HEADER VIRAL PROTEIN 26-APR-24 8ZB6 TITLE YEAST-EXPRESSED POLIO TYPE 2 STABILIZED VIRUS-LIKE PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VP3; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: VP2; COMPND 12 CHAIN: B; COMPND 13 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLIOVIRUS 2; SOURCE 3 ORGANISM_TAXID: 12083; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: POLIOVIRUS 2; SOURCE 8 ORGANISM_TAXID: 12083; SOURCE 9 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: POLIOVIRUS 2; SOURCE 13 ORGANISM_TAXID: 12083; SOURCE 14 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS POLIOVIRUS TYPE 2, VIRUS-LIKE PARTICLES, COMPACT STATE, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Q.HONG,Y.CONG REVDAT 3 23-JUL-25 8ZB6 1 REMARK REVDAT 2 25-DEC-24 8ZB6 1 JRNL REVDAT 1 18-SEP-24 8ZB6 0 JRNL AUTH Q.HONG,S.WANG,X.WANG,W.HAN,T.CHEN,Y.LIU,F.CHENG,S.QIN, JRNL AUTH 2 S.ZHAO,Q.LIU,Y.CONG,Z.HUANG JRNL TITL VACCINE POTENCY AND STRUCTURE OF YEAST-PRODUCED POLIO TYPE 2 JRNL TITL 2 STABILIZED VIRUS-LIKE PARTICLES. JRNL REF VACCINES (BASEL) V. 12 2024 JRNL REFN ESSN 2076-393X JRNL PMID 39340107 JRNL DOI 10.3390/VACCINES12091077 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 9860 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ZB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 06-MAY-24. REMARK 100 THE DEPOSITION ID IS D_1300044861. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT; POINT; POINT; POINT; REMARK 245 POINT; POINT; POINT; POINT; REMARK 245 POINT; POINT; POINT; POINT; REMARK 245 POINT; POINT; POINT; POINT REMARK 245 NAME OF SAMPLE : POLIOVIRUS 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : YEAST-EXPRESSED POLIO TYPE 2 REMARK 245 STABLIZED VIRUS-LIKE PARTICLES REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 2 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 2 -0.809017 -0.500000 0.309017 533.38398 REMARK 350 BIOMT1 3 -0.309017 -0.809017 0.500000 431.51670 REMARK 350 BIOMT2 3 -0.809017 0.500000 0.309017 266.69199 REMARK 350 BIOMT3 3 -0.500000 -0.309017 -0.809017 698.20869 REMARK 350 BIOMT1 4 -0.309017 -0.809017 -0.500000 698.20869 REMARK 350 BIOMT2 4 -0.809017 0.500000 -0.309017 431.51670 REMARK 350 BIOMT3 4 0.500000 0.309017 -0.809017 266.69199 REMARK 350 BIOMT1 5 0.500000 -0.309017 -0.809017 431.51670 REMARK 350 BIOMT2 5 -0.309017 0.809017 -0.500000 266.69199 REMARK 350 BIOMT3 5 0.809017 0.500000 0.309017 -164.82471 REMARK 350 BIOMT1 6 0.309017 -0.809017 -0.500000 533.38398 REMARK 350 BIOMT2 6 -0.809017 -0.500000 0.309017 533.38398 REMARK 350 BIOMT3 6 -0.500000 0.309017 -0.809017 533.38398 REMARK 350 BIOMT1 7 0.809017 -0.500000 -0.309017 266.69199 REMARK 350 BIOMT2 7 -0.500000 -0.309017 -0.809017 698.20869 REMARK 350 BIOMT3 7 0.309017 0.809017 -0.500000 101.86728 REMARK 350 BIOMT1 8 0.809017 -0.500000 0.309017 101.86727 REMARK 350 BIOMT2 8 0.500000 0.309017 -0.809017 266.69199 REMARK 350 BIOMT3 8 0.309017 0.809017 0.500000 -164.82471 REMARK 350 BIOMT1 9 0.309017 -0.809017 0.500000 266.69198 REMARK 350 BIOMT2 9 0.809017 0.500000 0.309017 -164.82471 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 101.86727 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 533.38397 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 533.38398 REMARK 350 BIOMT1 11 -0.809017 0.500000 -0.309017 431.51670 REMARK 350 BIOMT2 11 0.500000 0.309017 -0.809017 266.69199 REMARK 350 BIOMT3 11 -0.309017 -0.809017 -0.500000 698.20869 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 266.69199 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 -164.82471 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 431.51670 REMARK 350 BIOMT1 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 13 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 14 -0.809017 -0.500000 0.309017 533.38397 REMARK 350 BIOMT3 14 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 0.309017 266.69199 REMARK 350 BIOMT2 15 -0.500000 -0.309017 -0.809017 698.20869 REMARK 350 BIOMT3 15 -0.309017 -0.809017 0.500000 431.51670 REMARK 350 BIOMT1 16 -0.500000 0.309017 0.809017 101.86727 REMARK 350 BIOMT2 16 0.309017 -0.809017 0.500000 266.69198 REMARK 350 BIOMT3 16 0.809017 0.500000 0.309017 -164.82471 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 533.38398 REMARK 350 BIOMT2 17 0.000000 -1.000000 0.000000 533.38397 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 18 -0.500000 0.309017 -0.809017 533.38398 REMARK 350 BIOMT2 18 0.309017 -0.809017 -0.500000 533.38398 REMARK 350 BIOMT3 18 -0.809017 -0.500000 0.309017 533.38398 REMARK 350 BIOMT1 19 0.309017 0.809017 -0.500000 101.86728 REMARK 350 BIOMT2 19 0.809017 -0.500000 -0.309017 266.69199 REMARK 350 BIOMT3 19 -0.500000 -0.309017 -0.809017 698.20869 REMARK 350 BIOMT1 20 0.309017 0.809017 0.500000 -164.82471 REMARK 350 BIOMT2 20 0.809017 -0.500000 0.309017 101.86727 REMARK 350 BIOMT3 20 0.500000 0.309017 -0.809017 266.69199 REMARK 350 BIOMT1 21 -0.500000 -0.309017 0.809017 266.69198 REMARK 350 BIOMT2 21 0.309017 0.809017 0.500000 -164.82471 REMARK 350 BIOMT3 21 -0.809017 0.500000 -0.309017 431.51670 REMARK 350 BIOMT1 22 -0.809017 -0.500000 -0.309017 698.20869 REMARK 350 BIOMT2 22 -0.500000 0.309017 0.809017 101.86727 REMARK 350 BIOMT3 22 -0.309017 0.809017 -0.500000 266.69199 REMARK 350 BIOMT1 23 0.000000 0.000000 -1.000000 533.38398 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 533.38397 REMARK 350 BIOMT3 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.500000 0.309017 -0.809017 533.38398 REMARK 350 BIOMT3 24 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 -164.82471 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 101.86728 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 266.69199 REMARK 350 BIOMT1 26 -0.309017 0.809017 -0.500000 266.69199 REMARK 350 BIOMT2 26 -0.809017 -0.500000 -0.309017 698.20869 REMARK 350 BIOMT3 26 -0.500000 0.309017 0.809017 101.86728 REMARK 350 BIOMT1 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 533.38398 REMARK 350 BIOMT3 27 -1.000000 0.000000 0.000000 533.38398 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 533.38398 REMARK 350 BIOMT1 29 -0.809017 0.500000 0.309017 266.69199 REMARK 350 BIOMT2 29 0.500000 0.309017 0.809017 -164.82471 REMARK 350 BIOMT3 29 0.309017 0.809017 -0.500000 101.86728 REMARK 350 BIOMT1 30 -0.809017 0.500000 -0.309017 431.51670 REMARK 350 BIOMT2 30 -0.500000 -0.309017 0.809017 266.69198 REMARK 350 BIOMT3 30 0.309017 0.809017 0.500000 -164.82471 REMARK 350 BIOMT1 31 0.000000 -1.000000 0.000000 533.38398 REMARK 350 BIOMT2 31 0.000000 0.000000 -1.000000 533.38398 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.309017 -0.809017 -0.500000 533.38398 REMARK 350 BIOMT2 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 33 0.809017 -0.500000 -0.309017 266.69199 REMARK 350 BIOMT2 33 0.500000 0.309017 0.809017 -164.82471 REMARK 350 BIOMT3 33 -0.309017 -0.809017 0.500000 431.51670 REMARK 350 BIOMT1 34 0.809017 -0.500000 0.309017 101.86727 REMARK 350 BIOMT2 34 -0.500000 -0.309017 0.809017 266.69199 REMARK 350 BIOMT3 34 -0.309017 -0.809017 -0.500000 698.20869 REMARK 350 BIOMT1 35 0.309017 -0.809017 0.500000 266.69199 REMARK 350 BIOMT2 35 -0.809017 -0.500000 -0.309017 698.20869 REMARK 350 BIOMT3 35 0.500000 -0.309017 -0.809017 431.51670 REMARK 350 BIOMT1 36 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 36 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 36 0.309017 -0.809017 -0.500000 533.38398 REMARK 350 BIOMT1 37 0.500000 0.309017 0.809017 -164.82471 REMARK 350 BIOMT2 37 -0.309017 -0.809017 0.500000 431.51670 REMARK 350 BIOMT3 37 0.809017 -0.500000 -0.309017 266.69199 REMARK 350 BIOMT1 38 -0.500000 -0.309017 0.809017 266.69199 REMARK 350 BIOMT2 38 -0.309017 -0.809017 -0.500000 698.20869 REMARK 350 BIOMT3 38 0.809017 -0.500000 0.309017 101.86728 REMARK 350 BIOMT1 39 -0.809017 -0.500000 -0.309017 698.20869 REMARK 350 BIOMT2 39 0.500000 -0.309017 -0.809017 431.51670 REMARK 350 BIOMT3 39 0.309017 -0.809017 0.500000 266.69199 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 533.38398 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 533.38397 REMARK 350 BIOMT1 41 -0.500000 0.309017 -0.809017 533.38398 REMARK 350 BIOMT2 41 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 41 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 -0.500000 101.86728 REMARK 350 BIOMT2 42 -0.809017 0.500000 0.309017 266.69199 REMARK 350 BIOMT3 42 0.500000 0.309017 0.809017 -164.82471 REMARK 350 BIOMT1 43 0.309017 0.809017 0.500000 -164.82471 REMARK 350 BIOMT2 43 -0.809017 0.500000 -0.309017 431.51670 REMARK 350 BIOMT3 43 -0.500000 -0.309017 0.809017 266.69199 REMARK 350 BIOMT1 44 -0.500000 0.309017 0.809017 101.86727 REMARK 350 BIOMT2 44 -0.309017 0.809017 -0.500000 266.69199 REMARK 350 BIOMT3 44 -0.809017 -0.500000 -0.309017 698.20869 REMARK 350 BIOMT1 45 -1.000000 0.000000 0.000000 533.38397 REMARK 350 BIOMT2 45 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 533.38398 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 -1.000000 0.000000 0.000000 533.38398 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 533.38398 REMARK 350 BIOMT1 47 -0.809017 -0.500000 0.309017 533.38398 REMARK 350 BIOMT2 47 -0.500000 0.309017 -0.809017 533.38398 REMARK 350 BIOMT3 47 0.309017 -0.809017 -0.500000 533.38398 REMARK 350 BIOMT1 48 -0.500000 -0.309017 -0.809017 698.20869 REMARK 350 BIOMT2 48 0.309017 0.809017 -0.500000 101.86728 REMARK 350 BIOMT3 48 0.809017 -0.500000 -0.309017 266.69199 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 266.69199 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 -164.82471 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 101.86727 REMARK 350 BIOMT1 50 0.809017 0.500000 0.309017 -164.82471 REMARK 350 BIOMT2 50 -0.500000 0.309017 0.809017 101.86727 REMARK 350 BIOMT3 50 0.309017 -0.809017 0.500000 266.69199 REMARK 350 BIOMT1 51 0.809017 0.500000 0.309017 -164.82471 REMARK 350 BIOMT2 51 0.500000 -0.309017 -0.809017 431.51670 REMARK 350 BIOMT3 51 -0.309017 0.809017 -0.500000 266.69199 REMARK 350 BIOMT1 52 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 52 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 52 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.500000 0.309017 533.38397 REMARK 350 BIOMT2 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 -0.809017 698.20869 REMARK 350 BIOMT2 54 -0.309017 -0.809017 0.500000 431.51670 REMARK 350 BIOMT3 54 -0.809017 0.500000 0.309017 266.69199 REMARK 350 BIOMT1 55 0.500000 0.309017 -0.809017 266.69199 REMARK 350 BIOMT2 55 -0.309017 -0.809017 -0.500000 698.20869 REMARK 350 BIOMT3 55 -0.809017 0.500000 -0.309017 431.51670 REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 698.20869 REMARK 350 BIOMT2 56 0.809017 -0.500000 0.309017 101.86727 REMARK 350 BIOMT3 56 -0.500000 -0.309017 0.809017 266.69199 REMARK 350 BIOMT1 57 0.500000 -0.309017 -0.809017 431.51670 REMARK 350 BIOMT2 57 0.309017 -0.809017 0.500000 266.69199 REMARK 350 BIOMT3 57 -0.809017 -0.500000 -0.309017 698.20869 REMARK 350 BIOMT1 58 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 533.38397 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 533.38398 REMARK 350 BIOMT1 59 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 59 0.309017 -0.809017 -0.500000 533.38397 REMARK 350 BIOMT3 59 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 -0.809017 0.500000 431.51670 REMARK 350 BIOMT2 60 0.809017 -0.500000 -0.309017 266.69199 REMARK 350 BIOMT3 60 0.500000 0.309017 0.809017 -164.82471 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 ASN A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 ASN A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 PRO A 28 REMARK 465 ASP A 29 REMARK 465 THR A 30 REMARK 465 GLN A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 HIS A 37 REMARK 465 SER A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 40 REMARK 465 ILE A 41 REMARK 465 PRO A 42 REMARK 465 ALA A 43 REMARK 465 LEU A 44 REMARK 465 THR A 45 REMARK 465 ALA A 46 REMARK 465 VAL A 47 REMARK 465 GLU A 48 REMARK 465 THR A 49 REMARK 465 GLY A 50 REMARK 465 ALA A 51 REMARK 465 THR A 52 REMARK 465 ASN A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 55 REMARK 465 VAL A 56 REMARK 465 PRO A 57 REMARK 465 SER A 58 REMARK 465 ASP A 59 REMARK 465 THR A 60 REMARK 465 VAL A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 ARG A 64 REMARK 465 HIS A 65 REMARK 465 VAL A 66 REMARK 465 ILE A 67 REMARK 465 GLN A 68 REMARK 465 MET C 236 REMARK 465 PRO C 237 REMARK 465 GLN C 238 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 ASN B 3 REMARK 465 ILE B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ARG B 12 REMARK 465 GLU B 46 REMARK 465 ALA B 47 REMARK 465 ASN B 48 REMARK 465 PRO B 49 REMARK 465 VAL B 50 REMARK 465 ASP B 51 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 185 O ALA A 189 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 71 -66.70 60.84 REMARK 500 ALA A 231 -144.60 43.90 REMARK 500 CYS A 270 71.73 61.38 REMARK 500 ARG C 197 174.95 176.50 REMARK 500 LEU C 224 65.70 61.58 REMARK 500 ASN B 30 -138.11 57.70 REMARK 500 ASP B 57 -136.31 62.37 REMARK 500 ALA B 104 141.27 -171.15 REMARK 500 ALA B 239 -124.40 44.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39895 RELATED DB: EMDB REMARK 900 YEAST-EXPRESSED POLIO TYPE 2 STABILIZED VIRUS-LIKE PARTICLES DBREF 8ZB6 A 1 301 UNP Q80I02 Q80I02_9ENTO 579 879 DBREF 8ZB6 C 1 238 UNP J3SGQ4 J3SGQ4_9ENTO 341 578 DBREF 8ZB6 B 1 271 UNP Q80I02 Q80I02_9ENTO 70 340 SEQADV 8ZB6 ILE A 41 UNP Q80I02 THR 619 CONFLICT SEQADV 8ZB6 LEU A 134 UNP Q80I02 PHE 712 CONFLICT SEQADV 8ZB6 PHE A 159 UNP Q80I02 TYR 737 CONFLICT SEQADV 8ZB6 ASN C 59 UNP J3SGQ4 SER 399 CONFLICT SEQADV 8ZB6 PHE C 85 UNP J3SGQ4 LEU 425 CONFLICT SEQADV 8ZB6 LEU C 178 UNP J3SGQ4 GLN 518 CONFLICT SEQRES 1 A 301 GLY LEU GLY ASP LEU ILE GLU GLY VAL VAL GLU GLY VAL SEQRES 2 A 301 THR ARG ASN ALA LEU THR PRO LEU THR PRO ALA ASN ASN SEQRES 3 A 301 LEU PRO ASP THR GLN SER SER GLY PRO ALA HIS SER LYS SEQRES 4 A 301 GLU ILE PRO ALA LEU THR ALA VAL GLU THR GLY ALA THR SEQRES 5 A 301 ASN PRO LEU VAL PRO SER ASP THR VAL GLN THR ARG HIS SEQRES 6 A 301 VAL ILE GLN LYS ARG THR ARG SER GLU SER THR VAL GLU SEQRES 7 A 301 SER PHE PHE ALA ARG GLY ALA CYS VAL ALA ILE ILE GLU SEQRES 8 A 301 VAL ASP ASN ASP ALA PRO THR LYS ARG ALA SER LYS LEU SEQRES 9 A 301 PHE SER VAL TRP LYS ILE THR TYR LYS ASP THR VAL GLN SEQRES 10 A 301 LEU ARG ARG LYS LEU GLU PHE PHE THR TYR SER ARG PHE SEQRES 11 A 301 ASP MET GLU LEU THR PHE VAL VAL THR SER ASN TYR THR SEQRES 12 A 301 ASP ALA ASN ASN GLY HIS ALA LEU ASN GLN VAL TYR GLN SEQRES 13 A 301 ILE MET PHE ILE PRO PRO GLY ALA PRO ILE PRO GLY LYS SEQRES 14 A 301 TRP ASN ASP TYR THR TRP GLN THR SER SER ASN PRO SER SEQRES 15 A 301 VAL PHE TYR THR TYR GLY ALA PRO PRO ALA ARG ILE SER SEQRES 16 A 301 VAL PRO TYR VAL GLY ILE ALA ASN ALA TYR SER HIS PHE SEQRES 17 A 301 TYR ASP GLY PHE ALA LYS VAL PRO LEU ALA GLY GLN ALA SEQRES 18 A 301 SER THR GLU GLY ASP SER LEU TYR GLY ALA ALA SER LEU SEQRES 19 A 301 ASN ASP PHE GLY SER LEU ALA VAL ARG VAL VAL ASN ASP SEQRES 20 A 301 HIS ASN PRO THR LYS LEU THR SER LYS ILE ARG VAL TYR SEQRES 21 A 301 MET LYS PRO LYS HIS VAL ARG VAL TRP CYS PRO ARG PRO SEQRES 22 A 301 PRO ARG ALA VAL PRO TYR TYR GLY PRO GLY VAL ASP TYR SEQRES 23 A 301 LYS ASP GLY LEU ALA PRO LEU PRO GLU LYS GLY LEU THR SEQRES 24 A 301 THR TYR SEQRES 1 C 238 GLY LEU PRO VAL LEU ASN THR PRO GLY SER ASN GLN TYR SEQRES 2 C 238 LEU THR ALA ASP ASN TYR GLN SER PRO CYS ALA ILE PRO SEQRES 3 C 238 GLU PHE ASP VAL THR PRO PRO ILE ASP ILE PRO GLY GLU SEQRES 4 C 238 VAL ARG ASN MET MET GLU LEU ALA GLU ILE ASP THR MET SEQRES 5 C 238 ILE PRO LEU ASN LEU THR ASN GLN ARG LYS ASN THR MET SEQRES 6 C 238 ASP MET TYR ARG VAL GLU LEU ASN ASP ALA ALA HIS SER SEQRES 7 C 238 ASP THR PRO ILE LEU CYS PHE SER LEU SER PRO ALA SER SEQRES 8 C 238 ASP PRO ARG LEU ALA HIS THR MET LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR THR HIS TRP ALA GLY SER LEU LYS PHE THR SEQRES 10 C 238 PHE LEU PHE CYS GLY SER MET MET ALA THR GLY LYS LEU SEQRES 11 C 238 LEU VAL SER TYR ALA PRO PRO GLY ALA GLU ALA PRO LYS SEQRES 12 C 238 SER ARG LYS GLU ALA MET LEU GLY THR HIS VAL ILE TRP SEQRES 13 C 238 ASP ILE GLY LEU GLN SER SER CYS THR MET VAL VAL PRO SEQRES 14 C 238 TRP ILE SER ASN THR THR TYR ARG LEU THR ILE ASN ASP SEQRES 15 C 238 SER PHE THR GLU GLY GLY TYR ILE SER MET PHE TYR GLN SEQRES 16 C 238 THR ARG VAL VAL VAL PRO LEU SER THR PRO ARG LYS MET SEQRES 17 C 238 ASP ILE LEU GLY PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU ARG ASP THR THR HIS ILE SER GLN GLU SEQRES 19 C 238 ALA MET PRO GLN SEQRES 1 B 271 SER PRO ASN ILE GLU ALA CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 271 MET GLN LEU THR LEU GLY ASN SER THR ILE THR THR GLN SEQRES 3 B 271 GLU ALA ALA ASN SER VAL VAL ALA TYR GLY ARG TRP PRO SEQRES 4 B 271 GLU TYR ILE LYS ASP SER GLU ALA ASN PRO VAL ASP GLN SEQRES 5 B 271 PRO THR GLU PRO ASP VAL ALA ALA CYS ARG PHE TYR THR SEQRES 6 B 271 LEU ASP THR VAL THR TRP ARG LYS GLU SER ARG GLY TRP SEQRES 7 B 271 TRP TRP LYS LEU PRO ASP ALA LEU LYS ASP MET GLY LEU SEQRES 8 B 271 PHE GLY GLN ASN MET PHE TYR HIS TYR LEU GLY ARG ALA SEQRES 9 B 271 GLY TYR THR VAL HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 B 271 HIS GLN GLY ALA LEU GLY VAL PHE ALA VAL PRO GLU MET SEQRES 11 B 271 CYS LEU ALA GLY ASP SER THR THR HIS MET PHE THR LYS SEQRES 12 B 271 TYR GLU ASN ALA ASN PRO GLY GLU LYS GLY GLY GLU PHE SEQRES 13 B 271 LYS GLY SER PHE THR LEU ASP THR ASN ALA THR ASN PRO SEQRES 14 B 271 ALA ARG ASN PHE CYS PRO VAL ASP TYR LEU PHE GLY SER SEQRES 15 B 271 GLY VAL LEU ALA GLY ASN ALA PHE VAL TYR PRO HIS GLN SEQRES 16 B 271 ILE ILE ASN LEU ARG THR ASN ASN CYS ALA THR LEU VAL SEQRES 17 B 271 LEU PRO TYR VAL ASN SER LEU SER ILE ASP SER MET THR SEQRES 18 B 271 LYS HIS ASN ASN TRP GLY ILE ALA ILE LEU PRO LEU ALA SEQRES 19 B 271 PRO LEU ASP PHE ALA THR GLU SER SER THR GLU ILE PRO SEQRES 20 B 271 ILE THR LEU THR ILE ALA PRO MET CYS CYS GLU PHE ASN SEQRES 21 B 271 GLY LEU ARG ASN ILE THR VAL PRO ARG THR GLN HET SPH A 401 21 HETNAM SPH SPHINGOSINE FORMUL 4 SPH C18 H37 N O2 HELIX 1 AA1 THR A 76 ALA A 82 1 7 HELIX 2 AA2 VAL A 116 GLU A 123 1 8 HELIX 3 AA3 ASP A 172 THR A 177 5 6 HELIX 4 AA4 MET C 43 GLU C 48 1 6 HELIX 5 AA5 MET C 65 MET C 67 5 3 HELIX 6 AA6 ASP C 92 HIS C 97 1 6 HELIX 7 AA7 THR C 98 TYR C 106 1 9 HELIX 8 AA8 SER C 144 MET C 149 1 6 HELIX 9 AA9 ASP C 182 GLU C 186 5 5 HELIX 10 AB1 TYR B 35 ARG B 37 5 3 HELIX 11 AB2 PRO B 56 ALA B 60 5 5 HELIX 12 AB3 PRO B 83 LYS B 87 5 5 HELIX 13 AB4 MET B 89 TYR B 98 1 10 HELIX 14 AB5 LYS B 143 ASN B 148 1 6 HELIX 15 AB6 LEU B 185 TYR B 192 5 8 SHEET 1 AA1 4 ALA A 85 ASN A 94 0 SHEET 2 AA1 4 LEU A 253 PRO A 271 -1 O SER A 255 N VAL A 92 SHEET 3 AA1 4 PHE A 125 TYR A 142 -1 N THR A 126 O CYS A 270 SHEET 4 AA1 4 TYR A 205 SER A 206 -1 O TYR A 205 N SER A 128 SHEET 1 AA2 4 ALA A 192 VAL A 196 0 SHEET 2 AA2 4 PHE A 125 TYR A 142 -1 N MET A 132 O VAL A 196 SHEET 3 AA2 4 LEU A 253 PRO A 271 -1 O CYS A 270 N THR A 126 SHEET 4 AA2 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 268 SHEET 1 AA3 4 PHE A 105 LYS A 109 0 SHEET 2 AA3 4 SER A 239 VAL A 244 -1 O LEU A 240 N TRP A 108 SHEET 3 AA3 4 VAL A 154 ILE A 160 -1 N ILE A 160 O SER A 239 SHEET 4 AA3 4 SER A 182 THR A 186 -1 O TYR A 185 N TYR A 155 SHEET 1 AA4 3 THR C 51 MET C 52 0 SHEET 2 AA4 3 LYS C 207 ALA C 216 -1 O VAL C 214 N THR C 51 SHEET 3 AA4 3 ARG C 69 ASN C 73 -1 N LEU C 72 O MET C 208 SHEET 1 AA5 4 THR C 51 MET C 52 0 SHEET 2 AA5 4 LYS C 207 ALA C 216 -1 O VAL C 214 N THR C 51 SHEET 3 AA5 4 LEU C 114 PHE C 120 -1 N LYS C 115 O SER C 215 SHEET 4 AA5 4 SER C 163 VAL C 168 -1 O MET C 166 N PHE C 116 SHEET 1 AA6 4 LEU C 83 SER C 86 0 SHEET 2 AA6 4 TYR C 189 VAL C 199 -1 O ILE C 190 N PHE C 85 SHEET 3 AA6 4 THR C 127 ALA C 135 -1 N THR C 127 O VAL C 199 SHEET 4 AA6 4 THR C 152 ILE C 158 -1 O THR C 152 N TYR C 134 SHEET 1 AA7 3 ARG C 177 LEU C 178 0 SHEET 2 AA7 3 TYR C 107 ALA C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AA7 3 SER C 221 LEU C 225 -1 O ARG C 223 N HIS C 109 SHEET 1 AA8 2 MET B 14 LEU B 18 0 SHEET 2 AA8 2 SER B 21 THR B 25 -1 O ILE B 23 N LEU B 16 SHEET 1 AA9 5 VAL B 32 VAL B 33 0 SHEET 2 AA9 5 CYS B 204 LEU B 209 1 O VAL B 208 N VAL B 32 SHEET 3 AA9 5 HIS B 99 CYS B 112 -1 N TYR B 106 O LEU B 209 SHEET 4 AA9 5 ILE B 246 LEU B 262 -1 O THR B 251 N HIS B 109 SHEET 5 AA9 5 VAL B 69 TRP B 71 -1 N VAL B 69 O ILE B 248 SHEET 1 AB1 4 TYR B 64 THR B 65 0 SHEET 2 AB1 4 ILE B 246 LEU B 262 -1 O ILE B 252 N TYR B 64 SHEET 3 AB1 4 HIS B 99 CYS B 112 -1 N HIS B 109 O THR B 251 SHEET 4 AB1 4 ASP B 218 SER B 219 -1 O ASP B 218 N GLY B 102 SHEET 1 AB2 5 GLY B 154 GLU B 155 0 SHEET 2 AB2 5 TRP B 78 LEU B 82 -1 N TRP B 79 O GLY B 154 SHEET 3 AB2 5 TRP B 226 PHE B 238 -1 O TRP B 226 N LEU B 82 SHEET 4 AB2 5 HIS B 118 PRO B 128 -1 N GLN B 119 O ASP B 237 SHEET 5 AB2 5 HIS B 194 ASN B 198 -1 O GLN B 195 N VAL B 124 CISPEP 1 LEU B 82 PRO B 83 0 4.28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1849 TYR A 301 TER 3677 ALA C 235 TER 5652 GLN B 271 HETATM 5653 C1 SPH A 401 204.983 376.298 303.534 1.00 40.99 C HETATM 5654 O1 SPH A 401 204.230 377.481 303.379 1.00 40.99 O HETATM 5655 C2 SPH A 401 205.960 376.113 302.376 1.00 40.99 C HETATM 5656 N2 SPH A 401 207.228 375.649 302.907 1.00 40.99 N HETATM 5657 C3 SPH A 401 205.421 375.096 301.377 1.00 40.99 C HETATM 5658 O3 SPH A 401 204.095 375.408 301.021 1.00 40.99 O HETATM 5659 C4 SPH A 401 206.268 375.026 300.140 1.00 40.99 C HETATM 5660 C5 SPH A 401 205.867 375.743 298.922 1.00 40.99 C HETATM 5661 C6 SPH A 401 206.339 375.227 297.580 1.00 40.99 C HETATM 5662 C7 SPH A 401 207.656 375.876 297.166 1.00 40.99 C HETATM 5663 C8 SPH A 401 207.424 377.236 296.514 1.00 40.99 C HETATM 5664 C9 SPH A 401 208.534 377.585 295.529 1.00 40.99 C HETATM 5665 C10 SPH A 401 208.191 378.856 294.760 1.00 40.99 C HETATM 5666 C11 SPH A 401 209.008 378.980 293.478 1.00 40.99 C HETATM 5667 C12 SPH A 401 208.451 380.089 292.589 1.00 40.99 C HETATM 5668 C13 SPH A 401 209.015 380.019 291.174 1.00 40.99 C HETATM 5669 C14 SPH A 401 208.053 380.653 290.176 1.00 40.99 C HETATM 5670 C15 SPH A 401 208.786 381.134 288.929 1.00 40.99 C HETATM 5671 C16 SPH A 401 207.949 382.137 288.143 1.00 40.99 C HETATM 5672 C17 SPH A 401 208.644 382.520 286.841 1.00 40.99 C HETATM 5673 C18 SPH A 401 207.985 383.734 286.201 1.00 40.99 C CONECT 5653 5654 5655 CONECT 5654 5653 CONECT 5655 5653 5656 5657 CONECT 5656 5655 CONECT 5657 5655 5658 5659 CONECT 5658 5657 CONECT 5659 5657 5660 CONECT 5660 5659 5661 CONECT 5661 5660 5662 CONECT 5662 5661 5663 CONECT 5663 5662 5664 CONECT 5664 5663 5665 CONECT 5665 5664 5666 CONECT 5666 5665 5667 CONECT 5667 5666 5668 CONECT 5668 5667 5669 CONECT 5669 5668 5670 CONECT 5670 5669 5671 CONECT 5671 5670 5672 CONECT 5672 5671 5673 CONECT 5673 5672 MASTER 411 0 1 15 42 0 0 6 5670 3 21 64 END