HEADER TRANSFERASE 18-APR-24 8Z54 TITLE CRYSTAL STRUCTURE OF HUMAN SIRT5 IN COMPLEX WITH SUCCINYLATED PRX1 TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 5,SIR2-LIKE PROTEIN 5; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEROXIREDOXIN-1 FRAGMENT; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PRX1 FRAGMENT; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT5, SIR2L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SIRT5, SUCCINYL LYSINE, DEACYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.YOKOYAMA,Y.TAKAYAMA REVDAT 1 09-OCT-24 8Z54 0 JRNL AUTH T.YOKOYAMA,Y.TAKAYAMA,M.MIZUGUCHI,Y.NABESHIMA,K.KUSAKA JRNL TITL SIRT5 MUTANTS REVEAL THE ROLE OF CONSERVED ASPARAGINE AND JRNL TITL 2 GLUTAMINE RESIDUES IN THE NAD + -BINDING POCKET. JRNL REF FEBS LETT. V. 598 2269 2024 JRNL REFN ISSN 0014-5793 JRNL PMID 39031546 JRNL DOI 10.1002/1873-3468.14961 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3100 - 3.7200 0.99 2832 150 0.1727 0.1835 REMARK 3 2 3.7200 - 2.9500 0.99 2735 143 0.1942 0.2084 REMARK 3 3 2.9500 - 2.5800 1.00 2710 143 0.2125 0.2402 REMARK 3 4 2.5800 - 2.3400 0.99 2687 142 0.2067 0.2502 REMARK 3 5 2.3400 - 2.1800 1.00 2695 141 0.2028 0.2237 REMARK 3 6 2.1800 - 2.0500 1.00 2651 140 0.2071 0.2483 REMARK 3 7 2.0500 - 1.9500 1.00 2669 141 0.2078 0.2567 REMARK 3 8 1.9500 - 1.8600 1.00 2662 140 0.2148 0.2506 REMARK 3 9 1.8600 - 1.7900 1.00 2665 140 0.2232 0.2570 REMARK 3 10 1.7900 - 1.7300 1.00 2679 141 0.2161 0.2551 REMARK 3 11 1.7300 - 1.6700 1.00 2661 140 0.2248 0.2733 REMARK 3 12 1.6700 - 1.6300 1.00 2664 140 0.2279 0.2525 REMARK 3 13 1.6300 - 1.5800 1.00 2617 137 0.2375 0.2814 REMARK 3 14 1.5800 - 1.5400 1.00 2669 141 0.2483 0.3035 REMARK 3 15 1.5400 - 1.5100 1.00 2639 139 0.2618 0.3052 REMARK 3 16 1.5100 - 1.4800 0.99 2628 138 0.2658 0.2955 REMARK 3 17 1.4800 - 1.4500 0.97 2584 136 0.2903 0.3341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 NULL REMARK 3 ANGLE : 1.407 NULL REMARK 3 CHIRALITY : 0.102 311 REMARK 3 PLANARITY : 0.012 384 REMARK 3 DIHEDRAL : 14.776 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): 26.5317 1.2137 62.2695 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.1374 REMARK 3 T33: 0.1379 T12: -0.0285 REMARK 3 T13: 0.0163 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.5910 L22: 1.5940 REMARK 3 L33: 2.5761 L12: 0.2156 REMARK 3 L13: 0.1880 L23: 1.0654 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.0415 S13: -0.0084 REMARK 3 S21: -0.1698 S22: 0.2564 S23: -0.1732 REMARK 3 S31: 0.0071 S32: 0.2608 S33: 0.1714 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Z54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300047048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47857 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 38.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.610 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.1M TRIS-HCL PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.20350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.20350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.60100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.30600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.60100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.30600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.20350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.60100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.30600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.20350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.60100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.30600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 SER B 116 REMARK 465 LYS B 117 REMARK 465 GLU B 118 REMARK 465 TYR B 119 REMARK 465 LYS B 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 651 O HOH A 670 1.49 REMARK 500 O HOH A 503 O HOH A 510 1.71 REMARK 500 O HOH A 535 O HOH A 624 1.71 REMARK 500 O HOH A 503 O HOH A 577 1.71 REMARK 500 O HOH A 677 O HOH A 680 1.71 REMARK 500 O HOH A 641 O HOH A 699 1.71 REMARK 500 O HOH A 636 O HOH A 641 1.74 REMARK 500 O HOH A 551 O HOH A 639 1.88 REMARK 500 ND2 ASN A 283 O HOH A 501 1.90 REMARK 500 O HOH A 697 O HOH A 717 1.91 REMARK 500 O SER A 37 O HOH A 502 1.94 REMARK 500 O HOH A 636 O HOH A 699 1.95 REMARK 500 O VAL A 254 O HOH A 503 1.98 REMARK 500 O HOH A 673 O HOH A 678 2.00 REMARK 500 O HOH A 645 O HOH A 653 2.04 REMARK 500 O HOH A 506 O HOH A 570 2.04 REMARK 500 O HOH A 611 O HOH A 696 2.06 REMARK 500 NE2 GLN A 290 O HOH A 504 2.07 REMARK 500 OG SER A 252 O HOH A 505 2.09 REMARK 500 O HOH A 580 O HOH A 614 2.09 REMARK 500 O ALA A 258 O HOH A 506 2.11 REMARK 500 O HOH A 532 O HOH A 706 2.13 REMARK 500 OE2 GLU A 107 O HOH A 507 2.14 REMARK 500 NE2 GLN A 140 O HOH A 508 2.16 REMARK 500 O HOH A 603 O HOH A 679 2.16 REMARK 500 O THR A 295 O HOH A 509 2.17 REMARK 500 N VAL A 254 O HOH A 510 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 640 O HOH A 683 8546 1.75 REMARK 500 O HOH A 674 O HOH A 693 5445 1.78 REMARK 500 O HOH A 641 O HOH A 655 4556 2.00 REMARK 500 O HOH A 655 O HOH A 699 4556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 -117.46 51.37 REMARK 500 ASN A 94 77.23 -150.21 REMARK 500 SER A 168 -61.95 -98.70 REMARK 500 CYS A 212 -77.36 -105.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 720 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 106.5 REMARK 620 3 CYS A 207 SG 107.4 111.3 REMARK 620 4 CYS A 212 SG 99.8 116.5 114.0 REMARK 620 N 1 2 3 DBREF 8Z54 A 36 302 UNP Q9NXA8 SIR5_HUMAN 36 302 DBREF 8Z54 B 116 124 UNP Q06830 PRDX1_HUMAN 191 199 SEQADV 8Z54 MET A 29 UNP Q9NXA8 INITIATING METHIONINE SEQADV 8Z54 HIS A 30 UNP Q9NXA8 EXPRESSION TAG SEQADV 8Z54 HIS A 31 UNP Q9NXA8 EXPRESSION TAG SEQADV 8Z54 HIS A 32 UNP Q9NXA8 EXPRESSION TAG SEQADV 8Z54 HIS A 33 UNP Q9NXA8 EXPRESSION TAG SEQADV 8Z54 HIS A 34 UNP Q9NXA8 EXPRESSION TAG SEQADV 8Z54 HIS A 35 UNP Q9NXA8 EXPRESSION TAG SEQRES 1 A 274 MET HIS HIS HIS HIS HIS HIS PRO SER SER SER MET ALA SEQRES 2 A 274 ASP PHE ARG LYS PHE PHE ALA LYS ALA LYS HIS ILE VAL SEQRES 3 A 274 ILE ILE SER GLY ALA GLY VAL SER ALA GLU SER GLY VAL SEQRES 4 A 274 PRO THR PHE ARG GLY ALA GLY GLY TYR TRP ARG LYS TRP SEQRES 5 A 274 GLN ALA GLN ASP LEU ALA THR PRO LEU ALA PHE ALA HIS SEQRES 6 A 274 ASN PRO SER ARG VAL TRP GLU PHE TYR HIS TYR ARG ARG SEQRES 7 A 274 GLU VAL MET GLY SER LYS GLU PRO ASN ALA GLY HIS ARG SEQRES 8 A 274 ALA ILE ALA GLU CYS GLU THR ARG LEU GLY LYS GLN GLY SEQRES 9 A 274 ARG ARG VAL VAL VAL ILE THR GLN ASN ILE ASP GLU LEU SEQRES 10 A 274 HIS ARG LYS ALA GLY THR LYS ASN LEU LEU GLU ILE HIS SEQRES 11 A 274 GLY SER LEU PHE LYS THR ARG CYS THR SER CYS GLY VAL SEQRES 12 A 274 VAL ALA GLU ASN TYR LYS SER PRO ILE CYS PRO ALA LEU SEQRES 13 A 274 SER GLY LYS GLY ALA PRO GLU PRO GLY THR GLN ASP ALA SEQRES 14 A 274 SER ILE PRO VAL GLU LYS LEU PRO ARG CYS GLU GLU ALA SEQRES 15 A 274 GLY CYS GLY GLY LEU LEU ARG PRO HIS VAL VAL TRP PHE SEQRES 16 A 274 GLY GLU ASN LEU ASP PRO ALA ILE LEU GLU GLU VAL ASP SEQRES 17 A 274 ARG GLU LEU ALA HIS CYS ASP LEU CYS LEU VAL VAL GLY SEQRES 18 A 274 THR SER SER VAL VAL TYR PRO ALA ALA MET PHE ALA PRO SEQRES 19 A 274 GLN VAL ALA ALA ARG GLY VAL PRO VAL ALA GLU PHE ASN SEQRES 20 A 274 THR GLU THR THR PRO ALA THR ASN ARG PHE ARG PHE HIS SEQRES 21 A 274 PHE GLN GLY PRO CYS GLY THR THR LEU PRO GLU ALA LEU SEQRES 22 A 274 ALA SEQRES 1 B 9 SER LYS GLU TYR PHE SER SLL GLN LYS MODRES 8Z54 SLL B 122 LYS MODIFIED RESIDUE HET SLL B 122 16 HET ZN A 401 1 HET DMS A 402 4 HET DMS A 403 4 HETNAM SLL (2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-BUTANOYL) HETNAM 2 SLL AMINO]HEXANOIC ACID HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETSYN SLL 6-N-SUCCINYL-L-LYSINE FORMUL 2 SLL C10 H18 N2 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 DMS 2(C2 H6 O S) FORMUL 6 HOH *227(H2 O) HELIX 1 AA1 SER A 39 ALA A 50 1 12 HELIX 2 AA2 GLY A 58 GLU A 64 1 7 HELIX 3 AA3 GLN A 81 ALA A 86 1 6 HELIX 4 AA4 THR A 87 ASN A 94 1 8 HELIX 5 AA5 ASN A 94 MET A 109 1 16 HELIX 6 AA6 GLY A 110 LYS A 112 5 3 HELIX 7 AA7 ASN A 115 GLN A 131 1 17 HELIX 8 AA8 GLU A 144 GLY A 150 1 7 HELIX 9 AA9 CYS A 181 SER A 185 5 5 HELIX 10 AB1 PRO A 200 LEU A 204 5 5 HELIX 11 AB2 ASP A 228 CYS A 242 1 15 HELIX 12 AB3 PRO A 256 ALA A 258 5 3 HELIX 13 AB4 MET A 259 ALA A 265 1 7 HELIX 14 AB5 ALA A 266 GLY A 268 5 3 HELIX 15 AB6 ALA A 281 PHE A 285 5 5 HELIX 16 AB7 PRO A 292 LEU A 301 1 10 SHEET 1 AA1 6 LEU A 154 GLU A 156 0 SHEET 2 AA1 6 ARG A 134 THR A 139 1 N VAL A 137 O LEU A 155 SHEET 3 AA1 6 HIS A 52 SER A 57 1 N ILE A 55 O VAL A 136 SHEET 4 AA1 6 LEU A 244 VAL A 248 1 O VAL A 248 N ILE A 56 SHEET 5 AA1 6 VAL A 271 ASN A 275 1 O ALA A 272 N VAL A 247 SHEET 6 AA1 6 PHE A 287 GLN A 290 1 O PHE A 289 N GLU A 273 SHEET 1 AA2 3 VAL A 172 GLU A 174 0 SHEET 2 AA2 3 GLY A 159 CYS A 166 -1 N THR A 164 O ALA A 173 SHEET 3 AA2 3 LEU A 216 VAL A 220 -1 O ARG A 217 N ARG A 165 LINK C SER B 121 N SLL B 122 1555 1555 1.32 LINK C SLL B 122 N GLN B 123 1555 1555 1.34 LINK SG CYS A 166 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 169 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 207 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 212 ZN ZN A 401 1555 1555 2.34 CISPEP 1 SER A 178 PRO A 179 0 -0.03 CISPEP 2 TYR A 255 PRO A 256 0 -1.60 CRYST1 45.202 72.612 162.407 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006157 0.00000