HEADER IMMUNE SYSTEM 30-APR-24 8ZCM TITLE CRYOGENIC TEMPERATURE CRYSTAL STRUCTURE OF FC FRAGMENT OF HUMAN IGG1 TITLE 2 FROM BIOSIMILAR VEGF-TRAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FC FRAGMENT; COMPND 5 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS FUSION PROTEIN, IMMUNOGLOBIN, N-GLYCANS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.DESTAN,H.DEMIRCI REVDAT 2 13-NOV-24 8ZCM 1 REMARK REVDAT 1 08-MAY-24 8ZCM 0 JRNL AUTH E.DESTAN,H.DEMIRCI JRNL TITL CRYOGENIC TEMPERATURE CRYSTAL STRUCTURE OF FC FRAGMENT OF JRNL TITL 2 HUMAN IGG1 FROM BIOSIMILAR VEGF-TRAP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 14531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.360 REMARK 3 R VALUE (WORKING SET) : 0.354 REMARK 3 FREE R VALUE : 0.409 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0100 - 5.6900 0.92 1358 152 0.2942 0.3419 REMARK 3 2 5.6800 - 4.5100 0.96 1320 147 0.3179 0.3616 REMARK 3 3 4.5100 - 3.9400 0.96 1330 147 0.3551 0.3762 REMARK 3 4 3.9400 - 3.5800 0.97 1322 148 0.3714 0.4918 REMARK 3 5 3.5800 - 3.3300 0.96 1295 144 0.4014 0.5129 REMARK 3 6 3.3300 - 3.1300 0.94 1264 139 0.4342 0.5030 REMARK 3 7 3.1300 - 2.9700 0.96 1315 146 0.4208 0.4228 REMARK 3 8 2.9700 - 2.8400 0.96 1270 142 0.3978 0.4136 REMARK 3 9 2.8400 - 2.7300 0.97 1300 144 0.3736 0.4349 REMARK 3 10 2.7300 - 2.6400 0.98 1303 145 0.3655 0.3978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.730 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 49.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3624 REMARK 3 ANGLE : 0.547 4940 REMARK 3 CHIRALITY : 0.046 595 REMARK 3 PLANARITY : 0.004 608 REMARK 3 DIHEDRAL : 12.543 1409 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8984 12.3734 2.5276 REMARK 3 T TENSOR REMARK 3 T11: 2.1495 T22: 1.9084 REMARK 3 T33: 1.4885 T12: -0.4971 REMARK 3 T13: 1.1322 T23: 0.5162 REMARK 3 L TENSOR REMARK 3 L11: 1.2689 L22: 0.3816 REMARK 3 L33: 1.3715 L12: -0.1477 REMARK 3 L13: 0.7964 L23: -0.3781 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 1.6656 S13: 0.2710 REMARK 3 S21: -0.8447 S22: 0.4136 S23: -0.4932 REMARK 3 S31: -0.0366 S32: 0.3029 S33: 0.5771 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0563 10.4483 34.2809 REMARK 3 T TENSOR REMARK 3 T11: 0.6260 T22: 0.5847 REMARK 3 T33: 0.3006 T12: 0.1566 REMARK 3 T13: 0.2534 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 1.6417 L22: 2.5861 REMARK 3 L33: 2.1250 L12: -0.2141 REMARK 3 L13: 0.3217 L23: 0.0406 REMARK 3 S TENSOR REMARK 3 S11: -0.6168 S12: -0.3702 S13: -0.1565 REMARK 3 S21: 1.0131 S22: 0.2028 S23: 0.2542 REMARK 3 S31: 0.2641 S32: -0.0822 S33: 0.1372 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1184 -12.6814 19.0485 REMARK 3 T TENSOR REMARK 3 T11: 0.4197 T22: 0.4339 REMARK 3 T33: 0.6791 T12: 0.1950 REMARK 3 T13: 0.3357 T23: 0.1972 REMARK 3 L TENSOR REMARK 3 L11: 1.7895 L22: 2.5016 REMARK 3 L33: 2.7506 L12: -0.1872 REMARK 3 L13: -0.7845 L23: 0.9001 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.2728 S13: -0.0986 REMARK 3 S21: -0.0110 S22: -0.3444 S23: 0.2392 REMARK 3 S31: -0.2868 S32: -0.0117 S33: -0.3173 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 250 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3516 -15.4755 1.4477 REMARK 3 T TENSOR REMARK 3 T11: 0.4363 T22: 1.4523 REMARK 3 T33: 0.5936 T12: -0.0851 REMARK 3 T13: 0.1855 T23: 0.6036 REMARK 3 L TENSOR REMARK 3 L11: 1.1521 L22: 0.4490 REMARK 3 L33: 0.3820 L12: 0.2497 REMARK 3 L13: 0.0390 L23: -0.2332 REMARK 3 S TENSOR REMARK 3 S11: -0.4083 S12: 0.4576 S13: -0.2800 REMARK 3 S21: -0.2491 S22: 0.1797 S23: -0.0930 REMARK 3 S31: 0.2509 S32: 0.0400 S33: 0.1194 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4061 -18.7364 6.5639 REMARK 3 T TENSOR REMARK 3 T11: 1.0776 T22: 0.6186 REMARK 3 T33: 0.7519 T12: 0.2689 REMARK 3 T13: -0.1916 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 3.9478 L22: 6.4139 REMARK 3 L33: 4.5417 L12: 1.8896 REMARK 3 L13: 2.7077 L23: 1.6987 REMARK 3 S TENSOR REMARK 3 S11: -0.2989 S12: 0.4130 S13: 0.8204 REMARK 3 S21: -0.4103 S22: -0.5958 S23: 1.2600 REMARK 3 S31: 0.2239 S32: 0.0373 S33: 0.7467 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0001 -10.0125 12.3924 REMARK 3 T TENSOR REMARK 3 T11: 0.3510 T22: 0.2886 REMARK 3 T33: 0.2937 T12: -0.3773 REMARK 3 T13: -0.0462 T23: 0.2908 REMARK 3 L TENSOR REMARK 3 L11: 0.8297 L22: 1.3464 REMARK 3 L33: 0.8224 L12: 0.1158 REMARK 3 L13: 0.3609 L23: -0.2486 REMARK 3 S TENSOR REMARK 3 S11: -0.4181 S12: 0.3389 S13: 0.5638 REMARK 3 S21: -0.7645 S22: -0.1395 S23: 0.0309 REMARK 3 S31: -0.0691 S32: 0.4891 S33: 0.1028 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 322 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6849 1.1079 38.2395 REMARK 3 T TENSOR REMARK 3 T11: 1.2761 T22: 0.5853 REMARK 3 T33: 0.5585 T12: 0.2475 REMARK 3 T13: 0.0507 T23: -0.1149 REMARK 3 L TENSOR REMARK 3 L11: 0.8599 L22: 2.3837 REMARK 3 L33: 1.6313 L12: 0.2236 REMARK 3 L13: 1.1601 L23: -0.0926 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: 0.2163 S13: 0.5308 REMARK 3 S21: 0.0554 S22: -0.6263 S23: 0.0690 REMARK 3 S31: 0.2714 S32: -0.3536 S33: 0.2929 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 358 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5556 -4.5251 36.0459 REMARK 3 T TENSOR REMARK 3 T11: 0.7107 T22: 0.5012 REMARK 3 T33: 0.2689 T12: 0.1930 REMARK 3 T13: -0.0451 T23: -0.1598 REMARK 3 L TENSOR REMARK 3 L11: 1.0644 L22: 1.8056 REMARK 3 L33: 1.3502 L12: 0.1297 REMARK 3 L13: 0.5794 L23: 0.4682 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.1128 S13: -0.1698 REMARK 3 S21: 0.4491 S22: -0.1741 S23: 0.1434 REMARK 3 S31: 0.0810 S32: -0.2672 S33: -0.0153 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 404 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3947 -9.3634 44.3015 REMARK 3 T TENSOR REMARK 3 T11: 0.9502 T22: 0.8805 REMARK 3 T33: 0.4382 T12: 0.4192 REMARK 3 T13: 0.0131 T23: -0.2238 REMARK 3 L TENSOR REMARK 3 L11: 1.2959 L22: 5.1212 REMARK 3 L33: 2.5262 L12: -2.1000 REMARK 3 L13: 0.4045 L23: -2.1233 REMARK 3 S TENSOR REMARK 3 S11: -0.1786 S12: -0.4461 S13: -0.1509 REMARK 3 S21: 1.1219 S22: 1.0132 S23: 0.5740 REMARK 3 S31: -0.5945 S32: -0.2780 S33: 0.2087 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 414 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0111 -6.2021 41.8354 REMARK 3 T TENSOR REMARK 3 T11: 1.3850 T22: 0.8014 REMARK 3 T33: 0.4406 T12: 0.1486 REMARK 3 T13: -0.3286 T23: 0.2761 REMARK 3 L TENSOR REMARK 3 L11: 0.1464 L22: 0.8614 REMARK 3 L33: 2.3727 L12: 0.3525 REMARK 3 L13: -0.5559 L23: -1.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.1108 S12: -1.0153 S13: -0.5733 REMARK 3 S21: -0.1562 S22: 0.2152 S23: 0.1470 REMARK 3 S31: 0.2330 S32: 0.1093 S33: 0.0653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300047383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 46.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.850 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 465 SER A 429 REMARK 465 SER B 429 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 409 CA CB OG REMARK 480 SER A 425 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 282 OG1 THR A 284 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 359 -168.78 -75.12 REMARK 500 ASN A 375 43.96 -142.44 REMARK 500 PRO B 359 -164.65 -77.12 REMARK 500 ASN B 419 10.48 59.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 612 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 7.27 ANGSTROMS DBREF 8ZCM A 222 429 UNP P0DOX5 IGG1_HUMAN 239 446 DBREF 8ZCM B 222 429 UNP P0DOX5 IGG1_HUMAN 239 446 SEQRES 1 A 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 A 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 A 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 A 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 A 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 A 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 A 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 A 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 A 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 A 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 A 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 A 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 B 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 B 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 B 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 B 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 B 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 B 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 B 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 B 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 B 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 B 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 B 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 B 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 B 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 B 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 B 208 LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET FUL C 9 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET FUC D 7 10 HET GOL B 501 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUL C6 H12 O5 FORMUL 4 FUC C6 H12 O5 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *29(H2 O) HELIX 1 AA1 LYS A 231 LEU A 236 1 6 HELIX 2 AA2 LEU A 294 ASN A 300 1 7 HELIX 3 AA3 ARG A 340 LYS A 345 5 6 HELIX 4 AA4 LYS A 399 GLN A 404 1 6 HELIX 5 AA5 LEU A 417 TYR A 421 5 5 HELIX 6 AA6 LYS B 231 MET B 237 1 7 HELIX 7 AA7 LEU B 294 ASN B 300 1 7 HELIX 8 AA8 ASP B 341 LYS B 345 5 5 HELIX 9 AA9 LYS B 399 GLN B 404 1 6 HELIX 10 AB1 LEU B 417 TYR B 421 5 5 SHEET 1 AA1 4 SER A 224 PHE A 228 0 SHEET 2 AA1 4 GLU A 243 VAL A 251 -1 O VAL A 247 N PHE A 226 SHEET 3 AA1 4 TYR A 285 THR A 292 -1 O LEU A 291 N VAL A 244 SHEET 4 AA1 4 LYS A 273 THR A 274 -1 N LYS A 273 O VAL A 290 SHEET 1 AA2 4 VAL A 267 VAL A 269 0 SHEET 2 AA2 4 VAL A 258 VAL A 264 -1 N VAL A 264 O VAL A 267 SHEET 3 AA2 4 TYR A 304 ASN A 310 -1 O LYS A 307 N ASN A 261 SHEET 4 AA2 4 ILE A 317 ILE A 321 -1 O LYS A 319 N CYS A 306 SHEET 1 AA3 4 GLN A 332 LEU A 336 0 SHEET 2 AA3 4 GLN A 347 PHE A 357 -1 O LEU A 353 N TYR A 334 SHEET 3 AA3 4 PHE A 389 ASP A 398 -1 O LEU A 395 N LEU A 350 SHEET 4 AA3 4 TYR A 376 THR A 378 -1 N LYS A 377 O LYS A 394 SHEET 1 AA4 4 GLN A 332 LEU A 336 0 SHEET 2 AA4 4 GLN A 347 PHE A 357 -1 O LEU A 353 N TYR A 334 SHEET 3 AA4 4 PHE A 389 ASP A 398 -1 O LEU A 395 N LEU A 350 SHEET 4 AA4 4 VAL A 382 LEU A 383 -1 N VAL A 382 O PHE A 390 SHEET 1 AA5 4 GLN A 371 PRO A 372 0 SHEET 2 AA5 4 ALA A 363 SER A 368 -1 N SER A 368 O GLN A 371 SHEET 3 AA5 4 PHE A 408 MET A 413 -1 O SER A 411 N GLU A 365 SHEET 4 AA5 4 THR A 422 LEU A 426 -1 O LEU A 426 N PHE A 408 SHEET 1 AA6 4 SER B 224 PHE B 228 0 SHEET 2 AA6 4 GLU B 243 VAL B 251 -1 O VAL B 247 N PHE B 226 SHEET 3 AA6 4 TYR B 285 THR B 292 -1 O VAL B 287 N VAL B 248 SHEET 4 AA6 4 LYS B 273 THR B 274 -1 N LYS B 273 O VAL B 290 SHEET 1 AA7 4 SER B 224 PHE B 228 0 SHEET 2 AA7 4 GLU B 243 VAL B 251 -1 O VAL B 247 N PHE B 226 SHEET 3 AA7 4 TYR B 285 THR B 292 -1 O VAL B 287 N VAL B 248 SHEET 4 AA7 4 GLU B 278 GLU B 279 -1 N GLU B 278 O ARG B 286 SHEET 1 AA8 4 VAL B 267 VAL B 269 0 SHEET 2 AA8 4 VAL B 258 VAL B 264 -1 N VAL B 264 O VAL B 267 SHEET 3 AA8 4 TYR B 304 ASN B 310 -1 O LYS B 307 N ASN B 261 SHEET 4 AA8 4 ILE B 317 ILE B 321 -1 O LYS B 319 N CYS B 306 SHEET 1 AA9 4 GLN B 332 LEU B 336 0 SHEET 2 AA9 4 GLN B 347 PHE B 357 -1 O LEU B 353 N TYR B 334 SHEET 3 AA9 4 PHE B 389 ASP B 398 -1 O PHE B 389 N PHE B 357 SHEET 4 AA9 4 TYR B 376 THR B 378 -1 N LYS B 377 O LYS B 394 SHEET 1 AB1 4 GLN B 332 LEU B 336 0 SHEET 2 AB1 4 GLN B 347 PHE B 357 -1 O LEU B 353 N TYR B 334 SHEET 3 AB1 4 PHE B 389 ASP B 398 -1 O PHE B 389 N PHE B 357 SHEET 4 AB1 4 VAL B 382 LEU B 383 -1 N VAL B 382 O PHE B 390 SHEET 1 AB2 4 GLN B 371 PRO B 372 0 SHEET 2 AB2 4 ALA B 363 SER B 368 -1 N SER B 368 O GLN B 371 SHEET 3 AB2 4 PHE B 408 MET B 413 -1 O SER B 409 N GLU B 367 SHEET 4 AB2 4 THR B 422 LEU B 426 -1 O LEU B 426 N PHE B 408 SSBOND 1 CYS A 246 CYS A 306 1555 1555 2.03 SSBOND 2 CYS A 352 CYS A 410 1555 1555 2.03 SSBOND 3 CYS B 246 CYS B 306 1555 1555 2.03 SSBOND 4 CYS B 352 CYS B 410 1555 1555 2.03 LINK ND2 ASN A 282 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 282 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUL C 9 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.45 LINK O3 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.44 LINK O2 MAN C 7 C1 NAG C 8 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 7 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 6 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 CISPEP 1 TYR A 358 PRO A 359 0 -2.49 CISPEP 2 TYR B 358 PRO B 359 0 2.20 CRYST1 49.450 79.620 125.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007966 0.00000