HEADER IMMUNE SYSTEM 31-MAY-24 8ZPU TITLE CRYSTAL STRUCTURE OF THE ANTI-PHOSPHORYLATED PEPTIDE C7 SCFV ANTIBODY TITLE 2 WITH PEPTIDE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHE-PRO-GLN-PHE-SEP-TYR-SER; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_TAXID: 9986; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS PHOSPHORYLATED PEPTIDE, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,R.KAWADE,K.TSUMOTO REVDAT 1 11-DEC-24 8ZPU 0 JRNL AUTH K.KASAHARA,R.KAWADE,M.NAKAKIDO,R.MATSUNAGA,H.AKIBA, JRNL AUTH 2 K.C.ENTZMINGER,T.MARUYAMA,S.C.J.OKUMURA,J.M.M.CAAVEIRO, JRNL AUTH 3 D.KURODA,K.TSUMOTO JRNL TITL ORIGIN OF HIGH BINDING AFFINITY AND SELECTIVITY OF JRNL TITL 2 PHOSPHORYLATED EPITOPE-SPECIFIC RABBIT ANTIBODIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.304 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.364 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.77800 REMARK 3 B12 (A**2) : -0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.464 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.423 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.838 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.785 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3711 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3304 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5065 ; 1.371 ; 1.776 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7605 ; 0.491 ; 1.725 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 7.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;10.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 545 ;14.371 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 577 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4402 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 882 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 574 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 50 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1785 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 1.919 ; 2.791 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1910 ; 1.918 ; 2.791 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2377 ; 3.171 ; 5.003 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2378 ; 3.171 ; 5.004 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 2.092 ; 3.017 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1778 ; 1.976 ; 2.981 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2688 ; 3.344 ; 5.485 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2653 ; 3.264 ; 5.426 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 248 NULL REMARK 3 1 A 1 A 248 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4344 -19.0851 -2.5552 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.0904 REMARK 3 T33: 0.0662 T12: 0.0770 REMARK 3 T13: 0.0239 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.6465 L22: 2.2570 REMARK 3 L33: 2.4907 L12: 1.4123 REMARK 3 L13: 0.0919 L23: -0.2485 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.1607 S13: 0.2409 REMARK 3 S21: 0.3248 S22: -0.0622 S23: 0.0370 REMARK 3 S31: -0.0354 S32: -0.0869 S33: 0.1043 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 54.2340 -10.9793 13.8784 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1770 REMARK 3 T33: 0.2030 T12: 0.0044 REMARK 3 T13: -0.0277 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 4.6832 L22: 15.9471 REMARK 3 L33: 3.7874 L12: -0.5259 REMARK 3 L13: 2.0839 L23: -2.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.6150 S13: -0.0330 REMARK 3 S21: -0.2348 S22: -0.0828 S23: -0.3820 REMARK 3 S31: -0.2051 S32: -0.3296 S33: 0.1539 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 53.9355 -17.3903 -35.5603 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0257 REMARK 3 T33: 0.0422 T12: 0.0064 REMARK 3 T13: 0.0085 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.1442 L22: 2.5899 REMARK 3 L33: 1.9846 L12: 1.3415 REMARK 3 L13: -0.0237 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: 0.1987 S13: 0.1363 REMARK 3 S21: -0.2928 S22: -0.0070 S23: 0.2115 REMARK 3 S31: 0.0527 S32: -0.1352 S33: 0.0982 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 45.3363 -17.2336 -52.9331 REMARK 3 T TENSOR REMARK 3 T11: 0.2861 T22: 0.1454 REMARK 3 T33: 0.2121 T12: -0.0255 REMARK 3 T13: -0.0998 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 16.1560 L22: 7.5090 REMARK 3 L33: 1.1622 L12: -4.2357 REMARK 3 L13: -2.6614 L23: -1.4487 REMARK 3 S TENSOR REMARK 3 S11: -0.3234 S12: 0.5189 S13: 0.2015 REMARK 3 S21: -0.3973 S22: 0.3789 S23: 0.0913 REMARK 3 S31: 0.1911 S32: -0.2604 S33: -0.0555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8ZPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.4.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 21.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 30% REMARK 280 POLYETHYLENE GLYCOL 4000, 20 MM TRIS HCL, 20 MM NACL, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.90667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.45333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.45333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.90667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 GLY A 249 REMARK 465 ARG A 250 REMARK 465 GLY A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 ARG C 1 REMARK 465 PRO C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 11 REMARK 465 SER C 12 REMARK 465 LEU B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 GLY B 249 REMARK 465 ARG B 250 REMARK 465 GLY B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 ARG D 1 REMARK 465 PRO D 2 REMARK 465 ALA D 11 REMARK 465 SER D 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 42 -168.75 -110.72 REMARK 500 THR A 71 -169.64 -116.51 REMARK 500 GLN A 161 141.76 -171.84 REMARK 500 ASN A 165 -0.23 76.29 REMARK 500 ASN A 166 -12.60 85.05 REMARK 500 ALA A 187 -44.88 90.72 REMARK 500 LYS B 42 -168.49 -111.47 REMARK 500 THR B 71 -169.34 -116.67 REMARK 500 ASN B 165 -2.34 75.12 REMARK 500 ASN B 166 -8.14 81.53 REMARK 500 LYS B 167 11.22 -148.05 REMARK 500 ALA B 187 -42.82 89.69 REMARK 500 ALA B 191 -162.09 -59.69 REMARK 500 ALA B 233 -179.59 -177.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 70 THR A 71 149.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 9 0.09 SIDE CHAIN REMARK 500 ARG B 197 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8ZPU A 1 257 PDB 8ZPU 8ZPU 1 257 DBREF 8ZPU C 1 12 PDB 8ZPU 8ZPU 1 12 DBREF 8ZPU B 1 257 PDB 8ZPU 8ZPU 1 257 DBREF 8ZPU D 1 12 PDB 8ZPU 8ZPU 1 12 SEQRES 1 A 257 GLN SER LEU GLU GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 2 A 257 GLY THR PRO LEU THR LEU THR CYS THR VAL SER GLY PHE SEQRES 3 A 257 SER LEU ASN ASN ASN ALA MET THR TRP VAL ARG GLN ALA SEQRES 4 A 257 PRO GLY LYS GLY LEU GLU TRP ILE GLY LEU ILE SER ARG SEQRES 5 A 257 SER GLY ILE THR HIS TYR ALA ASN TRP ALA LYS GLY ARG SEQRES 6 A 257 PHE THR ILE SER LYS THR SER THR THR VAL ASP LEU LYS SEQRES 7 A 257 ILE THR THR SER THR THR GLU ASP THR ALA THR TYR PHE SEQRES 8 A 257 CYS ALA ARG VAL ASP TYR ASP ASP TYR ARG ASP TRP GLY SEQRES 9 A 257 SER PHE ASN VAL TRP GLY PRO GLY THR LEU VAL THR VAL SEQRES 10 A 257 SER LEU GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 A 257 GLY GLY GLY SER ALA ALA VAL LEU THR GLN THR PRO SER SEQRES 12 A 257 SER VAL SER SER ALA VAL GLY GLY THR VAL THR ILE ASN SEQRES 13 A 257 CYS GLN ALA SER GLN SER LEU TYR ASN ASN LYS ASN LEU SEQRES 14 A 257 ALA TRP TYR GLN GLN LYS PRO GLY GLN ARG PRO LYS LEU SEQRES 15 A 257 LEU ILE TYR SER ALA SER THR LEU ALA SER GLY VAL PRO SEQRES 16 A 257 SER ARG PHE SER GLY SER GLY SER GLY THR GLN PHE THR SEQRES 17 A 257 LEU THR ILE ASN GLY VAL GLN SER ASP ASP ALA ALA THR SEQRES 18 A 257 TYR TYR CYS GLN GLY GLU PHE SER CYS SER SER ALA ASP SEQRES 19 A 257 CYS ASN ALA PHE GLY GLY GLY THR GLU VAL VAL VAL LYS SEQRES 20 A 257 GLY GLY ARG GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 12 ARG PRO HIS PHE PRO GLN PHE SEP TYR SER ALA SER SEQRES 1 B 257 GLN SER LEU GLU GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 2 B 257 GLY THR PRO LEU THR LEU THR CYS THR VAL SER GLY PHE SEQRES 3 B 257 SER LEU ASN ASN ASN ALA MET THR TRP VAL ARG GLN ALA SEQRES 4 B 257 PRO GLY LYS GLY LEU GLU TRP ILE GLY LEU ILE SER ARG SEQRES 5 B 257 SER GLY ILE THR HIS TYR ALA ASN TRP ALA LYS GLY ARG SEQRES 6 B 257 PHE THR ILE SER LYS THR SER THR THR VAL ASP LEU LYS SEQRES 7 B 257 ILE THR THR SER THR THR GLU ASP THR ALA THR TYR PHE SEQRES 8 B 257 CYS ALA ARG VAL ASP TYR ASP ASP TYR ARG ASP TRP GLY SEQRES 9 B 257 SER PHE ASN VAL TRP GLY PRO GLY THR LEU VAL THR VAL SEQRES 10 B 257 SER LEU GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 B 257 GLY GLY GLY SER ALA ALA VAL LEU THR GLN THR PRO SER SEQRES 12 B 257 SER VAL SER SER ALA VAL GLY GLY THR VAL THR ILE ASN SEQRES 13 B 257 CYS GLN ALA SER GLN SER LEU TYR ASN ASN LYS ASN LEU SEQRES 14 B 257 ALA TRP TYR GLN GLN LYS PRO GLY GLN ARG PRO LYS LEU SEQRES 15 B 257 LEU ILE TYR SER ALA SER THR LEU ALA SER GLY VAL PRO SEQRES 16 B 257 SER ARG PHE SER GLY SER GLY SER GLY THR GLN PHE THR SEQRES 17 B 257 LEU THR ILE ASN GLY VAL GLN SER ASP ASP ALA ALA THR SEQRES 18 B 257 TYR TYR CYS GLN GLY GLU PHE SER CYS SER SER ALA ASP SEQRES 19 B 257 CYS ASN ALA PHE GLY GLY GLY THR GLU VAL VAL VAL LYS SEQRES 20 B 257 GLY GLY ARG GLY HIS HIS HIS HIS HIS HIS SEQRES 1 D 12 ARG PRO HIS PHE PRO GLN PHE SEP TYR SER ALA SER HET SEP C 8 10 HET SEP D 8 10 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET CL A 304 1 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET CL B 304 1 HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 5 SO4 6(O4 S 2-) FORMUL 8 CL 2(CL 1-) FORMUL 13 HOH *14(H2 O) HELIX 1 AA1 THR A 83 THR A 87 5 5 HELIX 2 AA2 LEU A 163 LYS A 167 5 5 HELIX 3 AA3 GLN A 215 ALA A 219 5 5 HELIX 4 AA4 SER A 229 ALA A 233 5 5 HELIX 5 AA5 PRO C 5 TYR C 9 5 5 HELIX 6 AA6 SER B 27 ASN B 31 5 5 HELIX 7 AA7 THR B 83 THR B 87 5 5 HELIX 8 AA8 LEU B 163 LYS B 167 5 5 HELIX 9 AA9 GLN B 215 ALA B 219 5 5 HELIX 10 AB1 SER B 229 ALA B 233 5 5 HELIX 11 AB2 PRO D 5 TYR D 9 5 5 SHEET 1 AA1 4 SER A 2 GLU A 5 0 SHEET 2 AA1 4 LEU A 17 SER A 24 -1 O THR A 22 N GLU A 4 SHEET 3 AA1 4 THR A 74 ILE A 79 -1 O ILE A 79 N LEU A 17 SHEET 4 AA1 4 PHE A 66 LYS A 70 -1 N SER A 69 O ASP A 76 SHEET 1 AA2 6 ARG A 9 VAL A 11 0 SHEET 2 AA2 6 THR A 113 VAL A 117 1 O THR A 116 N ARG A 9 SHEET 3 AA2 6 ALA A 88 TYR A 97 -1 N ALA A 88 O VAL A 115 SHEET 4 AA2 6 ALA A 32 GLN A 38 -1 N ALA A 32 O VAL A 95 SHEET 5 AA2 6 GLU A 45 ILE A 50 -1 O ILE A 50 N MET A 33 SHEET 6 AA2 6 THR A 56 TYR A 58 -1 O HIS A 57 N LEU A 49 SHEET 1 AA3 4 ARG A 9 VAL A 11 0 SHEET 2 AA3 4 THR A 113 VAL A 117 1 O THR A 116 N ARG A 9 SHEET 3 AA3 4 ALA A 88 TYR A 97 -1 N ALA A 88 O VAL A 115 SHEET 4 AA3 4 ASP A 102 TRP A 109 -1 O SER A 105 N ASP A 96 SHEET 1 AA4 4 LEU A 138 THR A 141 0 SHEET 2 AA4 4 THR A 152 ALA A 159 -1 O ASN A 156 N THR A 141 SHEET 3 AA4 4 GLN A 206 ASN A 212 -1 O PHE A 207 N CYS A 157 SHEET 4 AA4 4 PHE A 198 SER A 203 -1 N SER A 199 O THR A 210 SHEET 1 AA5 6 SER A 144 ALA A 148 0 SHEET 2 AA5 6 THR A 242 LYS A 247 1 O GLU A 243 N VAL A 145 SHEET 3 AA5 6 ALA A 220 GLU A 227 -1 N ALA A 220 O VAL A 244 SHEET 4 AA5 6 LEU A 169 GLN A 174 -1 N ALA A 170 O GLN A 225 SHEET 5 AA5 6 LYS A 181 TYR A 185 -1 O LYS A 181 N GLN A 173 SHEET 6 AA5 6 THR A 189 LEU A 190 -1 O THR A 189 N TYR A 185 SHEET 1 AA6 4 SER A 144 ALA A 148 0 SHEET 2 AA6 4 THR A 242 LYS A 247 1 O GLU A 243 N VAL A 145 SHEET 3 AA6 4 ALA A 220 GLU A 227 -1 N ALA A 220 O VAL A 244 SHEET 4 AA6 4 ASN A 236 PHE A 238 -1 O ALA A 237 N GLY A 226 SHEET 1 AA7 4 SER B 2 GLU B 5 0 SHEET 2 AA7 4 LEU B 17 SER B 24 -1 O THR B 22 N GLU B 4 SHEET 3 AA7 4 THR B 74 ILE B 79 -1 O ILE B 79 N LEU B 17 SHEET 4 AA7 4 PHE B 66 LYS B 70 -1 N SER B 69 O ASP B 76 SHEET 1 AA8 6 ARG B 9 VAL B 11 0 SHEET 2 AA8 6 THR B 113 VAL B 117 1 O LEU B 114 N ARG B 9 SHEET 3 AA8 6 ALA B 88 TYR B 97 -1 N ALA B 88 O VAL B 115 SHEET 4 AA8 6 ALA B 32 GLN B 38 -1 N ALA B 32 O VAL B 95 SHEET 5 AA8 6 GLU B 45 ILE B 50 -1 O ILE B 50 N MET B 33 SHEET 6 AA8 6 THR B 56 TYR B 58 -1 O HIS B 57 N LEU B 49 SHEET 1 AA9 4 ARG B 9 VAL B 11 0 SHEET 2 AA9 4 THR B 113 VAL B 117 1 O LEU B 114 N ARG B 9 SHEET 3 AA9 4 ALA B 88 TYR B 97 -1 N ALA B 88 O VAL B 115 SHEET 4 AA9 4 ASP B 102 TRP B 109 -1 O SER B 105 N ASP B 96 SHEET 1 AB1 4 LEU B 138 THR B 141 0 SHEET 2 AB1 4 THR B 152 ALA B 159 -1 O ASN B 156 N THR B 141 SHEET 3 AB1 4 GLN B 206 ASN B 212 -1 O LEU B 209 N ILE B 155 SHEET 4 AB1 4 PHE B 198 SER B 203 -1 N SER B 199 O THR B 210 SHEET 1 AB2 6 SER B 144 ALA B 148 0 SHEET 2 AB2 6 THR B 242 LYS B 247 1 O LYS B 247 N SER B 147 SHEET 3 AB2 6 ALA B 220 GLU B 227 -1 N ALA B 220 O VAL B 244 SHEET 4 AB2 6 LEU B 169 GLN B 174 -1 N ALA B 170 O GLN B 225 SHEET 5 AB2 6 LYS B 181 TYR B 185 -1 O LYS B 181 N GLN B 173 SHEET 6 AB2 6 THR B 189 LEU B 190 -1 O THR B 189 N TYR B 185 SHEET 1 AB3 4 SER B 144 ALA B 148 0 SHEET 2 AB3 4 THR B 242 LYS B 247 1 O LYS B 247 N SER B 147 SHEET 3 AB3 4 ALA B 220 GLU B 227 -1 N ALA B 220 O VAL B 244 SHEET 4 AB3 4 ASN B 236 PHE B 238 -1 O ALA B 237 N GLY B 226 SSBOND 1 CYS A 21 CYS A 92 1555 1555 2.06 SSBOND 2 CYS A 157 CYS A 224 1555 1555 2.11 SSBOND 3 CYS A 230 CYS A 235 1555 1555 2.01 SSBOND 4 CYS B 21 CYS B 92 1555 1555 2.04 SSBOND 5 CYS B 157 CYS B 224 1555 1555 2.01 SSBOND 6 CYS B 230 CYS B 235 1555 1555 2.03 LINK C PHE C 7 N SEP C 8 1555 1555 1.34 LINK C SEP C 8 N TYR C 9 1555 1555 1.35 LINK C PHE D 7 N SEP D 8 1555 1555 1.34 LINK C SEP D 8 N TYR D 9 1555 1555 1.35 CISPEP 1 THR A 141 PRO A 142 0 3.74 CISPEP 2 PHE C 4 PRO C 5 0 -11.58 CISPEP 3 THR B 141 PRO B 142 0 -1.13 CISPEP 4 PHE D 4 PRO D 5 0 -16.66 CRYST1 126.610 126.610 82.360 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007898 0.004560 0.000000 0.00000 SCALE2 0.000000 0.009120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012142 0.00000