HEADER HYDROLASE 18-APR-24 8Z5K TITLE SOLUTION STRUCTURE OF PA2072 CHASE4 MONOMER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL DIGUANYLATE CYCLASE/PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: PA2072; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHASE4, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.ZHANG,Z.LIN,J.F.ZHANG REVDAT 2 12-NOV-25 8Z5K 1 JRNL REVDAT 1 23-APR-25 8Z5K 0 JRNL AUTH Y.ZHANG,X.GAO,Y.XIAO,Y.DUAN,W.XIAO,Y.XU,T.YANG,H.ZHANG, JRNL AUTH 2 C.CHEN,S.SHI,X.C.SU,X.JIN,J.ZHAO,H.YANG,G.YIN,W.YUAN,Z.WANG, JRNL AUTH 3 W.HUANG,Z.LIN JRNL TITL EATP SENSING BY THE PURINERGIC RECEPTOR PA2072 FOR JRNL TITL 2 ALLOSTERIC MODULATION IN INTRACELLULAR C-DI-GMP SIGNALING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 64122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 41187079 JRNL DOI 10.1073/PNAS.2423664122 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Z5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046747. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] CHASE4, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D CCH TOCSY; 4D REMARK 210 13C,15N-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ; 600 MHZ; 850 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 246 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 8 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 86 14.58 52.92 REMARK 500 1 ASP A 89 68.69 -104.72 REMARK 500 1 ASN A 97 16.87 50.20 REMARK 500 1 LEU A 99 44.92 -146.54 REMARK 500 1 THR A 105 23.59 -142.63 REMARK 500 1 ASN A 139 1.27 50.64 REMARK 500 1 ASP A 166 94.49 -62.34 REMARK 500 1 THR A 180 -159.91 -81.06 REMARK 500 1 ALA A 215 -173.68 -61.76 REMARK 500 2 ALA A 41 -46.84 -161.22 REMARK 500 2 ASN A 97 10.19 55.76 REMARK 500 2 LEU A 99 47.37 -140.12 REMARK 500 2 THR A 106 43.34 -97.87 REMARK 500 2 ASP A 117 48.71 39.51 REMARK 500 2 ARG A 121 -59.85 -121.32 REMARK 500 2 LEU A 138 8.15 -150.63 REMARK 500 2 ASN A 139 -10.17 47.70 REMARK 500 2 THR A 180 -167.71 -119.22 REMARK 500 2 ALA A 215 -176.98 -63.03 REMARK 500 2 ASN A 216 101.12 -42.93 REMARK 500 3 HIS A 43 -10.03 -142.34 REMARK 500 3 ASP A 89 65.69 -105.23 REMARK 500 3 THR A 106 37.78 -99.36 REMARK 500 3 ARG A 121 -5.49 -141.27 REMARK 500 3 ASN A 139 6.76 51.14 REMARK 500 3 ASP A 164 78.99 -113.46 REMARK 500 3 ASP A 166 80.30 -66.91 REMARK 500 3 THR A 180 -165.19 -120.82 REMARK 500 3 SER A 181 29.99 48.38 REMARK 500 3 ALA A 215 -172.85 -63.16 REMARK 500 3 SER A 245 73.69 -154.10 REMARK 500 4 PHE A 76 40.79 -109.17 REMARK 500 4 VAL A 88 54.37 -142.84 REMARK 500 4 ASN A 97 10.09 50.19 REMARK 500 4 LEU A 99 37.39 -142.88 REMARK 500 4 THR A 105 22.91 -142.14 REMARK 500 4 ASP A 117 51.08 39.14 REMARK 500 4 ARG A 121 -75.39 -113.69 REMARK 500 4 ALA A 123 86.91 -152.27 REMARK 500 4 ASN A 139 3.13 47.61 REMARK 500 4 ASP A 166 98.43 -62.01 REMARK 500 4 THR A 180 -158.43 -81.80 REMARK 500 4 ASN A 216 101.77 -40.51 REMARK 500 4 SER A 245 54.03 -155.33 REMARK 500 5 SER A 40 -26.67 -162.89 REMARK 500 5 ASN A 97 -5.74 53.53 REMARK 500 5 THR A 105 24.15 -140.91 REMARK 500 5 ASP A 117 43.77 35.89 REMARK 500 5 ALA A 123 66.78 -156.38 REMARK 500 5 LEU A 138 9.94 -152.18 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36661 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF PA2072 CHASE4 MONOMER. DBREF 8Z5K A 41 246 UNP Q9I243 Q9I243_PSEAE 41 246 SEQADV 8Z5K GLY A 39 UNP Q9I243 EXPRESSION TAG SEQADV 8Z5K SER A 40 UNP Q9I243 EXPRESSION TAG SEQRES 1 A 208 GLY SER ALA ARG HIS GLN ASP ASP ILE ALA ILE GLU GLN SEQRES 2 A 208 SER HIS PHE TYR VAL GLU LYS ALA LEU GLN ASN ARG ARG SEQRES 3 A 208 GLU ASN SER GLU GLN PHE SER THR THR TYR SER PHE TRP SEQRES 4 A 208 THR ASP ALA TYR VAL TYR LEU GLY ASN ARG VAL ASP ALA SEQRES 5 A 208 ASP TRP ALA PHE THR LYS ASN ASN LEU GLY SER VAL LEU SEQRES 6 A 208 TYR THR THR ASN GLY TYR ASP GLY VAL PHE VAL ILE ASP SEQRES 7 A 208 ASP ARG GLY THR ARG TYR ALA MET LEU GLU GLY GLU LEU SEQRES 8 A 208 SER GLU ARG SER LEU ALA ASP SER LEU ASN ALA ASP THR SEQRES 9 A 208 GLY ASP ILE LEU ARG SER ALA ARG ARG ALA ALA VAL ASP SEQRES 10 A 208 GLU ALA ALA ILE SER ARG TYR VAL ASP PHE ASP GLY ALA SEQRES 11 A 208 PRO ALA ILE LEU VAL ALA SER ALA ILE LYS PRO THR SER SEQRES 12 A 208 ASP HIS ALA PRO ILE ASP LEU ALA LYS ALA SER VAL MET SEQRES 13 A 208 VAL PHE VAL ASP ARG LEU THR PRO ALA LYS LEU ALA LYS SEQRES 14 A 208 LEU GLY GLY ASP TYR GLY ILE ALA ASN LEU HIS LEU LEU SEQRES 15 A 208 ALA GLY GLY ALA ALA GLY ASP LYS GLU SER LEU ALA LEU SEQRES 16 A 208 GLU GLY THR PRO HIS ARG LEU ALA TRP VAL SER SER ARG HELIX 1 AA1 HIS A 43 TYR A 74 1 32 HELIX 2 AA2 TRP A 77 GLY A 85 1 9 HELIX 3 AA3 ASP A 89 LYS A 96 1 8 HELIX 4 AA4 GLY A 100 THR A 106 5 7 HELIX 5 AA5 ALA A 135 ASN A 139 5 5 HELIX 6 AA6 ASP A 141 ASP A 155 1 15 HELIX 7 AA7 THR A 201 GLY A 210 1 10 SHEET 1 AA1 5 THR A 120 LEU A 125 0 SHEET 2 AA1 5 GLY A 111 ILE A 115 -1 N VAL A 112 O MET A 124 SHEET 3 AA1 5 VAL A 193 ARG A 199 -1 O VAL A 195 N PHE A 113 SHEET 4 AA1 5 ALA A 170 ALA A 176 -1 N SER A 175 O MET A 194 SHEET 5 AA1 5 ILE A 159 VAL A 163 -1 N VAL A 163 O ALA A 170 SHEET 1 AA2 3 LEU A 217 LEU A 220 0 SHEET 2 AA2 3 ARG A 239 TRP A 242 -1 O ARG A 239 N LEU A 220 SHEET 3 AA2 3 SER A 230 ALA A 232 -1 N LEU A 231 O LEU A 240 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 3140 ARG A 246 ENDMDL MODEL 2 TER 3140 ARG A 246 ENDMDL MODEL 3 TER 3140 ARG A 246 ENDMDL MODEL 4 TER 3140 ARG A 246 ENDMDL MODEL 5 TER 3140 ARG A 246 ENDMDL MODEL 6 TER 3140 ARG A 246 ENDMDL MODEL 7 TER 3140 ARG A 246 ENDMDL MODEL 8 TER 3140 ARG A 246 ENDMDL MODEL 9 TER 3140 ARG A 246 ENDMDL MODEL 10 TER 3140 ARG A 246 ENDMDL MASTER 167 0 0 7 8 0 0 6 1598 1 0 16 END