data_8ZND # _entry.id 8ZND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZND pdb_00008znd 10.2210/pdb8znd/pdb WWPDB D_1300046500 ? ? EMDB EMD-60268 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZND _pdbx_database_status.recvd_initial_deposition_date 2024-05-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'The crystal structure of the same protein in unliganded state' 8ZMU unspecified EMDB ;Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and a substrate in the steady stage of reaction ; EMD-60268 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email nakasako@phys.keio.ac.jp _pdbx_contact_author.name_first Masayoshi _pdbx_contact_author.name_last Nakasako _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1639-0173 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wakabayashi, T.' 1 0000-0002-4018-1550 'Nakasako, M.' 2 0000-0003-1639-0173 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by crystal structure and cryoEM-sampling of metastable conformation in action ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wakabayashi, T.' 1 0000-0002-4018-1550 primary 'Oide, M.' 2 0000-0002-6314-1578 primary 'Matsui, Y.' 3 ? primary 'Nakasako, M.' 4 0000-0003-1639-0173 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutamate dehydrogenase' 46360.004 1 1.4.1.3 W89F ? ? 2 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 3 water nat water 18.015 24 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GDH # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTV KALATFMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETI MRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVT PEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVA VSRVYQAMKDRGWVKK ; _entity_poly.pdbx_seq_one_letter_code_can ;IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTV KALATFMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETI MRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVT PEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVA VSRVYQAMKDRGWVKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ASP n 1 3 PRO n 1 4 PHE n 1 5 GLU n 1 6 MET n 1 7 ALA n 1 8 VAL n 1 9 LYS n 1 10 GLN n 1 11 LEU n 1 12 GLU n 1 13 ARG n 1 14 ALA n 1 15 ALA n 1 16 GLN n 1 17 TYR n 1 18 MET n 1 19 ASP n 1 20 ILE n 1 21 SER n 1 22 GLU n 1 23 GLU n 1 24 ALA n 1 25 LEU n 1 26 GLU n 1 27 TRP n 1 28 LEU n 1 29 LYS n 1 30 LYS n 1 31 PRO n 1 32 MET n 1 33 ARG n 1 34 ILE n 1 35 VAL n 1 36 GLU n 1 37 VAL n 1 38 SER n 1 39 VAL n 1 40 PRO n 1 41 ILE n 1 42 GLU n 1 43 MET n 1 44 ASP n 1 45 ASP n 1 46 GLY n 1 47 SER n 1 48 VAL n 1 49 LYS n 1 50 VAL n 1 51 PHE n 1 52 THR n 1 53 GLY n 1 54 PHE n 1 55 ARG n 1 56 VAL n 1 57 GLN n 1 58 HIS n 1 59 ASN n 1 60 TRP n 1 61 ALA n 1 62 ARG n 1 63 GLY n 1 64 PRO n 1 65 THR n 1 66 LYS n 1 67 GLY n 1 68 GLY n 1 69 ILE n 1 70 ARG n 1 71 TRP n 1 72 HIS n 1 73 PRO n 1 74 ALA n 1 75 GLU n 1 76 THR n 1 77 LEU n 1 78 SER n 1 79 THR n 1 80 VAL n 1 81 LYS n 1 82 ALA n 1 83 LEU n 1 84 ALA n 1 85 THR n 1 86 PHE n 1 87 MET n 1 88 THR n 1 89 TRP n 1 90 LYS n 1 91 VAL n 1 92 ALA n 1 93 VAL n 1 94 VAL n 1 95 ASP n 1 96 LEU n 1 97 PRO n 1 98 TYR n 1 99 GLY n 1 100 GLY n 1 101 GLY n 1 102 LYS n 1 103 GLY n 1 104 GLY n 1 105 ILE n 1 106 ILE n 1 107 VAL n 1 108 ASN n 1 109 PRO n 1 110 LYS n 1 111 GLU n 1 112 LEU n 1 113 SER n 1 114 GLU n 1 115 ARG n 1 116 GLU n 1 117 GLN n 1 118 GLU n 1 119 ARG n 1 120 LEU n 1 121 ALA n 1 122 ARG n 1 123 ALA n 1 124 TYR n 1 125 ILE n 1 126 ARG n 1 127 ALA n 1 128 VAL n 1 129 TYR n 1 130 ASP n 1 131 VAL n 1 132 ILE n 1 133 GLY n 1 134 PRO n 1 135 TRP n 1 136 THR n 1 137 ASP n 1 138 ILE n 1 139 PRO n 1 140 ALA n 1 141 PRO n 1 142 ASP n 1 143 VAL n 1 144 TYR n 1 145 THR n 1 146 ASN n 1 147 PRO n 1 148 LYS n 1 149 ILE n 1 150 MET n 1 151 GLY n 1 152 TRP n 1 153 MET n 1 154 MET n 1 155 ASP n 1 156 GLU n 1 157 TYR n 1 158 GLU n 1 159 THR n 1 160 ILE n 1 161 MET n 1 162 ARG n 1 163 ARG n 1 164 LYS n 1 165 GLY n 1 166 PRO n 1 167 ALA n 1 168 PHE n 1 169 GLY n 1 170 VAL n 1 171 ILE n 1 172 THR n 1 173 GLY n 1 174 LYS n 1 175 PRO n 1 176 LEU n 1 177 SER n 1 178 ILE n 1 179 GLY n 1 180 GLY n 1 181 SER n 1 182 LEU n 1 183 GLY n 1 184 ARG n 1 185 GLY n 1 186 THR n 1 187 ALA n 1 188 THR n 1 189 ALA n 1 190 GLN n 1 191 GLY n 1 192 ALA n 1 193 ILE n 1 194 PHE n 1 195 THR n 1 196 ILE n 1 197 ARG n 1 198 GLU n 1 199 ALA n 1 200 ALA n 1 201 LYS n 1 202 ALA n 1 203 LEU n 1 204 GLY n 1 205 ILE n 1 206 ASP n 1 207 LEU n 1 208 LYS n 1 209 GLY n 1 210 LYS n 1 211 LYS n 1 212 ILE n 1 213 ALA n 1 214 VAL n 1 215 GLN n 1 216 GLY n 1 217 TYR n 1 218 GLY n 1 219 ASN n 1 220 ALA n 1 221 GLY n 1 222 TYR n 1 223 TYR n 1 224 THR n 1 225 ALA n 1 226 LYS n 1 227 LEU n 1 228 ALA n 1 229 LYS n 1 230 GLU n 1 231 GLN n 1 232 LEU n 1 233 GLY n 1 234 MET n 1 235 THR n 1 236 VAL n 1 237 VAL n 1 238 ALA n 1 239 VAL n 1 240 SER n 1 241 ASP n 1 242 SER n 1 243 ARG n 1 244 GLY n 1 245 GLY n 1 246 ILE n 1 247 TYR n 1 248 ASN n 1 249 PRO n 1 250 ASP n 1 251 GLY n 1 252 LEU n 1 253 ASP n 1 254 PRO n 1 255 ASP n 1 256 GLU n 1 257 VAL n 1 258 LEU n 1 259 LYS n 1 260 TRP n 1 261 LYS n 1 262 ARG n 1 263 GLU n 1 264 HIS n 1 265 GLY n 1 266 SER n 1 267 VAL n 1 268 LYS n 1 269 ASP n 1 270 PHE n 1 271 PRO n 1 272 GLY n 1 273 ALA n 1 274 THR n 1 275 ASN n 1 276 ILE n 1 277 THR n 1 278 ASN n 1 279 GLU n 1 280 GLU n 1 281 LEU n 1 282 LEU n 1 283 GLU n 1 284 LEU n 1 285 GLU n 1 286 VAL n 1 287 ASP n 1 288 VAL n 1 289 LEU n 1 290 ALA n 1 291 PRO n 1 292 ALA n 1 293 ALA n 1 294 ILE n 1 295 GLU n 1 296 GLU n 1 297 VAL n 1 298 ILE n 1 299 THR n 1 300 GLU n 1 301 LYS n 1 302 ASN n 1 303 ALA n 1 304 ASP n 1 305 ASN n 1 306 ILE n 1 307 LYS n 1 308 ALA n 1 309 LYS n 1 310 ILE n 1 311 VAL n 1 312 ALA n 1 313 GLU n 1 314 VAL n 1 315 ALA n 1 316 ASN n 1 317 GLY n 1 318 PRO n 1 319 VAL n 1 320 THR n 1 321 PRO n 1 322 GLU n 1 323 ALA n 1 324 ASP n 1 325 ASP n 1 326 ILE n 1 327 LEU n 1 328 ARG n 1 329 GLU n 1 330 LYS n 1 331 GLY n 1 332 ILE n 1 333 LEU n 1 334 GLN n 1 335 ILE n 1 336 PRO n 1 337 ASP n 1 338 PHE n 1 339 LEU n 1 340 CYS n 1 341 ASN n 1 342 ALA n 1 343 GLY n 1 344 GLY n 1 345 VAL n 1 346 THR n 1 347 VAL n 1 348 SER n 1 349 TYR n 1 350 PHE n 1 351 GLU n 1 352 TRP n 1 353 VAL n 1 354 GLN n 1 355 ASN n 1 356 ILE n 1 357 ASN n 1 358 GLY n 1 359 TYR n 1 360 TYR n 1 361 TRP n 1 362 THR n 1 363 GLU n 1 364 GLU n 1 365 GLU n 1 366 VAL n 1 367 ARG n 1 368 GLU n 1 369 LYS n 1 370 LEU n 1 371 ASP n 1 372 LYS n 1 373 LYS n 1 374 MET n 1 375 THR n 1 376 LYS n 1 377 ALA n 1 378 PHE n 1 379 TRP n 1 380 GLU n 1 381 VAL n 1 382 TYR n 1 383 ASN n 1 384 THR n 1 385 HIS n 1 386 LYS n 1 387 ASP n 1 388 LYS n 1 389 ASN n 1 390 ILE n 1 391 HIS n 1 392 MET n 1 393 ARG n 1 394 ASP n 1 395 ALA n 1 396 ALA n 1 397 TYR n 1 398 VAL n 1 399 VAL n 1 400 ALA n 1 401 VAL n 1 402 SER n 1 403 ARG n 1 404 VAL n 1 405 TYR n 1 406 GLN n 1 407 ALA n 1 408 MET n 1 409 LYS n 1 410 ASP n 1 411 ARG n 1 412 GLY n 1 413 TRP n 1 414 VAL n 1 415 LYS n 1 416 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 416 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'gdhA, gdh' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermococcus profundus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 49899 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 4 4 ILE ILE A . n A 1 2 ASP 2 5 5 ASP ASP A . n A 1 3 PRO 3 6 6 PRO PRO A . n A 1 4 PHE 4 7 7 PHE PHE A . n A 1 5 GLU 5 8 8 GLU GLU A . n A 1 6 MET 6 9 9 MET MET A . n A 1 7 ALA 7 10 10 ALA ALA A . n A 1 8 VAL 8 11 11 VAL VAL A . n A 1 9 LYS 9 12 12 LYS LYS A . n A 1 10 GLN 10 13 13 GLN GLN A . n A 1 11 LEU 11 14 14 LEU LEU A . n A 1 12 GLU 12 15 15 GLU GLU A . n A 1 13 ARG 13 16 16 ARG ARG A . n A 1 14 ALA 14 17 17 ALA ALA A . n A 1 15 ALA 15 18 18 ALA ALA A . n A 1 16 GLN 16 19 19 GLN GLN A . n A 1 17 TYR 17 20 20 TYR TYR A . n A 1 18 MET 18 21 21 MET MET A . n A 1 19 ASP 19 22 22 ASP ASP A . n A 1 20 ILE 20 23 23 ILE ILE A . n A 1 21 SER 21 24 24 SER SER A . n A 1 22 GLU 22 25 25 GLU GLU A . n A 1 23 GLU 23 26 26 GLU GLU A . n A 1 24 ALA 24 27 27 ALA ALA A . n A 1 25 LEU 25 28 28 LEU LEU A . n A 1 26 GLU 26 29 29 GLU GLU A . n A 1 27 TRP 27 30 30 TRP TRP A . n A 1 28 LEU 28 31 31 LEU LEU A . n A 1 29 LYS 29 32 32 LYS LYS A . n A 1 30 LYS 30 33 33 LYS LYS A . n A 1 31 PRO 31 34 34 PRO PRO A . n A 1 32 MET 32 35 35 MET MET A . n A 1 33 ARG 33 36 36 ARG ARG A . n A 1 34 ILE 34 37 37 ILE ILE A . n A 1 35 VAL 35 38 38 VAL VAL A . n A 1 36 GLU 36 39 39 GLU GLU A . n A 1 37 VAL 37 40 40 VAL VAL A . n A 1 38 SER 38 41 41 SER SER A . n A 1 39 VAL 39 42 42 VAL VAL A . n A 1 40 PRO 40 43 43 PRO PRO A . n A 1 41 ILE 41 44 44 ILE ILE A . n A 1 42 GLU 42 45 45 GLU GLU A . n A 1 43 MET 43 46 46 MET MET A . n A 1 44 ASP 44 47 47 ASP ASP A . n A 1 45 ASP 45 48 48 ASP ASP A . n A 1 46 GLY 46 49 49 GLY GLY A . n A 1 47 SER 47 50 50 SER SER A . n A 1 48 VAL 48 51 51 VAL VAL A . n A 1 49 LYS 49 52 52 LYS LYS A . n A 1 50 VAL 50 53 53 VAL VAL A . n A 1 51 PHE 51 54 54 PHE PHE A . n A 1 52 THR 52 55 55 THR THR A . n A 1 53 GLY 53 56 56 GLY GLY A . n A 1 54 PHE 54 57 57 PHE PHE A . n A 1 55 ARG 55 58 58 ARG ARG A . n A 1 56 VAL 56 59 59 VAL VAL A . n A 1 57 GLN 57 60 60 GLN GLN A . n A 1 58 HIS 58 61 61 HIS HIS A . n A 1 59 ASN 59 62 62 ASN ASN A . n A 1 60 TRP 60 63 63 TRP TRP A . n A 1 61 ALA 61 64 64 ALA ALA A . n A 1 62 ARG 62 65 65 ARG ARG A . n A 1 63 GLY 63 66 66 GLY GLY A . n A 1 64 PRO 64 67 67 PRO PRO A . n A 1 65 THR 65 68 68 THR THR A . n A 1 66 LYS 66 69 69 LYS LYS A . n A 1 67 GLY 67 70 70 GLY GLY A . n A 1 68 GLY 68 71 71 GLY GLY A . n A 1 69 ILE 69 72 72 ILE ILE A . n A 1 70 ARG 70 73 73 ARG ARG A . n A 1 71 TRP 71 74 74 TRP TRP A . n A 1 72 HIS 72 75 75 HIS HIS A . n A 1 73 PRO 73 76 76 PRO PRO A . n A 1 74 ALA 74 77 77 ALA ALA A . n A 1 75 GLU 75 78 78 GLU GLU A . n A 1 76 THR 76 79 79 THR THR A . n A 1 77 LEU 77 80 80 LEU LEU A . n A 1 78 SER 78 81 81 SER SER A . n A 1 79 THR 79 82 82 THR THR A . n A 1 80 VAL 80 83 83 VAL VAL A . n A 1 81 LYS 81 84 84 LYS LYS A . n A 1 82 ALA 82 85 85 ALA ALA A . n A 1 83 LEU 83 86 86 LEU LEU A . n A 1 84 ALA 84 87 87 ALA ALA A . n A 1 85 THR 85 88 88 THR THR A . n A 1 86 PHE 86 89 89 PHE PHE A . n A 1 87 MET 87 90 90 MET MET A . n A 1 88 THR 88 91 91 THR THR A . n A 1 89 TRP 89 92 92 TRP TRP A . n A 1 90 LYS 90 93 93 LYS LYS A . n A 1 91 VAL 91 94 94 VAL VAL A . n A 1 92 ALA 92 95 95 ALA ALA A . n A 1 93 VAL 93 96 96 VAL VAL A . n A 1 94 VAL 94 97 97 VAL VAL A . n A 1 95 ASP 95 98 98 ASP ASP A . n A 1 96 LEU 96 99 99 LEU LEU A . n A 1 97 PRO 97 100 100 PRO PRO A . n A 1 98 TYR 98 101 101 TYR TYR A . n A 1 99 GLY 99 102 102 GLY GLY A . n A 1 100 GLY 100 103 103 GLY GLY A . n A 1 101 GLY 101 104 104 GLY GLY A . n A 1 102 LYS 102 105 105 LYS LYS A . n A 1 103 GLY 103 106 106 GLY GLY A . n A 1 104 GLY 104 107 107 GLY GLY A . n A 1 105 ILE 105 108 108 ILE ILE A . n A 1 106 ILE 106 109 109 ILE ILE A . n A 1 107 VAL 107 110 110 VAL VAL A . n A 1 108 ASN 108 111 111 ASN ASN A . n A 1 109 PRO 109 112 112 PRO PRO A . n A 1 110 LYS 110 113 113 LYS LYS A . n A 1 111 GLU 111 114 114 GLU GLU A . n A 1 112 LEU 112 115 115 LEU LEU A . n A 1 113 SER 113 116 116 SER SER A . n A 1 114 GLU 114 117 117 GLU GLU A . n A 1 115 ARG 115 118 118 ARG ARG A . n A 1 116 GLU 116 119 119 GLU GLU A . n A 1 117 GLN 117 120 120 GLN GLN A . n A 1 118 GLU 118 121 121 GLU GLU A . n A 1 119 ARG 119 122 122 ARG ARG A . n A 1 120 LEU 120 123 123 LEU LEU A . n A 1 121 ALA 121 124 124 ALA ALA A . n A 1 122 ARG 122 125 125 ARG ARG A . n A 1 123 ALA 123 126 126 ALA ALA A . n A 1 124 TYR 124 127 127 TYR TYR A . n A 1 125 ILE 125 128 128 ILE ILE A . n A 1 126 ARG 126 129 129 ARG ARG A . n A 1 127 ALA 127 130 130 ALA ALA A . n A 1 128 VAL 128 131 131 VAL VAL A . n A 1 129 TYR 129 132 132 TYR TYR A . n A 1 130 ASP 130 133 133 ASP ASP A . n A 1 131 VAL 131 134 134 VAL VAL A . n A 1 132 ILE 132 135 135 ILE ILE A . n A 1 133 GLY 133 136 136 GLY GLY A . n A 1 134 PRO 134 137 137 PRO PRO A . n A 1 135 TRP 135 138 138 TRP TRP A . n A 1 136 THR 136 139 139 THR THR A . n A 1 137 ASP 137 140 140 ASP ASP A . n A 1 138 ILE 138 141 141 ILE ILE A . n A 1 139 PRO 139 142 142 PRO PRO A . n A 1 140 ALA 140 143 143 ALA ALA A . n A 1 141 PRO 141 144 144 PRO PRO A . n A 1 142 ASP 142 145 145 ASP ASP A . n A 1 143 VAL 143 146 146 VAL VAL A . n A 1 144 TYR 144 147 147 TYR TYR A . n A 1 145 THR 145 148 148 THR THR A . n A 1 146 ASN 146 149 149 ASN ASN A . n A 1 147 PRO 147 150 150 PRO PRO A . n A 1 148 LYS 148 151 151 LYS LYS A . n A 1 149 ILE 149 152 152 ILE ILE A . n A 1 150 MET 150 153 153 MET MET A . n A 1 151 GLY 151 154 154 GLY GLY A . n A 1 152 TRP 152 155 155 TRP TRP A . n A 1 153 MET 153 156 156 MET MET A . n A 1 154 MET 154 157 157 MET MET A . n A 1 155 ASP 155 158 158 ASP ASP A . n A 1 156 GLU 156 159 159 GLU GLU A . n A 1 157 TYR 157 160 160 TYR TYR A . n A 1 158 GLU 158 161 161 GLU GLU A . n A 1 159 THR 159 162 162 THR THR A . n A 1 160 ILE 160 163 163 ILE ILE A . n A 1 161 MET 161 164 164 MET MET A . n A 1 162 ARG 162 165 165 ARG ARG A . n A 1 163 ARG 163 166 166 ARG ARG A . n A 1 164 LYS 164 167 167 LYS LYS A . n A 1 165 GLY 165 168 168 GLY GLY A . n A 1 166 PRO 166 169 169 PRO PRO A . n A 1 167 ALA 167 170 170 ALA ALA A . n A 1 168 PHE 168 171 171 PHE PHE A . n A 1 169 GLY 169 172 172 GLY GLY A . n A 1 170 VAL 170 173 173 VAL VAL A . n A 1 171 ILE 171 174 174 ILE ILE A . n A 1 172 THR 172 175 175 THR THR A . n A 1 173 GLY 173 176 176 GLY GLY A . n A 1 174 LYS 174 177 177 LYS LYS A . n A 1 175 PRO 175 178 178 PRO PRO A . n A 1 176 LEU 176 179 179 LEU LEU A . n A 1 177 SER 177 180 180 SER SER A . n A 1 178 ILE 178 181 181 ILE ILE A . n A 1 179 GLY 179 182 182 GLY GLY A . n A 1 180 GLY 180 183 183 GLY GLY A . n A 1 181 SER 181 184 184 SER SER A . n A 1 182 LEU 182 185 185 LEU LEU A . n A 1 183 GLY 183 186 186 GLY GLY A . n A 1 184 ARG 184 187 187 ARG ARG A . n A 1 185 GLY 185 188 188 GLY GLY A . n A 1 186 THR 186 189 189 THR THR A . n A 1 187 ALA 187 190 190 ALA ALA A . n A 1 188 THR 188 191 191 THR THR A . n A 1 189 ALA 189 192 192 ALA ALA A . n A 1 190 GLN 190 193 193 GLN GLN A . n A 1 191 GLY 191 194 194 GLY GLY A . n A 1 192 ALA 192 195 195 ALA ALA A . n A 1 193 ILE 193 196 196 ILE ILE A . n A 1 194 PHE 194 197 197 PHE PHE A . n A 1 195 THR 195 198 198 THR THR A . n A 1 196 ILE 196 199 199 ILE ILE A . n A 1 197 ARG 197 200 200 ARG ARG A . n A 1 198 GLU 198 201 201 GLU GLU A . n A 1 199 ALA 199 202 202 ALA ALA A . n A 1 200 ALA 200 203 203 ALA ALA A . n A 1 201 LYS 201 204 204 LYS LYS A . n A 1 202 ALA 202 205 205 ALA ALA A . n A 1 203 LEU 203 206 206 LEU LEU A . n A 1 204 GLY 204 207 207 GLY GLY A . n A 1 205 ILE 205 208 208 ILE ILE A . n A 1 206 ASP 206 209 209 ASP ASP A . n A 1 207 LEU 207 210 210 LEU LEU A . n A 1 208 LYS 208 211 211 LYS LYS A . n A 1 209 GLY 209 212 212 GLY GLY A . n A 1 210 LYS 210 213 213 LYS LYS A . n A 1 211 LYS 211 214 214 LYS LYS A . n A 1 212 ILE 212 215 215 ILE ILE A . n A 1 213 ALA 213 216 216 ALA ALA A . n A 1 214 VAL 214 217 217 VAL VAL A . n A 1 215 GLN 215 218 218 GLN GLN A . n A 1 216 GLY 216 219 219 GLY GLY A . n A 1 217 TYR 217 220 220 TYR TYR A . n A 1 218 GLY 218 221 221 GLY GLY A . n A 1 219 ASN 219 222 222 ASN ASN A . n A 1 220 ALA 220 223 223 ALA ALA A . n A 1 221 GLY 221 224 224 GLY GLY A . n A 1 222 TYR 222 225 225 TYR TYR A . n A 1 223 TYR 223 226 226 TYR TYR A . n A 1 224 THR 224 227 227 THR THR A . n A 1 225 ALA 225 228 228 ALA ALA A . n A 1 226 LYS 226 229 229 LYS LYS A . n A 1 227 LEU 227 230 230 LEU LEU A . n A 1 228 ALA 228 231 231 ALA ALA A . n A 1 229 LYS 229 232 232 LYS LYS A . n A 1 230 GLU 230 233 233 GLU GLU A . n A 1 231 GLN 231 234 234 GLN GLN A . n A 1 232 LEU 232 235 235 LEU LEU A . n A 1 233 GLY 233 236 236 GLY GLY A . n A 1 234 MET 234 237 237 MET MET A . n A 1 235 THR 235 238 238 THR THR A . n A 1 236 VAL 236 239 239 VAL VAL A . n A 1 237 VAL 237 240 240 VAL VAL A . n A 1 238 ALA 238 241 241 ALA ALA A . n A 1 239 VAL 239 242 242 VAL VAL A . n A 1 240 SER 240 243 243 SER SER A . n A 1 241 ASP 241 244 244 ASP ASP A . n A 1 242 SER 242 245 245 SER SER A . n A 1 243 ARG 243 246 246 ARG ARG A . n A 1 244 GLY 244 247 247 GLY GLY A . n A 1 245 GLY 245 248 248 GLY GLY A . n A 1 246 ILE 246 249 249 ILE ILE A . n A 1 247 TYR 247 250 250 TYR TYR A . n A 1 248 ASN 248 251 251 ASN ASN A . n A 1 249 PRO 249 252 252 PRO PRO A . n A 1 250 ASP 250 253 253 ASP ASP A . n A 1 251 GLY 251 254 254 GLY GLY A . n A 1 252 LEU 252 255 255 LEU LEU A . n A 1 253 ASP 253 256 256 ASP ASP A . n A 1 254 PRO 254 257 257 PRO PRO A . n A 1 255 ASP 255 258 258 ASP ASP A . n A 1 256 GLU 256 259 259 GLU GLU A . n A 1 257 VAL 257 260 260 VAL VAL A . n A 1 258 LEU 258 261 261 LEU LEU A . n A 1 259 LYS 259 262 262 LYS LYS A . n A 1 260 TRP 260 263 263 TRP TRP A . n A 1 261 LYS 261 264 264 LYS LYS A . n A 1 262 ARG 262 265 265 ARG ARG A . n A 1 263 GLU 263 266 266 GLU GLU A . n A 1 264 HIS 264 267 267 HIS HIS A . n A 1 265 GLY 265 268 268 GLY GLY A . n A 1 266 SER 266 269 269 SER SER A . n A 1 267 VAL 267 270 270 VAL VAL A . n A 1 268 LYS 268 271 271 LYS LYS A . n A 1 269 ASP 269 272 272 ASP ASP A . n A 1 270 PHE 270 273 273 PHE PHE A . n A 1 271 PRO 271 274 274 PRO PRO A . n A 1 272 GLY 272 275 275 GLY GLY A . n A 1 273 ALA 273 276 276 ALA ALA A . n A 1 274 THR 274 277 277 THR THR A . n A 1 275 ASN 275 278 278 ASN ASN A . n A 1 276 ILE 276 279 279 ILE ILE A . n A 1 277 THR 277 280 280 THR THR A . n A 1 278 ASN 278 281 281 ASN ASN A . n A 1 279 GLU 279 282 282 GLU GLU A . n A 1 280 GLU 280 283 283 GLU GLU A . n A 1 281 LEU 281 284 284 LEU LEU A . n A 1 282 LEU 282 285 285 LEU LEU A . n A 1 283 GLU 283 286 286 GLU GLU A . n A 1 284 LEU 284 287 287 LEU LEU A . n A 1 285 GLU 285 288 288 GLU GLU A . n A 1 286 VAL 286 289 289 VAL VAL A . n A 1 287 ASP 287 290 290 ASP ASP A . n A 1 288 VAL 288 291 291 VAL VAL A . n A 1 289 LEU 289 292 292 LEU LEU A . n A 1 290 ALA 290 293 293 ALA ALA A . n A 1 291 PRO 291 294 294 PRO PRO A . n A 1 292 ALA 292 295 295 ALA ALA A . n A 1 293 ALA 293 296 296 ALA ALA A . n A 1 294 ILE 294 297 297 ILE ILE A . n A 1 295 GLU 295 298 298 GLU GLU A . n A 1 296 GLU 296 299 299 GLU GLU A . n A 1 297 VAL 297 300 300 VAL VAL A . n A 1 298 ILE 298 301 301 ILE ILE A . n A 1 299 THR 299 302 302 THR THR A . n A 1 300 GLU 300 303 303 GLU GLU A . n A 1 301 LYS 301 304 304 LYS LYS A . n A 1 302 ASN 302 305 305 ASN ASN A . n A 1 303 ALA 303 306 306 ALA ALA A . n A 1 304 ASP 304 307 307 ASP ASP A . n A 1 305 ASN 305 308 308 ASN ASN A . n A 1 306 ILE 306 309 309 ILE ILE A . n A 1 307 LYS 307 310 310 LYS LYS A . n A 1 308 ALA 308 311 311 ALA ALA A . n A 1 309 LYS 309 312 312 LYS LYS A . n A 1 310 ILE 310 313 313 ILE ILE A . n A 1 311 VAL 311 314 314 VAL VAL A . n A 1 312 ALA 312 315 315 ALA ALA A . n A 1 313 GLU 313 316 316 GLU GLU A . n A 1 314 VAL 314 317 317 VAL VAL A . n A 1 315 ALA 315 318 318 ALA ALA A . n A 1 316 ASN 316 319 319 ASN ASN A . n A 1 317 GLY 317 320 320 GLY GLY A . n A 1 318 PRO 318 321 321 PRO PRO A . n A 1 319 VAL 319 322 322 VAL VAL A . n A 1 320 THR 320 323 323 THR THR A . n A 1 321 PRO 321 324 324 PRO PRO A . n A 1 322 GLU 322 325 325 GLU GLU A . n A 1 323 ALA 323 326 326 ALA ALA A . n A 1 324 ASP 324 327 327 ASP ASP A . n A 1 325 ASP 325 328 328 ASP ASP A . n A 1 326 ILE 326 329 329 ILE ILE A . n A 1 327 LEU 327 330 330 LEU LEU A . n A 1 328 ARG 328 331 331 ARG ARG A . n A 1 329 GLU 329 332 332 GLU GLU A . n A 1 330 LYS 330 333 333 LYS LYS A . n A 1 331 GLY 331 334 334 GLY GLY A . n A 1 332 ILE 332 335 335 ILE ILE A . n A 1 333 LEU 333 336 336 LEU LEU A . n A 1 334 GLN 334 337 337 GLN GLN A . n A 1 335 ILE 335 338 338 ILE ILE A . n A 1 336 PRO 336 339 339 PRO PRO A . n A 1 337 ASP 337 340 340 ASP ASP A . n A 1 338 PHE 338 341 341 PHE PHE A . n A 1 339 LEU 339 342 342 LEU LEU A . n A 1 340 CYS 340 343 343 CYS CYS A . n A 1 341 ASN 341 344 344 ASN ASN A . n A 1 342 ALA 342 345 345 ALA ALA A . n A 1 343 GLY 343 346 346 GLY GLY A . n A 1 344 GLY 344 347 347 GLY GLY A . n A 1 345 VAL 345 348 348 VAL VAL A . n A 1 346 THR 346 349 349 THR THR A . n A 1 347 VAL 347 350 350 VAL VAL A . n A 1 348 SER 348 351 351 SER SER A . n A 1 349 TYR 349 352 352 TYR TYR A . n A 1 350 PHE 350 353 353 PHE PHE A . n A 1 351 GLU 351 354 354 GLU GLU A . n A 1 352 TRP 352 355 355 TRP TRP A . n A 1 353 VAL 353 356 356 VAL VAL A . n A 1 354 GLN 354 357 357 GLN GLN A . n A 1 355 ASN 355 358 358 ASN ASN A . n A 1 356 ILE 356 359 359 ILE ILE A . n A 1 357 ASN 357 360 360 ASN ASN A . n A 1 358 GLY 358 361 361 GLY GLY A . n A 1 359 TYR 359 362 362 TYR TYR A . n A 1 360 TYR 360 363 363 TYR TYR A . n A 1 361 TRP 361 364 364 TRP TRP A . n A 1 362 THR 362 365 365 THR THR A . n A 1 363 GLU 363 366 366 GLU GLU A . n A 1 364 GLU 364 367 367 GLU GLU A . n A 1 365 GLU 365 368 368 GLU GLU A . n A 1 366 VAL 366 369 369 VAL VAL A . n A 1 367 ARG 367 370 370 ARG ARG A . n A 1 368 GLU 368 371 371 GLU GLU A . n A 1 369 LYS 369 372 372 LYS LYS A . n A 1 370 LEU 370 373 373 LEU LEU A . n A 1 371 ASP 371 374 374 ASP ASP A . n A 1 372 LYS 372 375 375 LYS LYS A . n A 1 373 LYS 373 376 376 LYS LYS A . n A 1 374 MET 374 377 377 MET MET A . n A 1 375 THR 375 378 378 THR THR A . n A 1 376 LYS 376 379 379 LYS LYS A . n A 1 377 ALA 377 380 380 ALA ALA A . n A 1 378 PHE 378 381 381 PHE PHE A . n A 1 379 TRP 379 382 382 TRP TRP A . n A 1 380 GLU 380 383 383 GLU GLU A . n A 1 381 VAL 381 384 384 VAL VAL A . n A 1 382 TYR 382 385 385 TYR TYR A . n A 1 383 ASN 383 386 386 ASN ASN A . n A 1 384 THR 384 387 387 THR THR A . n A 1 385 HIS 385 388 388 HIS HIS A . n A 1 386 LYS 386 389 389 LYS LYS A . n A 1 387 ASP 387 390 390 ASP ASP A . n A 1 388 LYS 388 391 391 LYS LYS A . n A 1 389 ASN 389 392 392 ASN ASN A . n A 1 390 ILE 390 393 393 ILE ILE A . n A 1 391 HIS 391 394 394 HIS HIS A . n A 1 392 MET 392 395 395 MET MET A . n A 1 393 ARG 393 396 396 ARG ARG A . n A 1 394 ASP 394 397 397 ASP ASP A . n A 1 395 ALA 395 398 398 ALA ALA A . n A 1 396 ALA 396 399 399 ALA ALA A . n A 1 397 TYR 397 400 400 TYR TYR A . n A 1 398 VAL 398 401 401 VAL VAL A . n A 1 399 VAL 399 402 402 VAL VAL A . n A 1 400 ALA 400 403 403 ALA ALA A . n A 1 401 VAL 401 404 404 VAL VAL A . n A 1 402 SER 402 405 405 SER SER A . n A 1 403 ARG 403 406 406 ARG ARG A . n A 1 404 VAL 404 407 407 VAL VAL A . n A 1 405 TYR 405 408 408 TYR TYR A . n A 1 406 GLN 406 409 409 GLN GLN A . n A 1 407 ALA 407 410 410 ALA ALA A . n A 1 408 MET 408 411 411 MET MET A . n A 1 409 LYS 409 412 412 LYS LYS A . n A 1 410 ASP 410 413 413 ASP ASP A . n A 1 411 ARG 411 414 414 ARG ARG A . n A 1 412 GLY 412 415 415 GLY GLY A . n A 1 413 TRP 413 416 416 TRP TRP A . n A 1 414 VAL 414 417 417 VAL VAL A . n A 1 415 LYS 415 418 418 LYS LYS A . n A 1 416 LYS 416 419 419 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP 1 500 500 NDP NDP A . C 3 HOH 1 601 628 HOH HOH A . C 3 HOH 2 602 612 HOH HOH A . C 3 HOH 3 603 608 HOH HOH A . C 3 HOH 4 604 631 HOH HOH A . C 3 HOH 5 605 622 HOH HOH A . C 3 HOH 6 606 627 HOH HOH A . C 3 HOH 7 607 629 HOH HOH A . C 3 HOH 8 608 623 HOH HOH A . C 3 HOH 9 609 601 HOH HOH A . C 3 HOH 10 610 633 HOH HOH A . C 3 HOH 11 611 602 HOH HOH A . C 3 HOH 12 612 644 HOH HOH A . C 3 HOH 13 613 613 HOH HOH A . C 3 HOH 14 614 617 HOH HOH A . C 3 HOH 15 615 604 HOH HOH A . C 3 HOH 16 616 603 HOH HOH A . C 3 HOH 17 617 610 HOH HOH A . C 3 HOH 18 618 611 HOH HOH A . C 3 HOH 19 619 621 HOH HOH A . C 3 HOH 20 620 626 HOH HOH A . C 3 HOH 21 621 605 HOH HOH A . C 3 HOH 22 622 619 HOH HOH A . C 3 HOH 23 623 620 HOH HOH A . C 3 HOH 24 624 618 HOH HOH A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZND _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8ZND _struct.title ;Cryo-EM structure of W89F mutated Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and a substrate in the steady stage of reaction ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZND _struct_keywords.text 'Oxidoreductase, Complex, NADPH, substrate, Mutant' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHE3_THEPR _struct_ref.pdbx_db_accession O74024 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTV KALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETI MRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVT PEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVA VSRVYQAMKDRGWVKK ; _struct_ref.pdbx_align_begin 4 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8ZND _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 416 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O74024 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 419 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 419 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 8ZND _struct_ref_seq_dif.mon_id PHE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 86 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O74024 _struct_ref_seq_dif.db_mon_id TRP _struct_ref_seq_dif.pdbx_seq_db_seq_num 89 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 89 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 2 ? ALA A 15 ? ASP A 5 ALA A 18 1 ? 14 HELX_P HELX_P2 AA2 GLN A 16 ? MET A 18 ? GLN A 19 MET A 21 5 ? 3 HELX_P HELX_P3 AA3 SER A 21 ? LYS A 29 ? SER A 24 LYS A 32 1 ? 9 HELX_P HELX_P4 AA4 THR A 76 ? VAL A 94 ? THR A 79 VAL A 97 1 ? 19 HELX_P HELX_P5 AA5 ASN A 108 ? LEU A 112 ? ASN A 111 LEU A 115 5 ? 5 HELX_P HELX_P6 AA6 SER A 113 ? TYR A 129 ? SER A 116 TYR A 132 1 ? 17 HELX_P HELX_P7 AA7 ASP A 130 ? ILE A 132 ? ASP A 133 ILE A 135 5 ? 3 HELX_P HELX_P8 AA8 ASN A 146 ? ARG A 162 ? ASN A 149 ARG A 165 1 ? 17 HELX_P HELX_P9 AA9 ALA A 167 ? ILE A 171 ? ALA A 170 ILE A 174 5 ? 5 HELX_P HELX_P10 AB1 THR A 186 ? GLY A 204 ? THR A 189 GLY A 207 1 ? 19 HELX_P HELX_P11 AB2 GLY A 218 ? GLN A 231 ? GLY A 221 GLN A 234 1 ? 14 HELX_P HELX_P12 AB3 ASP A 253 ? GLY A 265 ? ASP A 256 GLY A 268 1 ? 13 HELX_P HELX_P13 AB4 THR A 277 ? GLU A 283 ? THR A 280 GLU A 286 1 ? 7 HELX_P HELX_P14 AB5 ASN A 302 ? ILE A 306 ? ASN A 305 ILE A 309 5 ? 5 HELX_P HELX_P15 AB6 THR A 320 ? GLY A 331 ? THR A 323 GLY A 334 1 ? 12 HELX_P HELX_P16 AB7 PRO A 336 ? ASN A 341 ? PRO A 339 ASN A 344 1 ? 6 HELX_P HELX_P17 AB8 ALA A 342 ? GLY A 358 ? ALA A 345 GLY A 361 1 ? 17 HELX_P HELX_P18 AB9 THR A 362 ? ASN A 389 ? THR A 365 ASN A 392 1 ? 28 HELX_P HELX_P19 AC1 HIS A 391 ? ARG A 411 ? HIS A 394 ARG A 414 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA3 5 6 ? parallel AA3 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 33 ? GLU A 42 ? ARG A 36 GLU A 45 AA1 2 VAL A 48 ? ASN A 59 ? VAL A 51 ASN A 62 AA1 3 GLY A 99 ? ILE A 106 ? GLY A 102 ILE A 109 AA1 4 ILE A 69 ? HIS A 72 ? ILE A 72 HIS A 75 AA2 1 ARG A 33 ? GLU A 42 ? ARG A 36 GLU A 45 AA2 2 VAL A 48 ? ASN A 59 ? VAL A 51 ASN A 62 AA2 3 GLY A 99 ? ILE A 106 ? GLY A 102 ILE A 109 AA2 4 THR A 65 ? LYS A 66 ? THR A 68 LYS A 69 AA2 5 ASP A 137 ? ILE A 138 ? ASP A 140 ILE A 141 AA3 1 THR A 274 ? ILE A 276 ? THR A 277 ILE A 279 AA3 2 GLY A 245 ? TYR A 247 ? GLY A 248 TYR A 250 AA3 3 THR A 235 ? SER A 240 ? THR A 238 SER A 243 AA3 4 LYS A 211 ? GLN A 215 ? LYS A 214 GLN A 218 AA3 5 VAL A 288 ? PRO A 291 ? VAL A 291 PRO A 294 AA3 6 ILE A 310 ? ALA A 312 ? ILE A 313 ALA A 315 AA3 7 LEU A 333 ? ILE A 335 ? LEU A 336 ILE A 338 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 39 ? N VAL A 42 O PHE A 51 ? O PHE A 54 AA1 2 3 N VAL A 56 ? N VAL A 59 O LYS A 102 ? O LYS A 105 AA1 3 4 O ILE A 105 ? O ILE A 108 N ARG A 70 ? N ARG A 73 AA2 1 2 N VAL A 39 ? N VAL A 42 O PHE A 51 ? O PHE A 54 AA2 2 3 N VAL A 56 ? N VAL A 59 O LYS A 102 ? O LYS A 105 AA2 3 4 O GLY A 101 ? O GLY A 104 N LYS A 66 ? N LYS A 69 AA2 4 5 N THR A 65 ? N THR A 68 O ILE A 138 ? O ILE A 141 AA3 1 2 O THR A 274 ? O THR A 277 N TYR A 247 ? N TYR A 250 AA3 2 3 O ILE A 246 ? O ILE A 249 N VAL A 239 ? N VAL A 242 AA3 3 4 O ALA A 238 ? O ALA A 241 N VAL A 214 ? N VAL A 217 AA3 4 5 N ALA A 213 ? N ALA A 216 O ALA A 290 ? O ALA A 293 AA3 5 6 N LEU A 289 ? N LEU A 292 O ALA A 312 ? O ALA A 315 AA3 6 7 N VAL A 311 ? N VAL A 314 O ILE A 335 ? O ILE A 338 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 145 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -150.97 _pdbx_validate_torsion.psi -157.82 # _pdbx_entry_details.entry_id 8ZND _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8ZND _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8ZND _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.53 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 225530 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '0.5 mM NADP, 100 mM Glutamate in 5 mM Tris-HCl at pH7.5.' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Hexamer of W89F mutated glutamate dehydrogenase' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8ZND _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'JEOL CRYO ARM 300' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 350 _em_imaging.nominal_defocus_max 5000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details 'Both sides of the grid were glow-discharged for 45 s at 20 mA and 20 Pa.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8ZND _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 281 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'The sample solution was flash-frozen 2-h after mixing the protein solution and buffer solution.' # _em_experiment.entry_id 8ZND _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NDP PA P N S 250 NDP O1A O N N 251 NDP O2A O N N 252 NDP O5B O N N 253 NDP C5B C N N 254 NDP C4B C N R 255 NDP O4B O N N 256 NDP C3B C N R 257 NDP O3B O N N 258 NDP C2B C N R 259 NDP O2B O N N 260 NDP C1B C N R 261 NDP N9A N Y N 262 NDP C8A C Y N 263 NDP N7A N Y N 264 NDP C5A C Y N 265 NDP C6A C Y N 266 NDP N6A N N N 267 NDP N1A N Y N 268 NDP C2A C Y N 269 NDP N3A N Y N 270 NDP C4A C Y N 271 NDP O3 O N N 272 NDP PN P N S 273 NDP O1N O N N 274 NDP O2N O N N 275 NDP O5D O N N 276 NDP C5D C N N 277 NDP C4D C N R 278 NDP O4D O N N 279 NDP C3D C N S 280 NDP O3D O N N 281 NDP C2D C N R 282 NDP O2D O N N 283 NDP C1D C N R 284 NDP N1N N N N 285 NDP C2N C N N 286 NDP C3N C N N 287 NDP C7N C N N 288 NDP O7N O N N 289 NDP N7N N N N 290 NDP C4N C N N 291 NDP C5N C N N 292 NDP C6N C N N 293 NDP P2B P N N 294 NDP O1X O N N 295 NDP O2X O N N 296 NDP O3X O N N 297 NDP HOA2 H N N 298 NDP H51A H N N 299 NDP H52A H N N 300 NDP H4B H N N 301 NDP H3B H N N 302 NDP HO3A H N N 303 NDP H2B H N N 304 NDP H1B H N N 305 NDP H8A H N N 306 NDP H61A H N N 307 NDP H62A H N N 308 NDP H2A H N N 309 NDP H21N H N N 310 NDP H51N H N N 311 NDP H52N H N N 312 NDP H4D H N N 313 NDP H3D H N N 314 NDP HO3N H N N 315 NDP H2D H N N 316 NDP HO2N H N N 317 NDP H1D H N N 318 NDP H2N H N N 319 NDP H71N H N N 320 NDP H72N H N N 321 NDP H41N H N N 322 NDP H42N H N N 323 NDP H5N H N N 324 NDP H6N H N N 325 NDP HOP2 H N N 326 NDP HOP3 H N N 327 PHE N N N N 328 PHE CA C N S 329 PHE C C N N 330 PHE O O N N 331 PHE CB C N N 332 PHE CG C Y N 333 PHE CD1 C Y N 334 PHE CD2 C Y N 335 PHE CE1 C Y N 336 PHE CE2 C Y N 337 PHE CZ C Y N 338 PHE OXT O N N 339 PHE H H N N 340 PHE H2 H N N 341 PHE HA H N N 342 PHE HB2 H N N 343 PHE HB3 H N N 344 PHE HD1 H N N 345 PHE HD2 H N N 346 PHE HE1 H N N 347 PHE HE2 H N N 348 PHE HZ H N N 349 PHE HXT H N N 350 PRO N N N N 351 PRO CA C N S 352 PRO C C N N 353 PRO O O N N 354 PRO CB C N N 355 PRO CG C N N 356 PRO CD C N N 357 PRO OXT O N N 358 PRO H H N N 359 PRO HA H N N 360 PRO HB2 H N N 361 PRO HB3 H N N 362 PRO HG2 H N N 363 PRO HG3 H N N 364 PRO HD2 H N N 365 PRO HD3 H N N 366 PRO HXT H N N 367 SER N N N N 368 SER CA C N S 369 SER C C N N 370 SER O O N N 371 SER CB C N N 372 SER OG O N N 373 SER OXT O N N 374 SER H H N N 375 SER H2 H N N 376 SER HA H N N 377 SER HB2 H N N 378 SER HB3 H N N 379 SER HG H N N 380 SER HXT H N N 381 THR N N N N 382 THR CA C N S 383 THR C C N N 384 THR O O N N 385 THR CB C N R 386 THR OG1 O N N 387 THR CG2 C N N 388 THR OXT O N N 389 THR H H N N 390 THR H2 H N N 391 THR HA H N N 392 THR HB H N N 393 THR HG1 H N N 394 THR HG21 H N N 395 THR HG22 H N N 396 THR HG23 H N N 397 THR HXT H N N 398 TRP N N N N 399 TRP CA C N S 400 TRP C C N N 401 TRP O O N N 402 TRP CB C N N 403 TRP CG C Y N 404 TRP CD1 C Y N 405 TRP CD2 C Y N 406 TRP NE1 N Y N 407 TRP CE2 C Y N 408 TRP CE3 C Y N 409 TRP CZ2 C Y N 410 TRP CZ3 C Y N 411 TRP CH2 C Y N 412 TRP OXT O N N 413 TRP H H N N 414 TRP H2 H N N 415 TRP HA H N N 416 TRP HB2 H N N 417 TRP HB3 H N N 418 TRP HD1 H N N 419 TRP HE1 H N N 420 TRP HE3 H N N 421 TRP HZ2 H N N 422 TRP HZ3 H N N 423 TRP HH2 H N N 424 TRP HXT H N N 425 TYR N N N N 426 TYR CA C N S 427 TYR C C N N 428 TYR O O N N 429 TYR CB C N N 430 TYR CG C Y N 431 TYR CD1 C Y N 432 TYR CD2 C Y N 433 TYR CE1 C Y N 434 TYR CE2 C Y N 435 TYR CZ C Y N 436 TYR OH O N N 437 TYR OXT O N N 438 TYR H H N N 439 TYR H2 H N N 440 TYR HA H N N 441 TYR HB2 H N N 442 TYR HB3 H N N 443 TYR HD1 H N N 444 TYR HD2 H N N 445 TYR HE1 H N N 446 TYR HE2 H N N 447 TYR HH H N N 448 TYR HXT H N N 449 VAL N N N N 450 VAL CA C N S 451 VAL C C N N 452 VAL O O N N 453 VAL CB C N N 454 VAL CG1 C N N 455 VAL CG2 C N N 456 VAL OXT O N N 457 VAL H H N N 458 VAL H2 H N N 459 VAL HA H N N 460 VAL HB H N N 461 VAL HG11 H N N 462 VAL HG12 H N N 463 VAL HG13 H N N 464 VAL HG21 H N N 465 VAL HG22 H N N 466 VAL HG23 H N N 467 VAL HXT H N N 468 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NDP PA O1A doub N N 237 NDP PA O2A sing N N 238 NDP PA O5B sing N N 239 NDP PA O3 sing N N 240 NDP O2A HOA2 sing N N 241 NDP O5B C5B sing N N 242 NDP C5B C4B sing N N 243 NDP C5B H51A sing N N 244 NDP C5B H52A sing N N 245 NDP C4B O4B sing N N 246 NDP C4B C3B sing N N 247 NDP C4B H4B sing N N 248 NDP O4B C1B sing N N 249 NDP C3B O3B sing N N 250 NDP C3B C2B sing N N 251 NDP C3B H3B sing N N 252 NDP O3B HO3A sing N N 253 NDP C2B O2B sing N N 254 NDP C2B C1B sing N N 255 NDP C2B H2B sing N N 256 NDP O2B P2B sing N N 257 NDP C1B N9A sing N N 258 NDP C1B H1B sing N N 259 NDP N9A C8A sing Y N 260 NDP N9A C4A sing Y N 261 NDP C8A N7A doub Y N 262 NDP C8A H8A sing N N 263 NDP N7A C5A sing Y N 264 NDP C5A C6A sing Y N 265 NDP C5A C4A doub Y N 266 NDP C6A N6A sing N N 267 NDP C6A N1A doub Y N 268 NDP N6A H61A sing N N 269 NDP N6A H62A sing N N 270 NDP N1A C2A sing Y N 271 NDP C2A N3A doub Y N 272 NDP C2A H2A sing N N 273 NDP N3A C4A sing Y N 274 NDP O3 PN sing N N 275 NDP PN O1N doub N N 276 NDP PN O2N sing N N 277 NDP PN O5D sing N N 278 NDP O2N H21N sing N N 279 NDP O5D C5D sing N N 280 NDP C5D C4D sing N N 281 NDP C5D H51N sing N N 282 NDP C5D H52N sing N N 283 NDP C4D O4D sing N N 284 NDP C4D C3D sing N N 285 NDP C4D H4D sing N N 286 NDP O4D C1D sing N N 287 NDP C3D O3D sing N N 288 NDP C3D C2D sing N N 289 NDP C3D H3D sing N N 290 NDP O3D HO3N sing N N 291 NDP C2D O2D sing N N 292 NDP C2D C1D sing N N 293 NDP C2D H2D sing N N 294 NDP O2D HO2N sing N N 295 NDP C1D N1N sing N N 296 NDP C1D H1D sing N N 297 NDP N1N C2N sing N N 298 NDP N1N C6N sing N N 299 NDP C2N C3N doub N N 300 NDP C2N H2N sing N N 301 NDP C3N C7N sing N N 302 NDP C3N C4N sing N N 303 NDP C7N O7N doub N N 304 NDP C7N N7N sing N N 305 NDP N7N H71N sing N N 306 NDP N7N H72N sing N N 307 NDP C4N C5N sing N N 308 NDP C4N H41N sing N N 309 NDP C4N H42N sing N N 310 NDP C5N C6N doub N N 311 NDP C5N H5N sing N N 312 NDP C6N H6N sing N N 313 NDP P2B O1X doub N N 314 NDP P2B O2X sing N N 315 NDP P2B O3X sing N N 316 NDP O2X HOP2 sing N N 317 NDP O3X HOP3 sing N N 318 PHE N CA sing N N 319 PHE N H sing N N 320 PHE N H2 sing N N 321 PHE CA C sing N N 322 PHE CA CB sing N N 323 PHE CA HA sing N N 324 PHE C O doub N N 325 PHE C OXT sing N N 326 PHE CB CG sing N N 327 PHE CB HB2 sing N N 328 PHE CB HB3 sing N N 329 PHE CG CD1 doub Y N 330 PHE CG CD2 sing Y N 331 PHE CD1 CE1 sing Y N 332 PHE CD1 HD1 sing N N 333 PHE CD2 CE2 doub Y N 334 PHE CD2 HD2 sing N N 335 PHE CE1 CZ doub Y N 336 PHE CE1 HE1 sing N N 337 PHE CE2 CZ sing Y N 338 PHE CE2 HE2 sing N N 339 PHE CZ HZ sing N N 340 PHE OXT HXT sing N N 341 PRO N CA sing N N 342 PRO N CD sing N N 343 PRO N H sing N N 344 PRO CA C sing N N 345 PRO CA CB sing N N 346 PRO CA HA sing N N 347 PRO C O doub N N 348 PRO C OXT sing N N 349 PRO CB CG sing N N 350 PRO CB HB2 sing N N 351 PRO CB HB3 sing N N 352 PRO CG CD sing N N 353 PRO CG HG2 sing N N 354 PRO CG HG3 sing N N 355 PRO CD HD2 sing N N 356 PRO CD HD3 sing N N 357 PRO OXT HXT sing N N 358 SER N CA sing N N 359 SER N H sing N N 360 SER N H2 sing N N 361 SER CA C sing N N 362 SER CA CB sing N N 363 SER CA HA sing N N 364 SER C O doub N N 365 SER C OXT sing N N 366 SER CB OG sing N N 367 SER CB HB2 sing N N 368 SER CB HB3 sing N N 369 SER OG HG sing N N 370 SER OXT HXT sing N N 371 THR N CA sing N N 372 THR N H sing N N 373 THR N H2 sing N N 374 THR CA C sing N N 375 THR CA CB sing N N 376 THR CA HA sing N N 377 THR C O doub N N 378 THR C OXT sing N N 379 THR CB OG1 sing N N 380 THR CB CG2 sing N N 381 THR CB HB sing N N 382 THR OG1 HG1 sing N N 383 THR CG2 HG21 sing N N 384 THR CG2 HG22 sing N N 385 THR CG2 HG23 sing N N 386 THR OXT HXT sing N N 387 TRP N CA sing N N 388 TRP N H sing N N 389 TRP N H2 sing N N 390 TRP CA C sing N N 391 TRP CA CB sing N N 392 TRP CA HA sing N N 393 TRP C O doub N N 394 TRP C OXT sing N N 395 TRP CB CG sing N N 396 TRP CB HB2 sing N N 397 TRP CB HB3 sing N N 398 TRP CG CD1 doub Y N 399 TRP CG CD2 sing Y N 400 TRP CD1 NE1 sing Y N 401 TRP CD1 HD1 sing N N 402 TRP CD2 CE2 doub Y N 403 TRP CD2 CE3 sing Y N 404 TRP NE1 CE2 sing Y N 405 TRP NE1 HE1 sing N N 406 TRP CE2 CZ2 sing Y N 407 TRP CE3 CZ3 doub Y N 408 TRP CE3 HE3 sing N N 409 TRP CZ2 CH2 doub Y N 410 TRP CZ2 HZ2 sing N N 411 TRP CZ3 CH2 sing Y N 412 TRP CZ3 HZ3 sing N N 413 TRP CH2 HH2 sing N N 414 TRP OXT HXT sing N N 415 TYR N CA sing N N 416 TYR N H sing N N 417 TYR N H2 sing N N 418 TYR CA C sing N N 419 TYR CA CB sing N N 420 TYR CA HA sing N N 421 TYR C O doub N N 422 TYR C OXT sing N N 423 TYR CB CG sing N N 424 TYR CB HB2 sing N N 425 TYR CB HB3 sing N N 426 TYR CG CD1 doub Y N 427 TYR CG CD2 sing Y N 428 TYR CD1 CE1 sing Y N 429 TYR CD1 HD1 sing N N 430 TYR CD2 CE2 doub Y N 431 TYR CD2 HD2 sing N N 432 TYR CE1 CZ doub Y N 433 TYR CE1 HE1 sing N N 434 TYR CE2 CZ sing Y N 435 TYR CE2 HE2 sing N N 436 TYR CZ OH sing N N 437 TYR OH HH sing N N 438 TYR OXT HXT sing N N 439 VAL N CA sing N N 440 VAL N H sing N N 441 VAL N H2 sing N N 442 VAL CA C sing N N 443 VAL CA CB sing N N 444 VAL CA HA sing N N 445 VAL C O doub N N 446 VAL C OXT sing N N 447 VAL CB CG1 sing N N 448 VAL CB CG2 sing N N 449 VAL CB HB sing N N 450 VAL CG1 HG11 sing N N 451 VAL CG1 HG12 sing N N 452 VAL CG1 HG13 sing N N 453 VAL CG2 HG21 sing N N 454 VAL CG2 HG22 sing N N 455 VAL CG2 HG23 sing N N 456 VAL OXT HXT sing N N 457 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 0.5 mM C21H27N7NaO17P3 1 'Sodium Nicotiamide adenine dinucleotide phosphate' 1 100 mM C5H8NNaO4 2 'monosodium glutamate' 1 5 mM C4H11NO3 3 'tris(hydroxymethyl)aminomethane' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.280 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 49899 _em_entity_assembly_naturalsource.organism 'Thermococcus profundus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 7651 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 3534400 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4.0 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1.14 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? PHENIX ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4.0 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4.0 CLASSIFICATION ? 12 1 ? ? RELION 4.0 RECONSTRUCTION ? 13 1 ? ? RELION 4.0 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 9.0 _em_specimen.details '8.96 mg/mL GDH W89F' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan jp13480214 1 'Japan Society for the Promotion of Science (JSPS)' Japan jp19204042 2 'Japan Society for the Promotion of Science (JSPS)' Japan jp22244054 3 'Japan Society for the Promotion of Science (JSPS)' Japan jp21H01050 4 'Japan Society for the Promotion of Science (JSPS)' Japan jp26800227 5 'Japan Society for the Promotion of Science (JSPS)' Japan 18J11653 6 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp15076210 7 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp20050030 8 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp22018027 9 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp23120525 10 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp25120725 11 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp15H01647 12 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp17H05891 13 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NDP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NDP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8ZND _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_