data_8ZGB # _entry.id 8ZGB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZGB pdb_00008zgb 10.2210/pdb8zgb/pdb WWPDB D_1300045913 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-05-14 ? 2 'Structure model' 1 1 2025-09-03 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZGB _pdbx_database_status.recvd_initial_deposition_date 2024-05-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email hksong@korea.ac.kr _pdbx_contact_author.name_first 'Hyun Kyu' _pdbx_contact_author.name_last Song _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5684-4059 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, W.S.' 1 0000-0002-0022-0295 'Song, H.K.' 2 0000-0001-5684-4059 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 7817 _citation.page_last 7817 _citation.title 'Structural basis for the recognition and ubiquitylation of type-2 N-degron substrate by PRT1 plant N-recognin.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-63282-9 _citation.pdbx_database_id_PubMed 40841552 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, W.S.' 1 ? primary 'Kim, S.H.' 2 ? primary 'Kim, M.' 3 ? primary 'Shin, H.' 4 ? primary 'Lee, J.' 5 ? primary 'Sandmann, A.' 6 ? primary 'Park, O.K.' 7 ? primary 'Dissmeyer, N.' 8 ? primary 'Song, H.K.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'W-degron,E3 ubiquitin-protein ligase PRT1' 7747.663 2 2.3.2.27 ? ZZ-domain ? 2 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proteolysis 1 protein,RING-type E3 ubiquitin transferase PRT1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code WAAGGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDHRLELAR _entity_poly.pdbx_seq_one_letter_code_can WAAGGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDHRLELAR _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'SULFATE ION' SO4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 ALA n 1 3 ALA n 1 4 GLY n 1 5 GLY n 1 6 SER n 1 7 ASN n 1 8 VAL n 1 9 HIS n 1 10 PHE n 1 11 GLY n 1 12 ALA n 1 13 GLY n 1 14 CYS n 1 15 ASP n 1 16 SER n 1 17 CYS n 1 18 GLY n 1 19 VAL n 1 20 TYR n 1 21 PRO n 1 22 ILE n 1 23 ILE n 1 24 GLY n 1 25 ASP n 1 26 ARG n 1 27 TYR n 1 28 ARG n 1 29 CYS n 1 30 LYS n 1 31 ASP n 1 32 CYS n 1 33 LYS n 1 34 GLU n 1 35 GLU n 1 36 ILE n 1 37 GLY n 1 38 TYR n 1 39 ASP n 1 40 LEU n 1 41 CYS n 1 42 LYS n 1 43 ASP n 1 44 CYS n 1 45 TYR n 1 46 GLU n 1 47 THR n 1 48 PRO n 1 49 SER n 1 50 LYS n 1 51 VAL n 1 52 PRO n 1 53 GLY n 1 54 ARG n 1 55 PHE n 1 56 ASN n 1 57 GLN n 1 58 GLN n 1 59 HIS n 1 60 THR n 1 61 PRO n 1 62 ASP n 1 63 HIS n 1 64 ARG n 1 65 LEU n 1 66 GLU n 1 67 LEU n 1 68 ALA n 1 69 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 4 ? ? ? ? ? ? ? ? ? 'Arabidopsis thaliana' 3702 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 5 69 'thale cress' ? 'PRT1, At3g24800, K7P8.9' ? ? ? ? ? ? 'Arabidopsis thaliana' 3702 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 298 298 TRP TRP A . n A 1 2 ALA 2 299 299 ALA ALA A . n A 1 3 ALA 3 300 300 ALA ALA A . n A 1 4 GLY 4 301 301 GLY GLY A . n A 1 5 GLY 5 302 302 GLY GLY A . n A 1 6 SER 6 303 303 SER SER A . n A 1 7 ASN 7 304 304 ASN ASN A . n A 1 8 VAL 8 305 305 VAL VAL A . n A 1 9 HIS 9 306 306 HIS HIS A . n A 1 10 PHE 10 307 307 PHE PHE A . n A 1 11 GLY 11 308 308 GLY GLY A . n A 1 12 ALA 12 309 309 ALA ALA A . n A 1 13 GLY 13 310 310 GLY GLY A . n A 1 14 CYS 14 311 311 CYS CYS A . n A 1 15 ASP 15 312 312 ASP ASP A . n A 1 16 SER 16 313 313 SER SER A . n A 1 17 CYS 17 314 314 CYS CYS A . n A 1 18 GLY 18 315 315 GLY GLY A . n A 1 19 VAL 19 316 316 VAL VAL A . n A 1 20 TYR 20 317 317 TYR TYR A . n A 1 21 PRO 21 318 318 PRO PRO A . n A 1 22 ILE 22 319 319 ILE ILE A . n A 1 23 ILE 23 320 320 ILE ILE A . n A 1 24 GLY 24 321 321 GLY GLY A . n A 1 25 ASP 25 322 322 ASP ASP A . n A 1 26 ARG 26 323 323 ARG ARG A . n A 1 27 TYR 27 324 324 TYR TYR A . n A 1 28 ARG 28 325 325 ARG ARG A . n A 1 29 CYS 29 326 326 CYS CYS A . n A 1 30 LYS 30 327 327 LYS LYS A . n A 1 31 ASP 31 328 328 ASP ASP A . n A 1 32 CYS 32 329 329 CYS CYS A . n A 1 33 LYS 33 330 330 LYS LYS A . n A 1 34 GLU 34 331 331 GLU GLU A . n A 1 35 GLU 35 332 332 GLU GLU A . n A 1 36 ILE 36 333 333 ILE ILE A . n A 1 37 GLY 37 334 334 GLY GLY A . n A 1 38 TYR 38 335 335 TYR TYR A . n A 1 39 ASP 39 336 336 ASP ASP A . n A 1 40 LEU 40 337 337 LEU LEU A . n A 1 41 CYS 41 338 338 CYS CYS A . n A 1 42 LYS 42 339 339 LYS LYS A . n A 1 43 ASP 43 340 340 ASP ASP A . n A 1 44 CYS 44 341 341 CYS CYS A . n A 1 45 TYR 45 342 342 TYR TYR A . n A 1 46 GLU 46 343 343 GLU GLU A . n A 1 47 THR 47 344 344 THR THR A . n A 1 48 PRO 48 345 345 PRO PRO A . n A 1 49 SER 49 346 346 SER SER A . n A 1 50 LYS 50 347 347 LYS LYS A . n A 1 51 VAL 51 348 348 VAL VAL A . n A 1 52 PRO 52 349 349 PRO PRO A . n A 1 53 GLY 53 350 350 GLY GLY A . n A 1 54 ARG 54 351 351 ARG ARG A . n A 1 55 PHE 55 352 352 PHE PHE A . n A 1 56 ASN 56 353 353 ASN ASN A . n A 1 57 GLN 57 354 354 GLN GLN A . n A 1 58 GLN 58 355 355 GLN GLN A . n A 1 59 HIS 59 356 356 HIS HIS A . n A 1 60 THR 60 357 357 THR THR A . n A 1 61 PRO 61 358 358 PRO PRO A . n A 1 62 ASP 62 359 359 ASP ASP A . n A 1 63 HIS 63 360 360 HIS HIS A . n A 1 64 ARG 64 361 361 ARG ARG A . n A 1 65 LEU 65 362 362 LEU LEU A . n A 1 66 GLU 66 363 363 GLU GLU A . n A 1 67 LEU 67 364 364 LEU LEU A . n A 1 68 ALA 68 365 365 ALA ALA A . n A 1 69 ARG 69 366 ? ? ? A . n B 1 1 TRP 1 298 298 TRP TRP B . n B 1 2 ALA 2 299 299 ALA ALA B . n B 1 3 ALA 3 300 300 ALA ALA B . n B 1 4 GLY 4 301 301 GLY GLY B . n B 1 5 GLY 5 302 302 GLY GLY B . n B 1 6 SER 6 303 303 SER SER B . n B 1 7 ASN 7 304 304 ASN ASN B . n B 1 8 VAL 8 305 305 VAL VAL B . n B 1 9 HIS 9 306 306 HIS HIS B . n B 1 10 PHE 10 307 307 PHE PHE B . n B 1 11 GLY 11 308 308 GLY GLY B . n B 1 12 ALA 12 309 309 ALA ALA B . n B 1 13 GLY 13 310 310 GLY GLY B . n B 1 14 CYS 14 311 311 CYS CYS B . n B 1 15 ASP 15 312 312 ASP ASP B . n B 1 16 SER 16 313 313 SER SER B . n B 1 17 CYS 17 314 314 CYS CYS B . n B 1 18 GLY 18 315 315 GLY GLY B . n B 1 19 VAL 19 316 316 VAL VAL B . n B 1 20 TYR 20 317 317 TYR TYR B . n B 1 21 PRO 21 318 318 PRO PRO B . n B 1 22 ILE 22 319 319 ILE ILE B . n B 1 23 ILE 23 320 320 ILE ILE B . n B 1 24 GLY 24 321 321 GLY GLY B . n B 1 25 ASP 25 322 322 ASP ASP B . n B 1 26 ARG 26 323 323 ARG ARG B . n B 1 27 TYR 27 324 324 TYR TYR B . n B 1 28 ARG 28 325 325 ARG ARG B . n B 1 29 CYS 29 326 326 CYS CYS B . n B 1 30 LYS 30 327 327 LYS LYS B . n B 1 31 ASP 31 328 328 ASP ASP B . n B 1 32 CYS 32 329 329 CYS CYS B . n B 1 33 LYS 33 330 330 LYS ALA B . n B 1 34 GLU 34 331 331 GLU GLU B . n B 1 35 GLU 35 332 332 GLU GLU B . n B 1 36 ILE 36 333 333 ILE ILE B . n B 1 37 GLY 37 334 334 GLY GLY B . n B 1 38 TYR 38 335 335 TYR TYR B . n B 1 39 ASP 39 336 336 ASP ASP B . n B 1 40 LEU 40 337 337 LEU LEU B . n B 1 41 CYS 41 338 338 CYS CYS B . n B 1 42 LYS 42 339 339 LYS LYS B . n B 1 43 ASP 43 340 340 ASP ASP B . n B 1 44 CYS 44 341 341 CYS CYS B . n B 1 45 TYR 45 342 342 TYR TYR B . n B 1 46 GLU 46 343 343 GLU GLU B . n B 1 47 THR 47 344 344 THR THR B . n B 1 48 PRO 48 345 345 PRO PRO B . n B 1 49 SER 49 346 346 SER SER B . n B 1 50 LYS 50 347 347 LYS ALA B . n B 1 51 VAL 51 348 348 VAL VAL B . n B 1 52 PRO 52 349 349 PRO PRO B . n B 1 53 GLY 53 350 350 GLY GLY B . n B 1 54 ARG 54 351 351 ARG ARG B . n B 1 55 PHE 55 352 352 PHE PHE B . n B 1 56 ASN 56 353 353 ASN ASN B . n B 1 57 GLN 57 354 354 GLN GLN B . n B 1 58 GLN 58 355 355 GLN GLN B . n B 1 59 HIS 59 356 356 HIS HIS B . n B 1 60 THR 60 357 357 THR THR B . n B 1 61 PRO 61 358 358 PRO PRO B . n B 1 62 ASP 62 359 359 ASP ASP B . n B 1 63 HIS 63 360 360 HIS HIS B . n B 1 64 ARG 64 361 361 ARG ARG B . n B 1 65 LEU 65 362 362 LEU LEU B . n B 1 66 GLU 66 363 363 GLU GLU B . n B 1 67 LEU 67 364 364 LEU LEU B . n B 1 68 ALA 68 365 365 ALA ALA B . n B 1 69 ARG 69 366 ? ? ? B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 SO4 ? ? SO4 ? ? 'SUBJECT OF INVESTIGATION' ? 2 ZN ? ? ZN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 401 399 ZN ZN A . D 2 ZN 1 402 401 ZN ZN A . E 3 SO4 1 403 402 SO4 SO4 A . F 2 ZN 1 401 399 ZN ZN B . G 2 ZN 1 402 401 ZN ZN B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 330 ? CG ? B LYS 33 CG 2 1 Y 1 B LYS 330 ? CD ? B LYS 33 CD 3 1 Y 1 B LYS 330 ? CE ? B LYS 33 CE 4 1 Y 1 B LYS 330 ? NZ ? B LYS 33 NZ 5 1 Y 1 B LYS 347 ? CG ? B LYS 50 CG 6 1 Y 1 B LYS 347 ? CD ? B LYS 50 CD 7 1 Y 1 B LYS 347 ? CE ? B LYS 50 CE 8 1 Y 1 B LYS 347 ? NZ ? B LYS 50 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18rc7_3834 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8ZGB _cell.details ? _cell.formula_units_Z ? _cell.length_a 106.260 _cell.length_a_esd ? _cell.length_b 106.260 _cell.length_b_esd ? _cell.length_c 97.063 _cell.length_c_esd ? _cell.volume 1095956.542 _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ZGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZGB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 72.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;PEG 400 Tris base/ Hydrochloric acid pH 8.5 Lithium sulfate ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-01-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.28 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate 129.65 _reflns.entry_id 8ZGB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.785 _reflns.d_resolution_low 40.77 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7204 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.56 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 28.8 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.48 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.1287 _reflns.pdbx_Rpim_I_all 0.02445 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.1262 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.785 _reflns_shell.d_res_low 2.884 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.02 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 683 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.131 _reflns_shell.pdbx_Rpim_I_all 0.3918 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.643 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.093 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 143.49 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ZGB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.785 _refine.ls_d_res_low 40.77 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7204 _refine.ls_number_reflns_R_free 1325 _refine.ls_number_reflns_R_work 11923 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2373 _refine.ls_R_factor_R_free 0.2613 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2345 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8ZG8 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.6713 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4761 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.785 _refine_hist.d_res_low 40.77 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1059 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1050 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0077 ? 1082 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9448 ? 1464 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0553 ? 142 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0064 ? 198 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 23.9525 ? 390 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 3.44159167577 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id A _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.785 2.90 . . 142 1278 96.27 . . . . 0.4638 . . . . . . . . . . . 0.4667 'X-RAY DIFFRACTION' 2.90 3.03 . . 146 1323 100.00 . . . . 0.3967 . . . . . . . . . . . 0.3475 'X-RAY DIFFRACTION' 3.03 3.19 . . 148 1333 100.00 . . . . 0.3320 . . . . . . . . . . . 0.3518 'X-RAY DIFFRACTION' 3.19 3.39 . . 148 1315 100.00 . . . . 0.3394 . . . . . . . . . . . 0.3013 'X-RAY DIFFRACTION' 3.39 3.65 . . 150 1347 100.00 . . . . 0.2929 . . . . . . . . . . . 0.3640 'X-RAY DIFFRACTION' 3.65 4.02 . . 146 1314 100.00 . . . . 0.2734 . . . . . . . . . . . 0.3159 'X-RAY DIFFRACTION' 4.02 4.60 . . 144 1346 100.00 . . . . 0.2190 . . . . . . . . . . . 0.2594 'X-RAY DIFFRACTION' 4.60 5.78 . . 147 1328 100.00 . . . . 0.2013 . . . . . . . . . . . 0.2121 'X-RAY DIFFRACTION' 5.79 40.77 . . 154 1339 99.87 . . . . 0.2052 . . . . . . . . . . . 0.2412 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] 0.125382589239 _struct_ncs_oper.matrix[1][2] 0.456889591042 _struct_ncs_oper.matrix[1][3] -0.880642440445 _struct_ncs_oper.matrix[2][1] 0.447875221916 _struct_ncs_oper.matrix[2][2] -0.818116809993 _struct_ncs_oper.matrix[2][3] -0.360683615931 _struct_ncs_oper.matrix[3][1] -0.885260973899 _struct_ncs_oper.matrix[3][2] -0.349194482781 _struct_ncs_oper.matrix[3][3] -0.307207130916 _struct_ncs_oper.vector[1] 26.8900655791 _struct_ncs_oper.vector[2] 68.7388382892 _struct_ncs_oper.vector[3] 70.6104951012 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 298 through 329 or resid 331 through 346 or resid 348 through 401)) ; ens_1 d_2 ;(chain "B" and (resid 298 through 329 or resid 331 through 346 or resid 348 through 401)) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A TRP 1 . A CYS 32 . A TRP 298 A CYS 329 ? ? ens_1 d_1 2 A GLU 34 . A SER 49 . A GLU 331 A SER 346 ? ? ens_1 d_1 3 A VAL 51 . A ALA 68 . A VAL 348 A ALA 365 ? ? ens_1 d_1 4 C ZN . . C ZN . . A ZN 401 A ZN 401 ? ? ens_1 d_2 1 B TRP 1 . B CYS 32 . B TRP 298 B CYS 329 ? ? ens_1 d_2 2 B GLU 34 . B SER 49 . B GLU 331 B SER 346 ? ? ens_1 d_2 3 B VAL 51 . B ALA 68 . B VAL 348 B ALA 365 ? ? ens_1 d_2 4 F ZN . . F ZN . . B ZN 401 B ZN 401 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 8ZGB _struct.title 'W-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase PRT1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZGB _struct_keywords.text 'complex, ZZ-domain, Arabidopsis thaliana, PRT1, E3-ubiquitin ligase, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8ZGB 8ZGB ? 1 ? 1 2 UNP PRT1_ARATH Q8LBL5 ? 1 GSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDHRLELAR 302 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ZGB A 1 ? 4 ? 8ZGB 298 ? 301 ? 298 301 2 2 8ZGB A 5 ? 69 ? Q8LBL5 302 ? 366 ? 302 366 3 1 8ZGB B 1 ? 4 ? 8ZGB 298 ? 301 ? 298 301 4 2 8ZGB B 5 ? 69 ? Q8LBL5 302 ? 366 ? 302 366 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 42 ? THR A 47 ? LYS A 339 THR A 344 1 ? 6 HELX_P HELX_P2 AA2 LYS B 42 ? THR B 47 ? LYS B 339 THR B 344 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 14 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 311 A ZN 402 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc2 metalc ? ? A CYS 17 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 314 A ZN 402 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc3 metalc ? ? A CYS 29 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 326 A ZN 401 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc4 metalc ? ? A CYS 32 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 329 A ZN 401 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc5 metalc ? ? A CYS 41 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 338 A ZN 402 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc6 metalc ? ? A CYS 44 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 341 A ZN 402 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc7 metalc ? ? A HIS 59 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 356 A ZN 401 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc8 metalc ? ? A HIS 63 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 360 A ZN 401 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc9 metalc ? ? B CYS 14 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 311 B ZN 402 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc10 metalc ? ? B CYS 17 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 314 B ZN 402 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc11 metalc ? ? B CYS 29 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 326 B ZN 401 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc12 metalc ? ? B CYS 32 SG ? ? ? 1_555 F ZN . ZN ? ? B CYS 329 B ZN 401 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc13 metalc ? ? B CYS 41 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 338 B ZN 402 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc14 metalc ? ? B CYS 44 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 341 B ZN 402 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc15 metalc ? ? B HIS 59 ND1 ? ? ? 1_555 F ZN . ZN ? ? B HIS 356 B ZN 401 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc16 metalc ? ? B HIS 63 ND1 ? ? ? 1_555 F ZN . ZN ? ? B HIS 360 B ZN 401 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 14 ? A CYS 311 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 SG ? A CYS 17 ? A CYS 314 ? 1_555 100.2 ? 2 SG ? A CYS 14 ? A CYS 311 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 SG ? A CYS 41 ? A CYS 338 ? 1_555 115.8 ? 3 SG ? A CYS 17 ? A CYS 314 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 SG ? A CYS 41 ? A CYS 338 ? 1_555 120.6 ? 4 SG ? A CYS 14 ? A CYS 311 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 SG ? A CYS 44 ? A CYS 341 ? 1_555 97.4 ? 5 SG ? A CYS 17 ? A CYS 314 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 SG ? A CYS 44 ? A CYS 341 ? 1_555 103.6 ? 6 SG ? A CYS 41 ? A CYS 338 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 SG ? A CYS 44 ? A CYS 341 ? 1_555 115.7 ? 7 SG ? A CYS 29 ? A CYS 326 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 32 ? A CYS 329 ? 1_555 120.8 ? 8 SG ? A CYS 29 ? A CYS 326 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 59 ? A HIS 356 ? 1_555 115.6 ? 9 SG ? A CYS 32 ? A CYS 329 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 59 ? A HIS 356 ? 1_555 106.8 ? 10 SG ? A CYS 29 ? A CYS 326 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 63 ? A HIS 360 ? 1_555 102.9 ? 11 SG ? A CYS 32 ? A CYS 329 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 63 ? A HIS 360 ? 1_555 96.6 ? 12 ND1 ? A HIS 59 ? A HIS 356 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 ND1 ? A HIS 63 ? A HIS 360 ? 1_555 112.3 ? 13 SG ? B CYS 14 ? B CYS 311 ? 1_555 ZN ? G ZN . ? B ZN 402 ? 1_555 SG ? B CYS 17 ? B CYS 314 ? 1_555 98.6 ? 14 SG ? B CYS 14 ? B CYS 311 ? 1_555 ZN ? G ZN . ? B ZN 402 ? 1_555 SG ? B CYS 41 ? B CYS 338 ? 1_555 119.0 ? 15 SG ? B CYS 17 ? B CYS 314 ? 1_555 ZN ? G ZN . ? B ZN 402 ? 1_555 SG ? B CYS 41 ? B CYS 338 ? 1_555 116.8 ? 16 SG ? B CYS 14 ? B CYS 311 ? 1_555 ZN ? G ZN . ? B ZN 402 ? 1_555 SG ? B CYS 44 ? B CYS 341 ? 1_555 104.4 ? 17 SG ? B CYS 17 ? B CYS 314 ? 1_555 ZN ? G ZN . ? B ZN 402 ? 1_555 SG ? B CYS 44 ? B CYS 341 ? 1_555 105.7 ? 18 SG ? B CYS 41 ? B CYS 338 ? 1_555 ZN ? G ZN . ? B ZN 402 ? 1_555 SG ? B CYS 44 ? B CYS 341 ? 1_555 110.7 ? 19 SG ? B CYS 29 ? B CYS 326 ? 1_555 ZN ? F ZN . ? B ZN 401 ? 1_555 SG ? B CYS 32 ? B CYS 329 ? 1_555 119.9 ? 20 SG ? B CYS 29 ? B CYS 326 ? 1_555 ZN ? F ZN . ? B ZN 401 ? 1_555 ND1 ? B HIS 59 ? B HIS 356 ? 1_555 113.6 ? 21 SG ? B CYS 32 ? B CYS 329 ? 1_555 ZN ? F ZN . ? B ZN 401 ? 1_555 ND1 ? B HIS 59 ? B HIS 356 ? 1_555 111.0 ? 22 SG ? B CYS 29 ? B CYS 326 ? 1_555 ZN ? F ZN . ? B ZN 401 ? 1_555 ND1 ? B HIS 63 ? B HIS 360 ? 1_555 106.4 ? 23 SG ? B CYS 32 ? B CYS 329 ? 1_555 ZN ? F ZN . ? B ZN 401 ? 1_555 ND1 ? B HIS 63 ? B HIS 360 ? 1_555 101.7 ? 24 ND1 ? B HIS 59 ? B HIS 356 ? 1_555 ZN ? F ZN . ? B ZN 401 ? 1_555 ND1 ? B HIS 63 ? B HIS 360 ? 1_555 101.5 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 20 A . ? TYR 317 A PRO 21 A ? PRO 318 A 1 -2.22 2 TYR 20 B . ? TYR 317 B PRO 21 B ? PRO 318 B 1 -2.70 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 8 ? HIS A 9 ? VAL A 305 HIS A 306 AA1 2 ILE A 22 ? ILE A 23 ? ILE A 319 ILE A 320 AA2 1 ASP A 39 ? CYS A 41 ? ASP A 336 CYS A 338 AA2 2 ARG A 26 ? CYS A 29 ? ARG A 323 CYS A 326 AA2 3 LEU A 65 ? LEU A 67 ? LEU A 362 LEU A 364 AA3 1 VAL B 8 ? HIS B 9 ? VAL B 305 HIS B 306 AA3 2 ILE B 22 ? ILE B 23 ? ILE B 319 ILE B 320 AA4 1 ASP B 39 ? CYS B 41 ? ASP B 336 CYS B 338 AA4 2 ARG B 26 ? CYS B 29 ? ARG B 323 CYS B 326 AA4 3 LEU B 65 ? LEU B 67 ? LEU B 362 LEU B 364 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 9 ? N HIS A 306 O ILE A 22 ? O ILE A 319 AA2 1 2 O LEU A 40 ? O LEU A 337 N TYR A 27 ? N TYR A 324 AA2 2 3 N ARG A 28 ? N ARG A 325 O GLU A 66 ? O GLU A 363 AA3 1 2 N HIS B 9 ? N HIS B 306 O ILE B 22 ? O ILE B 319 AA4 1 2 O LEU B 40 ? O LEU B 337 N TYR B 27 ? N TYR B 324 AA4 2 3 N ARG B 28 ? N ARG B 325 O GLU B 66 ? O GLU B 363 # _pdbx_entry_details.entry_id 8ZGB _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x,z+3/4 3 y+1/2,-x,z+3/4 4 x+1/2,-y,-z+3/4 5 -x+1/2,y,-z+3/4 6 -x,-y,z 7 y,x,-z 8 -y,-x,-z 9 x+1/2,y+1/2,z+1/2 10 -y+1,x+1/2,z+5/4 11 y+1,-x+1/2,z+5/4 12 x+1,-y+1/2,-z+5/4 13 -x+1,y+1/2,-z+5/4 14 -x+1/2,-y+1/2,z+1/2 15 y+1/2,x+1/2,-z+1/2 16 -y+1/2,-x+1/2,-z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 50.8858647127 42.6784911743 9.54600703396 1.34970636453 ? -0.202841465939 ? -0.107195357797 ? 0.911263723576 ? 0.0171821139646 ? 1.01460156279 ? 6.58487757053 ? -0.350559295095 ? 2.61238471979 ? 4.62911532007 ? -1.71791969551 ? 9.32212828348 ? -0.270644650243 ? 1.48772322974 ? -0.529690140646 ? -0.224506669596 ? 0.0893546950749 ? 0.673204229873 ? 0.0400256236838 ? 1.31968168765 ? 0.256429635408 ? 2 'X-RAY DIFFRACTION' ? refined 47.7091673585 42.4676904845 19.544111946 1.23302463016 ? 0.0218176522046 ? 0.0487695256914 ? 1.08173903661 ? 0.130708309519 ? 1.2378875109 ? 3.668596253 ? 2.03081334688 ? -2.56900173671 ? 5.53570150052 ? 3.40248472383 ? 6.64852176145 ? -0.00821876908966 ? 0.4245339543 ? 0.205259836685 ? -0.456456059468 ? 0.246731512622 ? 0.612241200551 ? 0.464268411727 ? -1.45674808166 ? 0.342593656493 ? 3 'X-RAY DIFFRACTION' ? refined 52.6127348774 33.8115383377 17.81289474 1.79491929441 ? 0.206717222245 ? 0.233912008607 ? 1.12895433023 ? 0.349359439807 ? 1.12516821393 ? 2.89783333107 ? -1.97184392287 ? 0.562305744571 ? 9.08746189722 ? 0.777349786887 ? 8.08044087356 ? 0.979838027619 ? -0.557068230884 ? -0.0251119398364 ? 0.403901231969 ? 0.0928527239141 ? -0.637921505042 ? 3.49788394645 ? -0.515140012089 ? 0.231990053889 ? 4 'X-RAY DIFFRACTION' ? refined 51.8014167291 39.9058990804 25.774258455 1.49005404942 ? -0.199450905426 ? -0.132489007259 ? 1.34402358501 ? 0.0593733909119 ? 1.20530587153 ? 8.64027033136 ? 1.21554624114 ? 1.96337970825 ? 2.01788009228 ? 3.48889731986 ? 6.91216988055 ? -0.893451840876 ? -1.560916413 ? -0.152197606488 ? 1.26488992548 ? 0.218767762235 ? 0.52619240502 ? 0.189928049092 ? -0.420516793141 ? 0.212842651814 ? 5 'X-RAY DIFFRACTION' ? refined 44.8315963143 52.9378409358 8.02336268757 0.967384828576 ? -0.0134723681642 ? -0.154067790256 ? 1.03986727545 ? 0.137053421694 ? 1.11053568207 ? 1.15090248097 ? 0.498066266699 ? 2.13213109331 ? 0.624953392625 ? 2.58344345707 ? 5.05754935776 ? -0.421592745001 ? -1.46975531137 ? 0.280435194467 ? 0.150871838863 ? 0.393465518359 ? -0.193870029785 ? -0.24684304665 ? -1.73094461717 ? -0.442147962095 ? 6 'X-RAY DIFFRACTION' ? refined 35.1584496587 51.2429292713 7.44059674118 0.887390644456 ? -0.0827271124347 ? -0.0779575012615 ? 1.24041407544 ? 0.0946079045692 ? 0.924829616069 ? 9.33481322432 ? 3.9921214275 ? -1.3188247752 ? 4.00030953554 ? -0.292601230138 ? 7.15161770808 ? -0.0269618783907 ? -0.348580674355 ? -0.065648900984 ? 0.720507354492 ? -0.166039083654 ? -0.264216166131 ? -0.192811387701 ? -0.580434838651 ? 0.0453426253182 ? 7 'X-RAY DIFFRACTION' ? refined 28.5742092262 60.2526408362 -1.51582046889 2.09393091388 ? -0.223114114122 ? -0.590747313732 ? 1.91245137398 ? 0.302931641538 ? 2.0748431935 ? 7.25348747117 ? 1.11353809844 ? 2.30162020979 ? 7.86530950587 ? 6.4272809395 ? 5.53526101686 ? 2.03079984849 ? 2.20715353658 ? 3.00212356417 ? -2.69277699077 ? -4.49699328631 ? -5.78295999443 ? -1.66749450981 ? -2.02652380825 ? 1.26028350138 ? 8 'X-RAY DIFFRACTION' ? refined 28.1202930324 48.4548838016 3.44133052175 1.1298419049 ? -0.257351838701 ? -0.0925736794036 ? 1.773340115 ? 0.164005691016 ? 1.12854875274 ? 9.1094710048 ? -3.25569314771 ? 5.82067796373 ? 3.47890108708 ? 0.445820680214 ? 6.28451571674 ? -0.473993579949 ? 1.44681523918 ? 0.844149521763 ? -0.0411225972472 ? -0.12879242614 ? 2.29540406393 ? -1.05565518042 ? -2.33063283794 ? 0.599209437345 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 298 ? A 20 A 317 ? ? ;chain 'A' and (resid 298 through 317 ) ; 2 'X-RAY DIFFRACTION' 2 A 21 A 318 ? A 38 A 335 ? ? ;chain 'A' and (resid 318 through 335 ) ; 3 'X-RAY DIFFRACTION' 3 A 39 A 336 ? A 46 A 343 ? ? ;chain 'A' and (resid 336 through 343 ) ; 4 'X-RAY DIFFRACTION' 4 A 47 A 344 ? A 68 A 365 ? ? ;chain 'A' and (resid 344 through 365 ) ; 5 'X-RAY DIFFRACTION' 5 D 1 B 298 ? D 20 B 317 ? ? ;chain 'B' and (resid 298 through 317 ) ; 6 'X-RAY DIFFRACTION' 6 D 21 B 318 ? D 46 B 343 ? ? ;chain 'B' and (resid 318 through 343 ) ; 7 'X-RAY DIFFRACTION' 7 D 47 B 344 ? D 51 B 348 ? ? ;chain 'B' and (resid 344 through 348 ) ; 8 'X-RAY DIFFRACTION' 8 D 52 B 349 ? D 68 B 365 ? ? ;chain 'B' and (resid 349 through 365 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 366 ? A ARG 69 2 1 Y 1 B ARG 366 ? B ARG 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 PHE N N N N 227 PHE CA C N S 228 PHE C C N N 229 PHE O O N N 230 PHE CB C N N 231 PHE CG C Y N 232 PHE CD1 C Y N 233 PHE CD2 C Y N 234 PHE CE1 C Y N 235 PHE CE2 C Y N 236 PHE CZ C Y N 237 PHE OXT O N N 238 PHE H H N N 239 PHE H2 H N N 240 PHE HA H N N 241 PHE HB2 H N N 242 PHE HB3 H N N 243 PHE HD1 H N N 244 PHE HD2 H N N 245 PHE HE1 H N N 246 PHE HE2 H N N 247 PHE HZ H N N 248 PHE HXT H N N 249 PRO N N N N 250 PRO CA C N S 251 PRO C C N N 252 PRO O O N N 253 PRO CB C N N 254 PRO CG C N N 255 PRO CD C N N 256 PRO OXT O N N 257 PRO H H N N 258 PRO HA H N N 259 PRO HB2 H N N 260 PRO HB3 H N N 261 PRO HG2 H N N 262 PRO HG3 H N N 263 PRO HD2 H N N 264 PRO HD3 H N N 265 PRO HXT H N N 266 SER N N N N 267 SER CA C N S 268 SER C C N N 269 SER O O N N 270 SER CB C N N 271 SER OG O N N 272 SER OXT O N N 273 SER H H N N 274 SER H2 H N N 275 SER HA H N N 276 SER HB2 H N N 277 SER HB3 H N N 278 SER HG H N N 279 SER HXT H N N 280 SO4 S S N N 281 SO4 O1 O N N 282 SO4 O2 O N N 283 SO4 O3 O N N 284 SO4 O4 O N N 285 THR N N N N 286 THR CA C N S 287 THR C C N N 288 THR O O N N 289 THR CB C N R 290 THR OG1 O N N 291 THR CG2 C N N 292 THR OXT O N N 293 THR H H N N 294 THR H2 H N N 295 THR HA H N N 296 THR HB H N N 297 THR HG1 H N N 298 THR HG21 H N N 299 THR HG22 H N N 300 THR HG23 H N N 301 THR HXT H N N 302 TRP N N N N 303 TRP CA C N S 304 TRP C C N N 305 TRP O O N N 306 TRP CB C N N 307 TRP CG C Y N 308 TRP CD1 C Y N 309 TRP CD2 C Y N 310 TRP NE1 N Y N 311 TRP CE2 C Y N 312 TRP CE3 C Y N 313 TRP CZ2 C Y N 314 TRP CZ3 C Y N 315 TRP CH2 C Y N 316 TRP OXT O N N 317 TRP H H N N 318 TRP H2 H N N 319 TRP HA H N N 320 TRP HB2 H N N 321 TRP HB3 H N N 322 TRP HD1 H N N 323 TRP HE1 H N N 324 TRP HE3 H N N 325 TRP HZ2 H N N 326 TRP HZ3 H N N 327 TRP HH2 H N N 328 TRP HXT H N N 329 TYR N N N N 330 TYR CA C N S 331 TYR C C N N 332 TYR O O N N 333 TYR CB C N N 334 TYR CG C Y N 335 TYR CD1 C Y N 336 TYR CD2 C Y N 337 TYR CE1 C Y N 338 TYR CE2 C Y N 339 TYR CZ C Y N 340 TYR OH O N N 341 TYR OXT O N N 342 TYR H H N N 343 TYR H2 H N N 344 TYR HA H N N 345 TYR HB2 H N N 346 TYR HB3 H N N 347 TYR HD1 H N N 348 TYR HD2 H N N 349 TYR HE1 H N N 350 TYR HE2 H N N 351 TYR HH H N N 352 TYR HXT H N N 353 VAL N N N N 354 VAL CA C N S 355 VAL C C N N 356 VAL O O N N 357 VAL CB C N N 358 VAL CG1 C N N 359 VAL CG2 C N N 360 VAL OXT O N N 361 VAL H H N N 362 VAL H2 H N N 363 VAL HA H N N 364 VAL HB H N N 365 VAL HG11 H N N 366 VAL HG12 H N N 367 VAL HG13 H N N 368 VAL HG21 H N N 369 VAL HG22 H N N 370 VAL HG23 H N N 371 VAL HXT H N N 372 ZN ZN ZN N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 PHE N CA sing N N 216 PHE N H sing N N 217 PHE N H2 sing N N 218 PHE CA C sing N N 219 PHE CA CB sing N N 220 PHE CA HA sing N N 221 PHE C O doub N N 222 PHE C OXT sing N N 223 PHE CB CG sing N N 224 PHE CB HB2 sing N N 225 PHE CB HB3 sing N N 226 PHE CG CD1 doub Y N 227 PHE CG CD2 sing Y N 228 PHE CD1 CE1 sing Y N 229 PHE CD1 HD1 sing N N 230 PHE CD2 CE2 doub Y N 231 PHE CD2 HD2 sing N N 232 PHE CE1 CZ doub Y N 233 PHE CE1 HE1 sing N N 234 PHE CE2 CZ sing Y N 235 PHE CE2 HE2 sing N N 236 PHE CZ HZ sing N N 237 PHE OXT HXT sing N N 238 PRO N CA sing N N 239 PRO N CD sing N N 240 PRO N H sing N N 241 PRO CA C sing N N 242 PRO CA CB sing N N 243 PRO CA HA sing N N 244 PRO C O doub N N 245 PRO C OXT sing N N 246 PRO CB CG sing N N 247 PRO CB HB2 sing N N 248 PRO CB HB3 sing N N 249 PRO CG CD sing N N 250 PRO CG HG2 sing N N 251 PRO CG HG3 sing N N 252 PRO CD HD2 sing N N 253 PRO CD HD3 sing N N 254 PRO OXT HXT sing N N 255 SER N CA sing N N 256 SER N H sing N N 257 SER N H2 sing N N 258 SER CA C sing N N 259 SER CA CB sing N N 260 SER CA HA sing N N 261 SER C O doub N N 262 SER C OXT sing N N 263 SER CB OG sing N N 264 SER CB HB2 sing N N 265 SER CB HB3 sing N N 266 SER OG HG sing N N 267 SER OXT HXT sing N N 268 SO4 S O1 doub N N 269 SO4 S O2 doub N N 270 SO4 S O3 sing N N 271 SO4 S O4 sing N N 272 THR N CA sing N N 273 THR N H sing N N 274 THR N H2 sing N N 275 THR CA C sing N N 276 THR CA CB sing N N 277 THR CA HA sing N N 278 THR C O doub N N 279 THR C OXT sing N N 280 THR CB OG1 sing N N 281 THR CB CG2 sing N N 282 THR CB HB sing N N 283 THR OG1 HG1 sing N N 284 THR CG2 HG21 sing N N 285 THR CG2 HG22 sing N N 286 THR CG2 HG23 sing N N 287 THR OXT HXT sing N N 288 TRP N CA sing N N 289 TRP N H sing N N 290 TRP N H2 sing N N 291 TRP CA C sing N N 292 TRP CA CB sing N N 293 TRP CA HA sing N N 294 TRP C O doub N N 295 TRP C OXT sing N N 296 TRP CB CG sing N N 297 TRP CB HB2 sing N N 298 TRP CB HB3 sing N N 299 TRP CG CD1 doub Y N 300 TRP CG CD2 sing Y N 301 TRP CD1 NE1 sing Y N 302 TRP CD1 HD1 sing N N 303 TRP CD2 CE2 doub Y N 304 TRP CD2 CE3 sing Y N 305 TRP NE1 CE2 sing Y N 306 TRP NE1 HE1 sing N N 307 TRP CE2 CZ2 sing Y N 308 TRP CE3 CZ3 doub Y N 309 TRP CE3 HE3 sing N N 310 TRP CZ2 CH2 doub Y N 311 TRP CZ2 HZ2 sing N N 312 TRP CZ3 CH2 sing Y N 313 TRP CZ3 HZ3 sing N N 314 TRP CH2 HH2 sing N N 315 TRP OXT HXT sing N N 316 TYR N CA sing N N 317 TYR N H sing N N 318 TYR N H2 sing N N 319 TYR CA C sing N N 320 TYR CA CB sing N N 321 TYR CA HA sing N N 322 TYR C O doub N N 323 TYR C OXT sing N N 324 TYR CB CG sing N N 325 TYR CB HB2 sing N N 326 TYR CB HB3 sing N N 327 TYR CG CD1 doub Y N 328 TYR CG CD2 sing Y N 329 TYR CD1 CE1 sing Y N 330 TYR CD1 HD1 sing N N 331 TYR CD2 CE2 doub Y N 332 TYR CD2 HD2 sing N N 333 TYR CE1 CZ doub Y N 334 TYR CE1 HE1 sing N N 335 TYR CE2 CZ sing Y N 336 TYR CE2 HE2 sing N N 337 TYR CZ OH sing N N 338 TYR OH HH sing N N 339 TYR OXT HXT sing N N 340 VAL N CA sing N N 341 VAL N H sing N N 342 VAL N H2 sing N N 343 VAL CA C sing N N 344 VAL CA CB sing N N 345 VAL CA HA sing N N 346 VAL C O doub N N 347 VAL C OXT sing N N 348 VAL CB CG1 sing N N 349 VAL CB CG2 sing N N 350 VAL CB HB sing N N 351 VAL CG1 HG11 sing N N 352 VAL CG1 HG12 sing N N 353 VAL CG1 HG13 sing N N 354 VAL CG2 HG21 sing N N 355 VAL CG2 HG22 sing N N 356 VAL CG2 HG23 sing N N 357 VAL OXT HXT sing N N 358 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Research Foundation (NRF, Korea)' 'Korea, Republic Of' 2020R1A2C3008285 1 'National Research Foundation (NRF, Korea)' 'Korea, Republic Of' 2021M3A9I4030068 2 'National Research Foundation (NRF, Korea)' 'Korea, Republic Of' 2022M3A9G8082638 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8ZG8 _pdbx_initial_refinement_model.details 'Apo form ZZ-domain' # _space_group.name_H-M_alt 'I 41 2 2' _space_group.name_Hall 'I 4bw 2bw' _space_group.IT_number 98 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 8ZGB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.009411 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009411 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010303 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.99627 ? ? ? 14.84254 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? ZN ? ? 29.81721 ? ? ? 5.87945 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #