data_8Z58 # _entry.id 8Z58 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8Z58 pdb_00008z58 10.2210/pdb8z58/pdb WWPDB D_1300047052 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8Z58 _pdbx_database_status.recvd_initial_deposition_date 2024-04-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email tyokoya3@pha.u-toyama.ac.jp _pdbx_contact_author.name_first Takeshi _pdbx_contact_author.name_last Yokoyama _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5362-8606 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yokoyama, T.' 1 ? 'Takayama, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs Lett.' _citation.journal_id_ASTM FEBLAL _citation.journal_id_CSD 0165 _citation.journal_id_ISSN 0014-5793 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 598 _citation.language ? _citation.page_first 2269 _citation.page_last 2280 _citation.title 'SIRT5 mutants reveal the role of conserved asparagine and glutamine residues in the NAD + -binding pocket.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/1873-3468.14961 _citation.pdbx_database_id_PubMed 39031546 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yokoyama, T.' 1 0000-0002-5362-8606 primary 'Takayama, Y.' 2 ? primary 'Mizuguchi, M.' 3 0000-0003-0450-0339 primary 'Nabeshima, Y.' 4 ? primary 'Kusaka, K.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NAD-dependent protein deacylase sirtuin-5, mitochondrial' 29999.221 1 2.3.1.- N141V ? ? 2 polymer syn 'Peroxiredoxin-1 fragment' 1246.365 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 34 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Regulatory protein SIR2 homolog 5,SIR2-like protein 5' 2 'Prx1 fragment' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MHHHHHHPSSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREV MGSKEPNAGHRAIAECETRLGKQGRRVVVITQVIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKG APEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARG VPVAEFNTETTPATNRFRFHFQGPCGTTLPEALA ; ;MHHHHHHPSSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREV MGSKEPNAGHRAIAECETRLGKQGRRVVVITQVIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKG APEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARG VPVAEFNTETTPATNRFRFHFQGPCGTTLPEALA ; A ? 2 'polypeptide(L)' no yes 'SKEYFS(SLL)QK' SKEYFSXQK B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'CHLORIDE ION' CL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 PRO n 1 9 SER n 1 10 SER n 1 11 SER n 1 12 MET n 1 13 ALA n 1 14 ASP n 1 15 PHE n 1 16 ARG n 1 17 LYS n 1 18 PHE n 1 19 PHE n 1 20 ALA n 1 21 LYS n 1 22 ALA n 1 23 LYS n 1 24 HIS n 1 25 ILE n 1 26 VAL n 1 27 ILE n 1 28 ILE n 1 29 SER n 1 30 GLY n 1 31 ALA n 1 32 GLY n 1 33 VAL n 1 34 SER n 1 35 ALA n 1 36 GLU n 1 37 SER n 1 38 GLY n 1 39 VAL n 1 40 PRO n 1 41 THR n 1 42 PHE n 1 43 ARG n 1 44 GLY n 1 45 ALA n 1 46 GLY n 1 47 GLY n 1 48 TYR n 1 49 TRP n 1 50 ARG n 1 51 LYS n 1 52 TRP n 1 53 GLN n 1 54 ALA n 1 55 GLN n 1 56 ASP n 1 57 LEU n 1 58 ALA n 1 59 THR n 1 60 PRO n 1 61 LEU n 1 62 ALA n 1 63 PHE n 1 64 ALA n 1 65 HIS n 1 66 ASN n 1 67 PRO n 1 68 SER n 1 69 ARG n 1 70 VAL n 1 71 TRP n 1 72 GLU n 1 73 PHE n 1 74 TYR n 1 75 HIS n 1 76 TYR n 1 77 ARG n 1 78 ARG n 1 79 GLU n 1 80 VAL n 1 81 MET n 1 82 GLY n 1 83 SER n 1 84 LYS n 1 85 GLU n 1 86 PRO n 1 87 ASN n 1 88 ALA n 1 89 GLY n 1 90 HIS n 1 91 ARG n 1 92 ALA n 1 93 ILE n 1 94 ALA n 1 95 GLU n 1 96 CYS n 1 97 GLU n 1 98 THR n 1 99 ARG n 1 100 LEU n 1 101 GLY n 1 102 LYS n 1 103 GLN n 1 104 GLY n 1 105 ARG n 1 106 ARG n 1 107 VAL n 1 108 VAL n 1 109 VAL n 1 110 ILE n 1 111 THR n 1 112 GLN n 1 113 VAL n 1 114 ILE n 1 115 ASP n 1 116 GLU n 1 117 LEU n 1 118 HIS n 1 119 ARG n 1 120 LYS n 1 121 ALA n 1 122 GLY n 1 123 THR n 1 124 LYS n 1 125 ASN n 1 126 LEU n 1 127 LEU n 1 128 GLU n 1 129 ILE n 1 130 HIS n 1 131 GLY n 1 132 SER n 1 133 LEU n 1 134 PHE n 1 135 LYS n 1 136 THR n 1 137 ARG n 1 138 CYS n 1 139 THR n 1 140 SER n 1 141 CYS n 1 142 GLY n 1 143 VAL n 1 144 VAL n 1 145 ALA n 1 146 GLU n 1 147 ASN n 1 148 TYR n 1 149 LYS n 1 150 SER n 1 151 PRO n 1 152 ILE n 1 153 CYS n 1 154 PRO n 1 155 ALA n 1 156 LEU n 1 157 SER n 1 158 GLY n 1 159 LYS n 1 160 GLY n 1 161 ALA n 1 162 PRO n 1 163 GLU n 1 164 PRO n 1 165 GLY n 1 166 THR n 1 167 GLN n 1 168 ASP n 1 169 ALA n 1 170 SER n 1 171 ILE n 1 172 PRO n 1 173 VAL n 1 174 GLU n 1 175 LYS n 1 176 LEU n 1 177 PRO n 1 178 ARG n 1 179 CYS n 1 180 GLU n 1 181 GLU n 1 182 ALA n 1 183 GLY n 1 184 CYS n 1 185 GLY n 1 186 GLY n 1 187 LEU n 1 188 LEU n 1 189 ARG n 1 190 PRO n 1 191 HIS n 1 192 VAL n 1 193 VAL n 1 194 TRP n 1 195 PHE n 1 196 GLY n 1 197 GLU n 1 198 ASN n 1 199 LEU n 1 200 ASP n 1 201 PRO n 1 202 ALA n 1 203 ILE n 1 204 LEU n 1 205 GLU n 1 206 GLU n 1 207 VAL n 1 208 ASP n 1 209 ARG n 1 210 GLU n 1 211 LEU n 1 212 ALA n 1 213 HIS n 1 214 CYS n 1 215 ASP n 1 216 LEU n 1 217 CYS n 1 218 LEU n 1 219 VAL n 1 220 VAL n 1 221 GLY n 1 222 THR n 1 223 SER n 1 224 SER n 1 225 VAL n 1 226 VAL n 1 227 TYR n 1 228 PRO n 1 229 ALA n 1 230 ALA n 1 231 MET n 1 232 PHE n 1 233 ALA n 1 234 PRO n 1 235 GLN n 1 236 VAL n 1 237 ALA n 1 238 ALA n 1 239 ARG n 1 240 GLY n 1 241 VAL n 1 242 PRO n 1 243 VAL n 1 244 ALA n 1 245 GLU n 1 246 PHE n 1 247 ASN n 1 248 THR n 1 249 GLU n 1 250 THR n 1 251 THR n 1 252 PRO n 1 253 ALA n 1 254 THR n 1 255 ASN n 1 256 ARG n 1 257 PHE n 1 258 ARG n 1 259 PHE n 1 260 HIS n 1 261 PHE n 1 262 GLN n 1 263 GLY n 1 264 PRO n 1 265 CYS n 1 266 GLY n 1 267 THR n 1 268 THR n 1 269 LEU n 1 270 PRO n 1 271 GLU n 1 272 ALA n 1 273 LEU n 1 274 ALA n 2 1 SER n 2 2 LYS n 2 3 GLU n 2 4 TYR n 2 5 PHE n 2 6 SER n 2 7 SLL n 2 8 GLN n 2 9 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 274 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SIRT5, SIR2L5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SLL 'L-peptide linking' n '(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid' 6-N-succinyl-L-lysine 'C10 H18 N2 O5' 246.260 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 29 ? ? ? A . n A 1 2 HIS 2 30 ? ? ? A . n A 1 3 HIS 3 31 ? ? ? A . n A 1 4 HIS 4 32 ? ? ? A . n A 1 5 HIS 5 33 ? ? ? A . n A 1 6 HIS 6 34 ? ? ? A . n A 1 7 HIS 7 35 ? ? ? A . n A 1 8 PRO 8 36 36 PRO PRO A . n A 1 9 SER 9 37 37 SER SER A . n A 1 10 SER 10 38 38 SER SER A . n A 1 11 SER 11 39 39 SER SER A . n A 1 12 MET 12 40 40 MET MET A . n A 1 13 ALA 13 41 41 ALA ALA A . n A 1 14 ASP 14 42 42 ASP ASP A . n A 1 15 PHE 15 43 43 PHE PHE A . n A 1 16 ARG 16 44 44 ARG ARG A . n A 1 17 LYS 17 45 45 LYS LYS A . n A 1 18 PHE 18 46 46 PHE PHE A . n A 1 19 PHE 19 47 47 PHE PHE A . n A 1 20 ALA 20 48 48 ALA ALA A . n A 1 21 LYS 21 49 49 LYS LYS A . n A 1 22 ALA 22 50 50 ALA ALA A . n A 1 23 LYS 23 51 51 LYS LYS A . n A 1 24 HIS 24 52 52 HIS HIS A . n A 1 25 ILE 25 53 53 ILE ILE A . n A 1 26 VAL 26 54 54 VAL VAL A . n A 1 27 ILE 27 55 55 ILE ILE A . n A 1 28 ILE 28 56 56 ILE ILE A . n A 1 29 SER 29 57 57 SER SER A . n A 1 30 GLY 30 58 58 GLY GLY A . n A 1 31 ALA 31 59 59 ALA ALA A . n A 1 32 GLY 32 60 60 GLY GLY A . n A 1 33 VAL 33 61 61 VAL VAL A . n A 1 34 SER 34 62 62 SER SER A . n A 1 35 ALA 35 63 63 ALA ALA A . n A 1 36 GLU 36 64 64 GLU GLU A . n A 1 37 SER 37 65 65 SER SER A . n A 1 38 GLY 38 66 66 GLY GLY A . n A 1 39 VAL 39 67 67 VAL VAL A . n A 1 40 PRO 40 68 68 PRO PRO A . n A 1 41 THR 41 69 69 THR THR A . n A 1 42 PHE 42 70 70 PHE PHE A . n A 1 43 ARG 43 71 71 ARG ARG A . n A 1 44 GLY 44 72 72 GLY GLY A . n A 1 45 ALA 45 73 73 ALA ALA A . n A 1 46 GLY 46 74 74 GLY GLY A . n A 1 47 GLY 47 75 75 GLY GLY A . n A 1 48 TYR 48 76 76 TYR TYR A . n A 1 49 TRP 49 77 77 TRP TRP A . n A 1 50 ARG 50 78 78 ARG ARG A . n A 1 51 LYS 51 79 79 LYS LYS A . n A 1 52 TRP 52 80 80 TRP TRP A . n A 1 53 GLN 53 81 81 GLN GLN A . n A 1 54 ALA 54 82 82 ALA ALA A . n A 1 55 GLN 55 83 83 GLN GLN A . n A 1 56 ASP 56 84 84 ASP ASP A . n A 1 57 LEU 57 85 85 LEU LEU A . n A 1 58 ALA 58 86 86 ALA ALA A . n A 1 59 THR 59 87 87 THR THR A . n A 1 60 PRO 60 88 88 PRO PRO A . n A 1 61 LEU 61 89 89 LEU LEU A . n A 1 62 ALA 62 90 90 ALA ALA A . n A 1 63 PHE 63 91 91 PHE PHE A . n A 1 64 ALA 64 92 92 ALA ALA A . n A 1 65 HIS 65 93 93 HIS HIS A . n A 1 66 ASN 66 94 94 ASN ASN A . n A 1 67 PRO 67 95 95 PRO PRO A . n A 1 68 SER 68 96 96 SER SER A . n A 1 69 ARG 69 97 97 ARG ARG A . n A 1 70 VAL 70 98 98 VAL VAL A . n A 1 71 TRP 71 99 99 TRP TRP A . n A 1 72 GLU 72 100 100 GLU GLU A . n A 1 73 PHE 73 101 101 PHE PHE A . n A 1 74 TYR 74 102 102 TYR TYR A . n A 1 75 HIS 75 103 103 HIS HIS A . n A 1 76 TYR 76 104 104 TYR TYR A . n A 1 77 ARG 77 105 105 ARG ARG A . n A 1 78 ARG 78 106 106 ARG ARG A . n A 1 79 GLU 79 107 107 GLU GLU A . n A 1 80 VAL 80 108 108 VAL VAL A . n A 1 81 MET 81 109 109 MET MET A . n A 1 82 GLY 82 110 110 GLY GLY A . n A 1 83 SER 83 111 111 SER SER A . n A 1 84 LYS 84 112 112 LYS LYS A . n A 1 85 GLU 85 113 113 GLU GLU A . n A 1 86 PRO 86 114 114 PRO PRO A . n A 1 87 ASN 87 115 115 ASN ASN A . n A 1 88 ALA 88 116 116 ALA ALA A . n A 1 89 GLY 89 117 117 GLY GLY A . n A 1 90 HIS 90 118 118 HIS HIS A . n A 1 91 ARG 91 119 119 ARG ARG A . n A 1 92 ALA 92 120 120 ALA ALA A . n A 1 93 ILE 93 121 121 ILE ILE A . n A 1 94 ALA 94 122 122 ALA ALA A . n A 1 95 GLU 95 123 123 GLU GLU A . n A 1 96 CYS 96 124 124 CYS CYS A . n A 1 97 GLU 97 125 125 GLU GLU A . n A 1 98 THR 98 126 126 THR THR A . n A 1 99 ARG 99 127 127 ARG ARG A . n A 1 100 LEU 100 128 128 LEU LEU A . n A 1 101 GLY 101 129 129 GLY GLY A . n A 1 102 LYS 102 130 130 LYS LYS A . n A 1 103 GLN 103 131 131 GLN GLN A . n A 1 104 GLY 104 132 132 GLY GLY A . n A 1 105 ARG 105 133 133 ARG ARG A . n A 1 106 ARG 106 134 134 ARG ARG A . n A 1 107 VAL 107 135 135 VAL VAL A . n A 1 108 VAL 108 136 136 VAL VAL A . n A 1 109 VAL 109 137 137 VAL VAL A . n A 1 110 ILE 110 138 138 ILE ILE A . n A 1 111 THR 111 139 139 THR THR A . n A 1 112 GLN 112 140 140 GLN GLN A . n A 1 113 VAL 113 141 141 VAL VAL A . n A 1 114 ILE 114 142 142 ILE ILE A . n A 1 115 ASP 115 143 143 ASP ASP A . n A 1 116 GLU 116 144 144 GLU GLU A . n A 1 117 LEU 117 145 145 LEU LEU A . n A 1 118 HIS 118 146 146 HIS HIS A . n A 1 119 ARG 119 147 147 ARG ARG A . n A 1 120 LYS 120 148 148 LYS LYS A . n A 1 121 ALA 121 149 149 ALA ALA A . n A 1 122 GLY 122 150 150 GLY GLY A . n A 1 123 THR 123 151 151 THR THR A . n A 1 124 LYS 124 152 152 LYS LYS A . n A 1 125 ASN 125 153 153 ASN ASN A . n A 1 126 LEU 126 154 154 LEU LEU A . n A 1 127 LEU 127 155 155 LEU LEU A . n A 1 128 GLU 128 156 156 GLU GLU A . n A 1 129 ILE 129 157 157 ILE ILE A . n A 1 130 HIS 130 158 158 HIS HIS A . n A 1 131 GLY 131 159 159 GLY GLY A . n A 1 132 SER 132 160 160 SER SER A . n A 1 133 LEU 133 161 161 LEU LEU A . n A 1 134 PHE 134 162 162 PHE PHE A . n A 1 135 LYS 135 163 163 LYS LYS A . n A 1 136 THR 136 164 164 THR THR A . n A 1 137 ARG 137 165 165 ARG ARG A . n A 1 138 CYS 138 166 166 CYS CYS A . n A 1 139 THR 139 167 167 THR THR A . n A 1 140 SER 140 168 168 SER SER A . n A 1 141 CYS 141 169 169 CYS CYS A . n A 1 142 GLY 142 170 170 GLY GLY A . n A 1 143 VAL 143 171 171 VAL VAL A . n A 1 144 VAL 144 172 172 VAL VAL A . n A 1 145 ALA 145 173 173 ALA ALA A . n A 1 146 GLU 146 174 174 GLU GLU A . n A 1 147 ASN 147 175 175 ASN ASN A . n A 1 148 TYR 148 176 176 TYR TYR A . n A 1 149 LYS 149 177 177 LYS LYS A . n A 1 150 SER 150 178 178 SER SER A . n A 1 151 PRO 151 179 179 PRO PRO A . n A 1 152 ILE 152 180 180 ILE ILE A . n A 1 153 CYS 153 181 181 CYS CYS A . n A 1 154 PRO 154 182 182 PRO PRO A . n A 1 155 ALA 155 183 183 ALA ALA A . n A 1 156 LEU 156 184 184 LEU LEU A . n A 1 157 SER 157 185 185 SER SER A . n A 1 158 GLY 158 186 186 GLY GLY A . n A 1 159 LYS 159 187 187 LYS LYS A . n A 1 160 GLY 160 188 188 GLY GLY A . n A 1 161 ALA 161 189 189 ALA ALA A . n A 1 162 PRO 162 190 190 PRO PRO A . n A 1 163 GLU 163 191 191 GLU GLU A . n A 1 164 PRO 164 192 192 PRO PRO A . n A 1 165 GLY 165 193 193 GLY GLY A . n A 1 166 THR 166 194 194 THR THR A . n A 1 167 GLN 167 195 195 GLN GLN A . n A 1 168 ASP 168 196 196 ASP ASP A . n A 1 169 ALA 169 197 197 ALA ALA A . n A 1 170 SER 170 198 198 SER SER A . n A 1 171 ILE 171 199 199 ILE ILE A . n A 1 172 PRO 172 200 200 PRO PRO A . n A 1 173 VAL 173 201 201 VAL VAL A . n A 1 174 GLU 174 202 202 GLU GLU A . n A 1 175 LYS 175 203 203 LYS LYS A . n A 1 176 LEU 176 204 204 LEU LEU A . n A 1 177 PRO 177 205 205 PRO PRO A . n A 1 178 ARG 178 206 206 ARG ARG A . n A 1 179 CYS 179 207 207 CYS CYS A . n A 1 180 GLU 180 208 208 GLU GLU A . n A 1 181 GLU 181 209 209 GLU GLU A . n A 1 182 ALA 182 210 210 ALA ALA A . n A 1 183 GLY 183 211 211 GLY GLY A . n A 1 184 CYS 184 212 212 CYS CYS A . n A 1 185 GLY 185 213 213 GLY GLY A . n A 1 186 GLY 186 214 214 GLY GLY A . n A 1 187 LEU 187 215 215 LEU LEU A . n A 1 188 LEU 188 216 216 LEU LEU A . n A 1 189 ARG 189 217 217 ARG ARG A . n A 1 190 PRO 190 218 218 PRO PRO A . n A 1 191 HIS 191 219 219 HIS HIS A . n A 1 192 VAL 192 220 220 VAL VAL A . n A 1 193 VAL 193 221 221 VAL VAL A . n A 1 194 TRP 194 222 222 TRP TRP A . n A 1 195 PHE 195 223 223 PHE PHE A . n A 1 196 GLY 196 224 224 GLY GLY A . n A 1 197 GLU 197 225 225 GLU GLU A . n A 1 198 ASN 198 226 226 ASN ASN A . n A 1 199 LEU 199 227 227 LEU LEU A . n A 1 200 ASP 200 228 228 ASP ASP A . n A 1 201 PRO 201 229 229 PRO PRO A . n A 1 202 ALA 202 230 230 ALA ALA A . n A 1 203 ILE 203 231 231 ILE ILE A . n A 1 204 LEU 204 232 232 LEU LEU A . n A 1 205 GLU 205 233 233 GLU GLU A . n A 1 206 GLU 206 234 234 GLU GLU A . n A 1 207 VAL 207 235 235 VAL VAL A . n A 1 208 ASP 208 236 236 ASP ASP A . n A 1 209 ARG 209 237 237 ARG ARG A . n A 1 210 GLU 210 238 238 GLU GLU A . n A 1 211 LEU 211 239 239 LEU LEU A . n A 1 212 ALA 212 240 240 ALA ALA A . n A 1 213 HIS 213 241 241 HIS HIS A . n A 1 214 CYS 214 242 242 CYS CYS A . n A 1 215 ASP 215 243 243 ASP ASP A . n A 1 216 LEU 216 244 244 LEU LEU A . n A 1 217 CYS 217 245 245 CYS CYS A . n A 1 218 LEU 218 246 246 LEU LEU A . n A 1 219 VAL 219 247 247 VAL VAL A . n A 1 220 VAL 220 248 248 VAL VAL A . n A 1 221 GLY 221 249 249 GLY GLY A . n A 1 222 THR 222 250 250 THR THR A . n A 1 223 SER 223 251 251 SER SER A . n A 1 224 SER 224 252 252 SER SER A . n A 1 225 VAL 225 253 253 VAL VAL A . n A 1 226 VAL 226 254 254 VAL VAL A . n A 1 227 TYR 227 255 255 TYR TYR A . n A 1 228 PRO 228 256 256 PRO PRO A . n A 1 229 ALA 229 257 257 ALA ALA A . n A 1 230 ALA 230 258 258 ALA ALA A . n A 1 231 MET 231 259 259 MET MET A . n A 1 232 PHE 232 260 260 PHE PHE A . n A 1 233 ALA 233 261 261 ALA ALA A . n A 1 234 PRO 234 262 262 PRO PRO A . n A 1 235 GLN 235 263 263 GLN GLN A . n A 1 236 VAL 236 264 264 VAL VAL A . n A 1 237 ALA 237 265 265 ALA ALA A . n A 1 238 ALA 238 266 266 ALA ALA A . n A 1 239 ARG 239 267 267 ARG ARG A . n A 1 240 GLY 240 268 268 GLY GLY A . n A 1 241 VAL 241 269 269 VAL VAL A . n A 1 242 PRO 242 270 270 PRO PRO A . n A 1 243 VAL 243 271 271 VAL VAL A . n A 1 244 ALA 244 272 272 ALA ALA A . n A 1 245 GLU 245 273 273 GLU GLU A . n A 1 246 PHE 246 274 274 PHE PHE A . n A 1 247 ASN 247 275 275 ASN ASN A . n A 1 248 THR 248 276 276 THR THR A . n A 1 249 GLU 249 277 277 GLU GLU A . n A 1 250 THR 250 278 278 THR THR A . n A 1 251 THR 251 279 279 THR THR A . n A 1 252 PRO 252 280 280 PRO PRO A . n A 1 253 ALA 253 281 281 ALA ALA A . n A 1 254 THR 254 282 282 THR THR A . n A 1 255 ASN 255 283 283 ASN ASN A . n A 1 256 ARG 256 284 284 ARG ARG A . n A 1 257 PHE 257 285 285 PHE PHE A . n A 1 258 ARG 258 286 286 ARG ARG A . n A 1 259 PHE 259 287 287 PHE PHE A . n A 1 260 HIS 260 288 288 HIS HIS A . n A 1 261 PHE 261 289 289 PHE PHE A . n A 1 262 GLN 262 290 290 GLN GLN A . n A 1 263 GLY 263 291 291 GLY GLY A . n A 1 264 PRO 264 292 292 PRO PRO A . n A 1 265 CYS 265 293 293 CYS CYS A . n A 1 266 GLY 266 294 294 GLY GLY A . n A 1 267 THR 267 295 295 THR THR A . n A 1 268 THR 268 296 296 THR THR A . n A 1 269 LEU 269 297 297 LEU LEU A . n A 1 270 PRO 270 298 298 PRO PRO A . n A 1 271 GLU 271 299 299 GLU GLU A . n A 1 272 ALA 272 300 300 ALA ALA A . n A 1 273 LEU 273 301 301 LEU LEU A . n A 1 274 ALA 274 302 302 ALA ALA A . n B 2 1 SER 1 116 ? ? ? B . n B 2 2 LYS 2 117 ? ? ? B . n B 2 3 GLU 3 118 ? ? ? B . n B 2 4 TYR 4 119 ? ? ? B . n B 2 5 PHE 5 120 120 PHE PHE B . n B 2 6 SER 6 121 121 SER SER B . n B 2 7 SLL 7 122 122 SLL LYS B . n B 2 8 GLN 8 123 123 GLN GLN B . n B 2 9 LYS 9 124 ? ? ? B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ? 2 SLL ? ? SLL ? ? 'SUBJECT OF INVESTIGATION' ? 3 ZN ? ? ZN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 401 401 ZN ZN A . D 4 CL 1 402 402 CL CL A . E 5 HOH 1 501 7 HOH HOH A . E 5 HOH 2 502 9 HOH HOH A . E 5 HOH 3 503 12 HOH HOH A . E 5 HOH 4 504 14 HOH HOH A . E 5 HOH 5 505 5 HOH HOH A . E 5 HOH 6 506 22 HOH HOH A . E 5 HOH 7 507 1 HOH HOH A . E 5 HOH 8 508 27 HOH HOH A . E 5 HOH 9 509 6 HOH HOH A . E 5 HOH 10 510 11 HOH HOH A . E 5 HOH 11 511 8 HOH HOH A . E 5 HOH 12 512 31 HOH HOH A . E 5 HOH 13 513 18 HOH HOH A . E 5 HOH 14 514 21 HOH HOH A . E 5 HOH 15 515 2 HOH HOH A . E 5 HOH 16 516 3 HOH HOH A . E 5 HOH 17 517 20 HOH HOH A . E 5 HOH 18 518 13 HOH HOH A . E 5 HOH 19 519 15 HOH HOH A . E 5 HOH 20 520 23 HOH HOH A . E 5 HOH 21 521 17 HOH HOH A . E 5 HOH 22 522 16 HOH HOH A . E 5 HOH 23 523 19 HOH HOH A . E 5 HOH 24 524 4 HOH HOH A . E 5 HOH 25 525 30 HOH HOH A . E 5 HOH 26 526 33 HOH HOH A . E 5 HOH 27 527 29 HOH HOH A . E 5 HOH 28 528 28 HOH HOH A . E 5 HOH 29 529 26 HOH HOH A . E 5 HOH 30 530 34 HOH HOH A . E 5 HOH 31 531 32 HOH HOH A . E 5 HOH 32 532 10 HOH HOH A . F 5 HOH 1 301 24 HOH HOH B . F 5 HOH 2 302 25 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B PHE 120 ? CG ? B PHE 5 CG 2 1 Y 1 B PHE 120 ? CD1 ? B PHE 5 CD1 3 1 Y 1 B PHE 120 ? CD2 ? B PHE 5 CD2 4 1 Y 1 B PHE 120 ? CE1 ? B PHE 5 CE1 5 1 Y 1 B PHE 120 ? CE2 ? B PHE 5 CE2 6 1 Y 1 B PHE 120 ? CZ ? B PHE 5 CZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8Z58 _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.916 _cell.length_a_esd ? _cell.length_b 73.430 _cell.length_b_esd ? _cell.length_c 163.774 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8Z58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8Z58 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '24% PEG 3350, 0.1M Tris-HCl pH 8.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-07-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8Z58 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 37.69 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10588 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.93 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.98 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.129 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1034 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.652 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.899 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8Z58 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.405 _refine.ls_d_res_low 37.690 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10586 _refine.ls_number_reflns_R_free 530 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.96 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2145 _refine.ls_R_factor_R_free 0.2582 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2122 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.09 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.31 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2070 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 2113 _refine_hist.d_res_high 2.405 _refine_hist.d_res_low 37.690 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 2129 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.720 ? 2884 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 24.205 ? 777 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.068 ? 312 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 380 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.4051 2.6471 . . 131 2475 99.00 . . . . 0.2669 . . . . . . . . . . . 0.3437 'X-RAY DIFFRACTION' 2.6471 3.0300 . . 131 2492 99.00 . . . . 0.2429 . . . . . . . . . . . 0.3134 'X-RAY DIFFRACTION' 3.0300 3.8169 . . 130 2485 99.00 . . . . 0.2129 . . . . . . . . . . . 0.2774 'X-RAY DIFFRACTION' 3.8169 37.690 . . 138 2604 98.00 . . . . 0.1907 . . . . . . . . . . . 0.2144 # _struct.entry_id 8Z58 _struct.title 'Crystal structure of human N141V-SIRT5 in complex with succinylated Prx1 fragment' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8Z58 _struct_keywords.text 'SIRT5, succinyl lysine, deacylase, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SIR5_HUMAN Q9NXA8 ? 1 ;PSSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPN AGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFN TETTPATNRFRFHFQGPCGTTLPEALA ; 36 2 UNP PRDX1_HUMAN Q06830 ? 2 SKEYFSKQK 191 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8Z58 A 8 ? 274 ? Q9NXA8 36 ? 302 ? 36 302 2 2 8Z58 B 1 ? 9 ? Q06830 191 ? 199 ? 116 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8Z58 MET A 1 ? UNP Q9NXA8 ? ? 'initiating methionine' 29 1 1 8Z58 HIS A 2 ? UNP Q9NXA8 ? ? 'expression tag' 30 2 1 8Z58 HIS A 3 ? UNP Q9NXA8 ? ? 'expression tag' 31 3 1 8Z58 HIS A 4 ? UNP Q9NXA8 ? ? 'expression tag' 32 4 1 8Z58 HIS A 5 ? UNP Q9NXA8 ? ? 'expression tag' 33 5 1 8Z58 HIS A 6 ? UNP Q9NXA8 ? ? 'expression tag' 34 6 1 8Z58 HIS A 7 ? UNP Q9NXA8 ? ? 'expression tag' 35 7 1 8Z58 VAL A 113 ? UNP Q9NXA8 ASN 141 'engineered mutation' 141 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 11 ? ALA A 22 ? SER A 39 ALA A 50 1 ? 12 HELX_P HELX_P2 AA2 GLY A 30 ? GLU A 36 ? GLY A 58 GLU A 64 1 ? 7 HELX_P HELX_P3 AA3 GLN A 53 ? ALA A 58 ? GLN A 81 ALA A 86 1 ? 6 HELX_P HELX_P4 AA4 THR A 59 ? ASN A 66 ? THR A 87 ASN A 94 1 ? 8 HELX_P HELX_P5 AA5 ASN A 66 ? MET A 81 ? ASN A 94 MET A 109 1 ? 16 HELX_P HELX_P6 AA6 ASN A 87 ? GLN A 103 ? ASN A 115 GLN A 131 1 ? 17 HELX_P HELX_P7 AA7 GLU A 116 ? GLY A 122 ? GLU A 144 GLY A 150 1 ? 7 HELX_P HELX_P8 AA8 CYS A 153 ? SER A 157 ? CYS A 181 SER A 185 5 ? 5 HELX_P HELX_P9 AA9 PRO A 172 ? LEU A 176 ? PRO A 200 LEU A 204 5 ? 5 HELX_P HELX_P10 AB1 ASP A 200 ? CYS A 214 ? ASP A 228 CYS A 242 1 ? 15 HELX_P HELX_P11 AB2 PRO A 228 ? ALA A 230 ? PRO A 256 ALA A 258 5 ? 3 HELX_P HELX_P12 AB3 MET A 231 ? ALA A 238 ? MET A 259 ALA A 266 1 ? 8 HELX_P HELX_P13 AB4 PRO A 264 ? LEU A 273 ? PRO A 292 LEU A 301 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B SER 6 C ? ? ? 1_555 B SLL 7 N ? ? B SER 121 B SLL 122 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? B SLL 7 C ? ? ? 1_555 B GLN 8 N ? ? B SLL 122 B GLN 123 1_555 ? ? ? ? ? ? ? 1.326 ? ? metalc1 metalc ? ? A CYS 138 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 166 A ZN 401 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc2 metalc ? ? A CYS 141 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 169 A ZN 401 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc3 metalc ? ? A CYS 179 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 207 A ZN 401 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc4 metalc ? ? A CYS 184 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 212 A ZN 401 1_555 ? ? ? ? ? ? ? 2.256 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 138 ? A CYS 166 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 141 ? A CYS 169 ? 1_555 113.4 ? 2 SG ? A CYS 138 ? A CYS 166 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 179 ? A CYS 207 ? 1_555 102.0 ? 3 SG ? A CYS 141 ? A CYS 169 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 179 ? A CYS 207 ? 1_555 111.0 ? 4 SG ? A CYS 138 ? A CYS 166 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 184 ? A CYS 212 ? 1_555 99.8 ? 5 SG ? A CYS 141 ? A CYS 169 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 184 ? A CYS 212 ? 1_555 112.8 ? 6 SG ? A CYS 179 ? A CYS 207 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 184 ? A CYS 212 ? 1_555 116.9 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id SLL _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 7 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id SLL _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 122 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id SLL _pdbx_modification_feature.type Succinylation _pdbx_modification_feature.category 'Named protein modification' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 44 A . ? GLY 72 A ALA 45 A ? ALA 73 A 1 -4.52 2 SER 150 A . ? SER 178 A PRO 151 A ? PRO 179 A 1 -2.84 3 TYR 227 A . ? TYR 255 A PRO 228 A ? PRO 256 A 1 -9.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 126 ? GLU A 128 ? LEU A 154 GLU A 156 AA1 2 ARG A 106 ? THR A 111 ? ARG A 134 THR A 139 AA1 3 HIS A 24 ? SER A 29 ? HIS A 52 SER A 57 AA1 4 LEU A 216 ? VAL A 220 ? LEU A 244 VAL A 248 AA1 5 VAL A 243 ? ASN A 247 ? VAL A 271 ASN A 275 AA1 6 PHE A 259 ? GLN A 262 ? PHE A 287 GLN A 290 AA2 1 VAL A 144 ? GLU A 146 ? VAL A 172 GLU A 174 AA2 2 GLY A 131 ? CYS A 138 ? GLY A 159 CYS A 166 AA2 3 LEU A 188 ? VAL A 192 ? LEU A 216 VAL A 220 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 127 ? O LEU A 155 N VAL A 109 ? N VAL A 137 AA1 2 3 O ILE A 110 ? O ILE A 138 N ILE A 27 ? N ILE A 55 AA1 3 4 N ILE A 28 ? N ILE A 56 O LEU A 218 ? O LEU A 246 AA1 4 5 N VAL A 219 ? N VAL A 247 O PHE A 246 ? O PHE A 274 AA1 5 6 N GLU A 245 ? N GLU A 273 O PHE A 261 ? O PHE A 289 AA2 1 2 O ALA A 145 ? O ALA A 173 N THR A 136 ? N THR A 164 AA2 2 3 N ARG A 137 ? N ARG A 165 O ARG A 189 ? O ARG A 217 # _pdbx_entry_details.entry_id 8Z58 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 73 ? ? 64.09 -4.60 2 1 ARG A 78 ? ? 69.55 -35.18 3 1 LYS A 79 ? ? -154.49 -17.03 4 1 ASN A 175 ? ? -161.99 115.15 5 1 CYS A 212 ? ? -100.57 -64.22 6 1 ARG A 267 ? ? -157.03 5.04 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id SLL _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id SLL _pdbx_struct_mod_residue.auth_seq_id 122 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.7632 _pdbx_refine_tls.origin_y 1.0993 _pdbx_refine_tls.origin_z 62.7373 _pdbx_refine_tls.T[1][1] 0.3889 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0118 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0091 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3546 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0369 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.3441 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.1166 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.6185 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.0295 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 2.8963 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.7860 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.2352 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0752 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0755 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0384 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.3361 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.1009 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0840 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0312 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.0930 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0188 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ;not resname HOH and not resname ANP and not resname ZN and not resname CL ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 29 ? A MET 1 2 1 Y 1 A HIS 30 ? A HIS 2 3 1 Y 1 A HIS 31 ? A HIS 3 4 1 Y 1 A HIS 32 ? A HIS 4 5 1 Y 1 A HIS 33 ? A HIS 5 6 1 Y 1 A HIS 34 ? A HIS 6 7 1 Y 1 A HIS 35 ? A HIS 7 8 1 Y 1 B SER 116 ? B SER 1 9 1 Y 1 B LYS 117 ? B LYS 2 10 1 Y 1 B GLU 118 ? B GLU 3 11 1 Y 1 B TYR 119 ? B TYR 4 12 1 Y 1 B LYS 124 ? B LYS 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 SLL C C N N 305 SLL N N N N 306 SLL O O N N 307 SLL CA C N S 308 SLL CB C N N 309 SLL CD C N N 310 SLL CE C N N 311 SLL CG C N N 312 SLL CK C N N 313 SLL CL C N N 314 SLL CP C N N 315 SLL CX C N N 316 SLL OX O N N 317 SLL NZ N N N 318 SLL OP1 O N N 319 SLL OP2 O N N 320 SLL OXT O N N 321 SLL H H N N 322 SLL H2 H N N 323 SLL HA H N N 324 SLL HB H N N 325 SLL HBA H N N 326 SLL HD H N N 327 SLL HDA H N N 328 SLL HE H N N 329 SLL HEA H N N 330 SLL HG H N N 331 SLL HGA H N N 332 SLL HK H N N 333 SLL HKA H N N 334 SLL HL H N N 335 SLL HLA H N N 336 SLL HNZ H N N 337 SLL HOP2 H N N 338 SLL HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 ZN ZN ZN N N 427 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SLL C O doub N N 290 SLL C CA sing N N 291 SLL C OXT sing N N 292 SLL N CA sing N N 293 SLL CA CB sing N N 294 SLL CB CG sing N N 295 SLL CD CE sing N N 296 SLL CD CG sing N N 297 SLL CE NZ sing N N 298 SLL CK CL sing N N 299 SLL CK CX sing N N 300 SLL CL CP sing N N 301 SLL CP OP1 doub N N 302 SLL CP OP2 sing N N 303 SLL CX OX doub N N 304 SLL CX NZ sing N N 305 SLL N H sing N N 306 SLL N H2 sing N N 307 SLL CA HA sing N N 308 SLL CB HB sing N N 309 SLL CB HBA sing N N 310 SLL CD HD sing N N 311 SLL CD HDA sing N N 312 SLL CE HE sing N N 313 SLL CE HEA sing N N 314 SLL CG HG sing N N 315 SLL CG HGA sing N N 316 SLL CK HK sing N N 317 SLL CK HKA sing N N 318 SLL CL HL sing N N 319 SLL CL HLA sing N N 320 SLL NZ HNZ sing N N 321 SLL OP2 HOP2 sing N N 322 SLL OXT HXT sing N N 323 THR N CA sing N N 324 THR N H sing N N 325 THR N H2 sing N N 326 THR CA C sing N N 327 THR CA CB sing N N 328 THR CA HA sing N N 329 THR C O doub N N 330 THR C OXT sing N N 331 THR CB OG1 sing N N 332 THR CB CG2 sing N N 333 THR CB HB sing N N 334 THR OG1 HG1 sing N N 335 THR CG2 HG21 sing N N 336 THR CG2 HG22 sing N N 337 THR CG2 HG23 sing N N 338 THR OXT HXT sing N N 339 TRP N CA sing N N 340 TRP N H sing N N 341 TRP N H2 sing N N 342 TRP CA C sing N N 343 TRP CA CB sing N N 344 TRP CA HA sing N N 345 TRP C O doub N N 346 TRP C OXT sing N N 347 TRP CB CG sing N N 348 TRP CB HB2 sing N N 349 TRP CB HB3 sing N N 350 TRP CG CD1 doub Y N 351 TRP CG CD2 sing Y N 352 TRP CD1 NE1 sing Y N 353 TRP CD1 HD1 sing N N 354 TRP CD2 CE2 doub Y N 355 TRP CD2 CE3 sing Y N 356 TRP NE1 CE2 sing Y N 357 TRP NE1 HE1 sing N N 358 TRP CE2 CZ2 sing Y N 359 TRP CE3 CZ3 doub Y N 360 TRP CE3 HE3 sing N N 361 TRP CZ2 CH2 doub Y N 362 TRP CZ2 HZ2 sing N N 363 TRP CZ3 CH2 sing Y N 364 TRP CZ3 HZ3 sing N N 365 TRP CH2 HH2 sing N N 366 TRP OXT HXT sing N N 367 TYR N CA sing N N 368 TYR N H sing N N 369 TYR N H2 sing N N 370 TYR CA C sing N N 371 TYR CA CB sing N N 372 TYR CA HA sing N N 373 TYR C O doub N N 374 TYR C OXT sing N N 375 TYR CB CG sing N N 376 TYR CB HB2 sing N N 377 TYR CB HB3 sing N N 378 TYR CG CD1 doub Y N 379 TYR CG CD2 sing Y N 380 TYR CD1 CE1 sing Y N 381 TYR CD1 HD1 sing N N 382 TYR CD2 CE2 doub Y N 383 TYR CD2 HD2 sing N N 384 TYR CE1 CZ doub Y N 385 TYR CE1 HE1 sing N N 386 TYR CE2 CZ sing Y N 387 TYR CE2 HE2 sing N N 388 TYR CZ OH sing N N 389 TYR OH HH sing N N 390 TYR OXT HXT sing N N 391 VAL N CA sing N N 392 VAL N H sing N N 393 VAL N H2 sing N N 394 VAL CA C sing N N 395 VAL CA CB sing N N 396 VAL CA HA sing N N 397 VAL C O doub N N 398 VAL C OXT sing N N 399 VAL CB CG1 sing N N 400 VAL CB CG2 sing N N 401 VAL CB HB sing N N 402 VAL CG1 HG11 sing N N 403 VAL CG1 HG12 sing N N 404 VAL CG1 HG13 sing N N 405 VAL CG2 HG21 sing N N 406 VAL CG2 HG22 sing N N 407 VAL CG2 HG23 sing N N 408 VAL OXT HXT sing N N 409 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6ACE _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8Z58 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.022771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013618 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006106 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL N O S ZN # loop_