VAL GLN VAL ASN ARG GLY SEQRES 6 B 458 PHE ARG VAL GLN PHE ASN SER ALA LEU GLY PRO TYR LYS SEQRES 7 B 458 GLY GLY LEU ARG PHE HIS PRO SER VAL ASN LEU SER ILE SEQRES 8 B 458 LEU LYS PHE LEU GLY PHE GLU GLN ILE PHE LYS ASN ALA SEQRES 9 B 458 LEU THR GLY LEU ASN MET GLY GLY GLY LYS GLY GLY SER SEQRES 10 B 458 ASP PHE ASP PRO LYS GLY LYS SER ASP SER GLU ILE ARG SEQRES 11 B 458 ARG PHE CYS VAL ALA PHE MET THR GLU LEU CYS ARG HIS SEQRES 12 B 458 ILE GLY ALA ASP THR ASP VAL PRO ALA GLY ASP ILE GLY SEQRES 13 B 458 VAL THR GLY ARG GLU ILE GLY TYR LEU PHE GLY GLN TYR SEQRES 14 B 458 ARG LYS LEU ARG ASN SER TRP GLU GLY VAL LEU THR GLY SEQRES 15 B 458 LYS GLY GLY SER TRP GLY GLY SER LEU ILE ARG PRO GLU SEQRES 16 B 458 ALA THR GLY TYR GLY VAL VAL TYR TYR VAL GLU HIS MET SEQRES 17 B 458 ILE ALA HIS ALA THR ASN GLY ALA GLU SER PHE ALA GLY SEQRES 18 B 458 LYS ARG VAL ALA ILE SER GLY SER GLY ASN VAL ALA GLN SEQRES 19 B 458 TYR ALA ALA LEU LYS VAL ILE GLU LEU GLY GLY SER VAL SEQRES 20 B 458 VAL SER LEU SER ASP SER GLN GLY SER LEU ILE VAL ASN SEQRES 21 B 458 GLY GLU GLY SER PHE THR PRO ALA GLU ILE ASP ALA ILE SEQRES 22 B 458 ALA ALA LEU LYS VAL ASP ARG LYS GLN ILE ALA GLU LEU SEQRES 23 B 458 VAL THR ASP ALA ALA PHE ALA ASP LYS PHE THR TYR LEU SEQRES 24 B 458 PRO GLY GLN ARG PRO TRP VAL HIS VAL GLY ALA VAL ASP SEQRES 25 B 458 VAL ALA LEU PRO SER ALA THR GLN ASN GLU VAL SER GLY SEQRES 26 B 458 GLU GLU ALA GLN ALA LEU ILE ALA ALA GLY CYS LYS PHE SEQRES 27 B 458 ILE ALA GLU GLY SER ASN MET GLY CYS THR GLN ALA ALA SEQRES 28 B 458 ILE ASP ALA PHE GLU ALA HIS ARG GLU ALA ASN LYS GLY SEQRES 29 B 458 ALA ALA ALA ILE TRP TYR ALA PRO GLY LYS ALA ALA ASN SEQRES 30 B 458 ALA GLY GLY VAL ALA VAL SER GLY LEU GLU MET ALA GLN SEQRES 31 B 458 ASN SER ALA ARG LEU SER TRP THR ALA GLU GLU VAL ASP SEQRES 32 B 458 ALA ARG LEU LYS ASP ILE MET LYS SER CYS PHE GLN ASN SEQRES 33 B 458 GLY LEU ASP THR ALA LYS GLU TYR ALA THR PRO ALA ASP SEQRES 34 B 458 GLY ILE LEU PRO SER LEU VAL THR GLY SER ASN ILE ALA SEQRES 35 B 458 GLY PHE THR LYS VAL ALA ALA ALA MET LYS ASP GLN GLY SEQRES 36 B 458 ASP TRP TRP FORMUL 3 HOH *14(H2 O) HELIX 1 AA1 GLU A 7 ASN A 23 1 17 HELIX 2 AA2 THR A 25 ASN A 30 1 6 HELIX 3 AA3 GLU A 32 SER A 41 1 10 HELIX 4 AA4 ASN A 88 THR A 106 1 19 HELIX 5 AA5 SER A 125 CYS A 141 1 17 HELIX 6 AA6 ARG A 142 ILE A 144 5 3 HELIX 7 AA7 THR A 158 ASN A 174 1 17 HELIX 8 AA8 GLU A 195 THR A 213 1 19 HELIX 9 AA9 GLY A 230 LEU A 243 1 14 HELIX 10 AB1 THR A 266 ASP A 279 1 14 HELIX 11 AB2 PHE A 292 ASP A 294 5 3 HELIX 12 AB3 SER A 324 ALA A 334 1 11 HELIX 13 AB4 THR A 348 ASN A 362 1 15 HELIX 14 AB5 LYS A 363 ALA A 367 5 5 HELIX 15 AB6 PRO A 372 ASN A 377 1 6 HELIX 16 AB7 ALA A 378 ARG A 394 1 17 HELIX 17 AB8 THR A 398 ALA A 425 1 28 HELIX 18 AB9 SER A 434 GLY A 455 1 22 HELIX 19 AC1 GLU B 7 LEU B 21 1 15 HELIX 20 AC2 THR B 25 ASN B 30 1 6 HELIX 21 AC3 GLU B 32 SER B 41 1 10 HELIX 22 AC4 ASN B 88 THR B 106 1 19 HELIX 23 AC5 SER B 125 CYS B 141 1 17 HELIX 24 AC6 ARG B 142 ILE B 144 5 3 HELIX 25 AC7 THR B 158 ASN B 174 1 17 HELIX 26 AC8 GLU B 195 ALA B 212 1 18 HELIX 27 AC9 GLY B 230 LEU B 243 1 14 HELIX 28 AD1 THR B 266 ASP B 279 1 14 HELIX 29 AD2 ASP B 289 ASP B 294 1 6 HELIX 30 AD3 TRP B 305 GLY B 309 5 5 HELIX 31 AD4 GLY B 325 ILE B 332 1 8 HELIX 32 AD5 THR B 348 ASN B 362 1 15 HELIX 33 AD6 PRO B 372 ASN B 377 1 6 HELIX 34 AD7 ALA B 378 ARG B 394 1 17 HELIX 35 AD8 THR B 398 GLU B 423 1 26 HELIX 36 AD9 SER B 434 GLN B 454 1 21 SHEET 1 AA1 9 ASP A 149 ALA A 152 0 SHEET 2 AA1 9 TYR A 77 PHE A 83 1 N TYR A 77 O VAL A 150 SHEET 3 AA1 9 GLY A 112 SER A 117 1 O GLY A 115 N GLY A 80 SHEET 4 AA1 9 VAL A 60 ASN A 71 -1 N VAL A 68 O LYS A 114 SHEET 5 AA1 9 ARG A 45 GLU A 54 -1 N PHE A 49 O GLY A 65 SHEET 6 AA1 9 ARG B 45 GLU B 54 -1 O VAL B 46 N GLN A 48 SHEET 7 AA1 9 VAL B 60 ASN B 71 -1 O GLY B 65 N PHE B 49 SHEET 8 AA1 9 GLY B 112 SER B 117 -1 O LYS B 114 N VAL B 68 SHEET 9 AA1 9 LEU B 81 PHE B 83 1 N ARG B 82 O SER B 117 SHEET 1 AA2 7 PHE A 296 PRO A 300 0 SHEET 2 AA2 7 GLY A 255 VAL A 259 -1 N SER A 256 O LEU A 299 SHEET 3 AA2 7 SER A 246 ASP A 252 -1 N LEU A 250 O LEU A 257 SHEET 4 AA2 7 ARG A 223 SER A 227 1 N VAL A 224 O SER A 246 SHEET 5 AA2 7 VAL A 313 PRO A 316 1 O LEU A 315 N ALA A 225 SHEET 6 AA2 7 PHE A 338 ALA A 340 1 O PHE A 338 N ALA A 314 SHEET 7 AA2 7 TRP A 369 ALA A 371 1 O TRP A 369 N ILE A 339 SHEET 1 AA3 2 TYR B 77 LYS B 78 0 SHEET 2 AA3 2 ASP B 149 VAL B 150 1 O VAL B 150 N TYR B 77 SHEET 1 AA4 5 SER B 246 VAL B 247 0 SHEET 2 AA4 5 ARG B 223 SER B 227 1 N VAL B 224 O SER B 246 SHEET 3 AA4 5 VAL B 313 PRO B 316 1 O VAL B 313 N ALA B 225 SHEET 4 AA4 5 PHE B 338 ALA B 340 1 O PHE B 338 N ALA B 314 SHEET 5 AA4 5 TRP B 369 ALA B 371 1 O TRP B 369 N ILE B 339 SHEET 1 AA5 3 SER B 249 SER B 251 0 SHEET 2 AA5 3 SER B 256 ILE B 258 -1 O LEU B 257 N LEU B 250 SHEET 3 AA5 3 THR B 297 TYR B 298 -1 O THR B 297 N ILE B 258 CRYST1 143.590 143.590 143.590 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006964 0.00000 TER 3462 TRP A 458 TER 6924 TRP B 458 HETATM 6925 O HOH A 501 -68.175 31.570 17.890 1.00 52.52 O HETATM 6926 O HOH A 502 -45.049 -7.813 44.951 1.00 52.52 O HETATM 6927 O HOH A 503 -43.306 -11.171 30.109 1.00 52.52 O HETATM 6928 O HOH A 504 -72.667 6.897 13.841 1.00 52.52 O HETATM 6929 O HOH A 505 -41.044 6.273 18.250 1.00 53.14 O HETATM 6930 O HOH A 506 -38.453 29.382 26.362 1.00 52.52 O HETATM 6931 O HOH A 507 -50.657 -12.958 23.410 1.00 52.52 O HETATM 6932 O HOH A 508 -39.530 29.753 31.867 1.00 52.52 O HETATM 6933 O HOH A 509 -50.105 -14.035 25.527 1.00 52.52 O HETATM 6934 O HOH A 510 -29.011 29.025 32.396 1.00 52.52 O HETATM 6935 O HOH B 501 -41.241 31.206 0.280 1.00 52.52 O HETATM 6936 O HOH B 502 -35.531 30.749 23.408 1.00 52.52 O HETATM 6937 O HOH B 503 -40.102 34.420 29.166 1.00 52.52 O HETATM 6938 O HOH B 504 -11.964 49.339 -20.050 1.00 52.52 O MASTER 388 0 0 36 26 0 0 6 6896 2 0 72 END