HEADER HYDROLASE 29-MAY-24 8ZP6 TITLE CRYSTAL STRUCTURE OF EPOXIDE HYDROLASE MDEH (MYCOBACTERIUM TITLE 2 DIOXANOTROPHICUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AB HYDROLASE-1 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPOXIDE HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM DIOXANOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 482462; SOURCE 4 GENE: BTO20_37290; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPOXIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHOU,D.M.LAN,Y.H.WANG REVDAT 1 04-JUN-25 8ZP6 0 JRNL AUTH Y.ZHOU,D.M.LAN,Y.H.WANG JRNL TITL CRYSTAL STRUCTURE OF EPOXIDE HYDROLASE MDEH (MYCOBACTERIUM JRNL TITL 2 DIOXANOTROPHICUS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.233 REMARK 3 FREE R VALUE TEST SET COUNT : 1755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.9315 - 3.9169 1.00 4089 137 0.2086 0.2252 REMARK 3 2 3.9169 - 3.4226 1.00 4066 135 0.2152 0.2322 REMARK 3 3 3.4226 - 3.1100 1.00 4026 135 0.2312 0.2683 REMARK 3 4 3.1100 - 2.8872 1.00 4040 135 0.2488 0.2442 REMARK 3 5 2.8872 - 2.7171 1.00 4052 136 0.2612 0.3009 REMARK 3 6 2.7171 - 2.5811 1.00 4008 134 0.2727 0.2925 REMARK 3 7 2.5811 - 2.4688 1.00 4024 134 0.2685 0.2650 REMARK 3 8 2.4688 - 2.3738 1.00 4022 134 0.2665 0.2954 REMARK 3 9 2.3738 - 2.2919 1.00 4011 134 0.2729 0.2856 REMARK 3 10 2.2919 - 2.2203 1.00 4014 133 0.2758 0.2950 REMARK 3 11 2.2203 - 2.1568 1.00 4007 135 0.2653 0.3077 REMARK 3 12 2.1568 - 2.1001 1.00 3988 133 0.2724 0.2997 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.254 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.061 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2459 REMARK 3 ANGLE : 1.008 3357 REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ZP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 31.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 3350, AMMONIUM REMARK 280 SULFATE, BIS-TRIS, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 89.64500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.75656 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.45000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 89.64500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.75656 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.45000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 89.64500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.75656 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 50.45000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 89.64500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 51.75656 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.45000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 89.64500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 51.75656 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.45000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 89.64500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 51.75656 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.45000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 103.51313 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 100.90000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 103.51313 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 100.90000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 103.51313 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 100.90000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 103.51313 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.90000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 103.51313 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 100.90000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 103.51313 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 100.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 89.64500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 155.26969 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -89.64500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 155.26969 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -89.64500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 51.75656 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 50.45000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 207.02626 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 50.45000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 89.64500 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 51.75656 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 50.45000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -89.64500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 51.75656 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.45000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 652 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 600 O HOH A 647 1.90 REMARK 500 O HOH A 313 O HOH A 447 1.92 REMARK 500 O HOH A 563 O HOH A 638 1.94 REMARK 500 O HOH A 574 O HOH A 597 1.94 REMARK 500 O HOH A 505 O HOH A 605 1.98 REMARK 500 O HOH A 539 O HOH A 545 1.98 REMARK 500 OE2 GLU A 170 O HOH A 301 2.02 REMARK 500 O HOH A 554 O HOH A 595 2.02 REMARK 500 O HOH A 305 O HOH A 578 2.08 REMARK 500 OD2 ASP A 122 O HOH A 302 2.09 REMARK 500 O HOH A 588 O HOH A 651 2.10 REMARK 500 O HOH A 550 O HOH A 639 2.13 REMARK 500 O HOH A 583 O HOH A 660 2.16 REMARK 500 O HOH A 409 O HOH A 459 2.16 REMARK 500 O HOH A 583 O HOH A 638 2.16 REMARK 500 O HOH A 367 O HOH A 640 2.16 REMARK 500 O HOH A 573 O HOH A 591 2.18 REMARK 500 O HOH A 456 O HOH A 608 2.18 REMARK 500 O HOH A 517 O HOH A 605 2.19 REMARK 500 O HOH A 304 O HOH A 394 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 657 O HOH A 662 10455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 41 -167.20 -169.41 REMARK 500 ASP A 73 106.76 -20.78 REMARK 500 ASP A 107 -133.49 58.69 REMARK 500 ASN A 206 -0.72 71.44 REMARK 500 ARG A 231 37.91 -89.22 REMARK 500 PHE A 275 73.17 -113.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 669 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 670 DISTANCE = 6.98 ANGSTROMS DBREF1 8ZP6 A 1 293 UNP A0A1Y0CH10_9MYCO DBREF2 8ZP6 A A0A1Y0CH10 1 293 SEQRES 1 A 293 MET THR ILE ARG ARG PRO GLU HIS PHE THR HIS HIS GLU SEQRES 2 A 293 VAL GLN LEU SER ASP VAL LYS ILE HIS TYR VAL ARG GLU SEQRES 3 A 293 GLY ALA GLY PRO THR LEU LEU LEU LEU HIS GLY TRP PRO SEQRES 4 A 293 GLY PHE TRP TRP GLU TRP SER LYS VAL ILE GLY PRO LEU SEQRES 5 A 293 SER GLU ARG PHE ASP VAL ILE VAL PRO ASP LEU ARG GLY SEQRES 6 A 293 PHE GLY ASP SER GLU LYS PRO ASP LEU SER ASP LEU ALA SEQRES 7 A 293 GLN TYR SER LEU GLU ARG VAL ALA ASP ASP GLN ALA GLU SEQRES 8 A 293 LEU LEU ASN ALA LEU GLY ILE ASP GLN ALA TYR VAL VAL SEQRES 9 A 293 GLY HIS ASP TYR SER ALA ILE VAL VAL HIS LYS PHE ILE SEQRES 10 A 293 ARG LYS TYR PRO ASP ARG VAL VAL LYS ALA ALA ILE PHE SEQRES 11 A 293 ASP PRO ILE THR PRO ASP PHE GLY PRO PHE TYR LEU GLY SEQRES 12 A 293 PHE PRO HIS ILE ALA GLU SER TRP TYR SER GLN PHE HIS SEQRES 13 A 293 GLN THR ASP MET SER VAL GLU LEU VAL THR SER SER ARG SEQRES 14 A 293 GLU ALA CYS ARG ILE TYR PHE LYS HIS PHE PHE ASP HIS SEQRES 15 A 293 TRP SER TYR HIS ALA PRO LEU LEU THR GLN ASP GLU LEU SEQRES 16 A 293 ASP ILE TYR VAL ASP ASN CYS MET LYS PRO ASN ASN VAL SEQRES 17 A 293 HIS GLY GLY PHE ASN TYR TYR ARG SER ASN LEU SER VAL SEQRES 18 A 293 THR SER ASP PRO TRP THR ASP LEU ASP ARG THR VAL SER SEQRES 19 A 293 ASP LEU PRO VAL THR MET LEU TRP GLY VAL GLY ASP PRO SEQRES 20 A 293 VAL VAL PRO SER SER LEU VAL HIS GLN VAL PRO ASN TYR SEQRES 21 A 293 TYR SER ASN TYR THR MET GLU LEU ILE GLN ASP ALA GLY SEQRES 22 A 293 HIS PHE MET MET VAL GLU LYS PRO GLU VAL VAL ILE ASP SEQRES 23 A 293 ARG LEU LYS ALA GLY PHE ARG FORMUL 2 HOH *370(H2 O) HELIX 1 AA1 ARG A 5 PHE A 9 5 5 HELIX 2 AA2 PHE A 41 GLU A 44 5 4 HELIX 3 AA3 TRP A 45 SER A 53 1 9 HELIX 4 AA4 ASP A 76 TYR A 80 5 5 HELIX 5 AA5 SER A 81 LEU A 96 1 16 HELIX 6 AA6 ASP A 107 TYR A 120 1 14 HELIX 7 AA7 ASP A 136 LEU A 142 1 7 HELIX 8 AA8 HIS A 146 HIS A 156 1 11 HELIX 9 AA9 THR A 158 THR A 166 1 9 HELIX 10 AB1 SER A 168 TRP A 183 1 16 HELIX 11 AB2 THR A 191 MET A 203 1 13 HELIX 12 AB3 ASN A 206 LEU A 219 1 14 HELIX 13 AB4 ASP A 228 THR A 232 5 5 HELIX 14 AB5 PRO A 250 VAL A 257 5 8 HELIX 15 AB6 PHE A 275 LYS A 280 1 6 HELIX 16 AB7 LYS A 280 PHE A 292 1 13 SHEET 1 AA1 8 HIS A 11 GLN A 15 0 SHEET 2 AA1 8 LYS A 20 GLU A 26 -1 O TYR A 23 N HIS A 12 SHEET 3 AA1 8 ASP A 57 PRO A 61 -1 O VAL A 60 N VAL A 24 SHEET 4 AA1 8 THR A 31 LEU A 35 1 N LEU A 32 O ILE A 59 SHEET 5 AA1 8 ALA A 101 HIS A 106 1 O TYR A 102 N LEU A 33 SHEET 6 AA1 8 VAL A 124 PHE A 130 1 O ALA A 128 N VAL A 103 SHEET 7 AA1 8 VAL A 238 GLY A 243 1 O THR A 239 N ALA A 127 SHEET 8 AA1 8 TYR A 264 ILE A 269 1 O ILE A 269 N TRP A 242 CISPEP 1 TRP A 38 PRO A 39 0 6.58 CISPEP 2 PHE A 144 PRO A 145 0 5.35 CISPEP 3 ALA A 187 PRO A 188 0 2.29 CRYST1 179.290 179.290 151.350 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005578 0.003220 0.000000 0.00000 SCALE2 0.000000 0.006440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006607 0.00000 MASTER 394 0 0 16 8 0 0 6 2749 1 0 23 END