HEADER PEPTIDE BINDING PROTEIN 31-MAY-24 8ZPW TITLE CRYO-EM STRUCTURE OF THE YEAST HTM1/PDI1 COMPLEX AT A RESOLUTION OF TITLE 2 3.0 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.24; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN DISULFIDE-ISOMERASE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PDI,THIOREDOXIN-RELATED GLYCOPROTEIN 1; COMPND 10 EC: 5.3.4.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MNL1, HTM1, YHR204W; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: PDI1, MFP1, TRG1, YCL043C, YCL313, YCL43C; SOURCE 13 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS COMPLEX, CARBOHYDRATE CLEAVAGE, PEPTIDE BINDING, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.W.WU,D.ZHAO,T.A.RAPOPORT REVDAT 3 02-JUL-25 8ZPW 1 REMARK REVDAT 2 27-NOV-24 8ZPW 1 REMARK REVDAT 1 13-NOV-24 8ZPW 0 JRNL AUTH D.ZHAO,X.WU,T.A.RAPOPORT JRNL TITL INITIATION OF ERAD BY THE BIFUNCTIONAL COMPLEX OF MNL1 JRNL TITL 2 MANNOSIDASE AND PROTEIN DISULFIDE ISOMERASE. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 39464000 JRNL DOI 10.1101/2024.10.17.618908 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 313324 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ZPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048325. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : A COMPLEX OF YEAST HTM1/PDI1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 7000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 CYS A 3 REMARK 465 CYS A 4 REMARK 465 LEU A 5 REMARK 465 TRP A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 HIS A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 CYS A 20 REMARK 465 GLU A 21 REMARK 465 ASP A 22 REMARK 465 LYS A 197 REMARK 465 TRP A 198 REMARK 465 ASP A 199 REMARK 465 VAL A 200 REMARK 465 SER A 201 REMARK 465 GLU A 202 REMARK 465 PHE A 203 REMARK 465 PRO A 204 REMARK 465 GLU A 205 REMARK 465 PHE A 206 REMARK 465 LEU A 207 REMARK 465 GLU A 208 REMARK 465 PRO A 379 REMARK 465 GLU A 380 REMARK 465 PHE A 381 REMARK 465 PRO A 382 REMARK 465 PRO A 383 REMARK 465 LEU A 384 REMARK 465 SER A 385 REMARK 465 PRO A 386 REMARK 465 LEU A 387 REMARK 465 GLU A 388 REMARK 465 ARG A 389 REMARK 465 SER A 390 REMARK 465 GLY A 391 REMARK 465 ALA A 392 REMARK 465 VAL A 393 REMARK 465 ALA A 394 REMARK 465 LEU A 395 REMARK 465 ASN A 517 REMARK 465 ASN A 518 REMARK 465 SER A 519 REMARK 465 VAL A 520 REMARK 465 TYR A 521 REMARK 465 SER A 522 REMARK 465 SER A 523 REMARK 465 HIS A 524 REMARK 465 LEU A 525 REMARK 465 GLU A 526 REMARK 465 ILE A 527 REMARK 465 CYS A 528 REMARK 465 GLN A 529 REMARK 465 LYS A 530 REMARK 465 LYS A 531 REMARK 465 ASP A 532 REMARK 465 ARG A 533 REMARK 465 GLU A 534 REMARK 465 GLN A 535 REMARK 465 ALA A 536 REMARK 465 GLY A 537 REMARK 465 GLU A 538 REMARK 465 ASN A 539 REMARK 465 THR A 540 REMARK 465 LEU A 541 REMARK 465 SER A 542 REMARK 465 GLN A 543 REMARK 465 ARG A 544 REMARK 465 ILE A 545 REMARK 465 VAL A 546 REMARK 465 GLY A 547 REMARK 465 PHE A 548 REMARK 465 ALA A 549 REMARK 465 LYS A 550 REMARK 465 SER A 551 REMARK 465 ILE A 552 REMARK 465 PHE A 553 REMARK 465 HIS A 554 REMARK 465 LYS A 555 REMARK 465 GLY A 556 REMARK 465 PRO A 557 REMARK 465 PRO A 558 REMARK 465 ASP A 559 REMARK 465 GLU A 560 REMARK 465 GLU A 561 REMARK 465 ALA A 562 REMARK 465 THR A 563 REMARK 465 ASP A 564 REMARK 465 PRO A 565 REMARK 465 ILE A 566 REMARK 465 ILE A 567 REMARK 465 ASP A 568 REMARK 465 TYR A 569 REMARK 465 THR A 570 REMARK 465 ILE A 571 REMARK 465 ASP A 572 REMARK 465 THR A 573 REMARK 465 GLU A 574 REMARK 465 GLU A 671 REMARK 465 ASN A 672 REMARK 465 LEU A 727 REMARK 465 TYR A 728 REMARK 465 SER A 729 REMARK 465 SER A 756 REMARK 465 PRO A 757 REMARK 465 VAL A 758 REMARK 465 LEU A 759 REMARK 465 THR A 760 REMARK 465 SER A 761 REMARK 465 ASN A 762 REMARK 465 GLY A 763 REMARK 465 THR A 764 REMARK 465 ARG A 765 REMARK 465 GLU A 766 REMARK 465 GLU A 767 REMARK 465 ASP A 768 REMARK 465 GLU A 769 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PHE B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 TRP B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 LEU B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 VAL B 20 REMARK 465 PHE B 21 REMARK 465 ALA B 22 REMARK 465 GLN B 23 REMARK 465 ALA B 501 REMARK 465 ALA B 502 REMARK 465 GLU B 503 REMARK 465 GLU B 504 REMARK 465 ALA B 505 REMARK 465 ASP B 506 REMARK 465 ALA B 507 REMARK 465 ASP B 508 REMARK 465 ALA B 509 REMARK 465 GLU B 510 REMARK 465 LEU B 511 REMARK 465 ALA B 512 REMARK 465 ASP B 513 REMARK 465 GLU B 514 REMARK 465 GLU B 515 REMARK 465 ASP B 516 REMARK 465 ALA B 517 REMARK 465 ILE B 518 REMARK 465 HIS B 519 REMARK 465 ASP B 520 REMARK 465 GLU B 521 REMARK 465 LEU B 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 338 OG SER A 413 2.04 REMARK 500 O ARG A 137 OG SER A 141 2.04 REMARK 500 NH1 ARG A 635 O LYS B 297 2.07 REMARK 500 OE1 GLU A 236 OH TYR A 510 2.10 REMARK 500 OD1 ASP A 74 OG1 THR A 76 2.12 REMARK 500 OH TYR B 467 OG SER B 475 2.14 REMARK 500 OD1 ASP B 89 OG1 THR B 91 2.16 REMARK 500 OD1 ASN B 82 O3 NAG B 602 2.18 REMARK 500 OD1 ASP B 396 N GLY B 458 2.19 REMARK 500 O LEU B 398 OH TYR B 416 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 137 -65.59 -90.84 REMARK 500 SER A 277 -9.15 78.84 REMARK 500 ASN A 397 -8.20 73.57 REMARK 500 LEU A 406 42.02 71.70 REMARK 500 ASP A 658 53.09 -91.96 REMARK 500 SER A 781 31.20 71.97 REMARK 500 ALA B 26 -3.63 74.05 REMARK 500 GLN B 165 76.08 -100.66 REMARK 500 THR B 427 -10.97 74.99 REMARK 500 SER B 428 24.41 48.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 495 O REMARK 620 2 THR A 495 OG1 66.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60365 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE YEAST HTM1/PDI1 COMPLEX AT A RESOLUTION OF REMARK 900 3.0 ANGSTROM DBREF 8ZPW A 1 796 UNP P38888 MNL1_YEAST 1 796 DBREF 8ZPW B 1 522 UNP P17967 PDI_YEAST 1 522 SEQRES 1 A 796 MET VAL CYS CYS LEU TRP VAL LEU LEU ALA LEU LEU LEU SEQRES 2 A 796 HIS LEU ASP HIS VAL ALA CYS GLU ASP ASP ALA TYR SER SEQRES 3 A 796 PHE THR SER LYS GLU LEU LYS ALA TYR LYS GLN GLU VAL SEQRES 4 A 796 LYS GLU LEU PHE TYR PHE GLY PHE ASP ASN TYR LEU GLU SEQRES 5 A 796 HIS GLY TYR PRO TYR ASP GLU VAL LYS PRO ILE SER CYS SEQRES 6 A 796 VAL PRO LYS LYS ARG ASN PHE GLU ASP PRO THR ASP GLN SEQRES 7 A 796 GLY THR ASN ASP ILE LEU GLY ASN PHE THR ILE THR LEU SEQRES 8 A 796 ILE ASP SER LEU THR THR ILE ALA ILE LEU GLU ASP ARG SEQRES 9 A 796 PRO GLN PHE LEU LYS ALA VAL ARG LEU VAL GLU ARG THR SEQRES 10 A 796 PHE PRO ASP GLY ASN PHE ASP ILE ASP SER THR ILE GLN SEQRES 11 A 796 VAL PHE GLU ILE THR ILE ARG VAL ILE GLY SER LEU LEU SEQRES 12 A 796 SER SER HIS LEU TYR ALA THR ASP PRO THR LYS ALA VAL SEQRES 13 A 796 TYR LEU GLY ASP ASP TYR ASP GLY SER LEU LEU ARG LEU SEQRES 14 A 796 ALA GLN ASN MET ALA ASP ARG LEU LEU PRO ALA TYR LEU SEQRES 15 A 796 THR SER THR GLY LEU PRO MET PRO ARG ARG ASN ILE LYS SEQRES 16 A 796 ARG LYS TRP ASP VAL SER GLU PHE PRO GLU PHE LEU GLU SEQRES 17 A 796 THR GLU ASN ASN VAL ALA ALA MET ALA SER PRO MET PHE SEQRES 18 A 796 GLU PHE THR ILE LEU SER TYR LEU THR GLY ASP PRO LYS SEQRES 19 A 796 TYR GLU LYS VAL THR ARG TYR ALA PHE ASP LYS THR TRP SEQRES 20 A 796 SER LEU ARG THR GLY LEU ASP LEU LEU PRO MET SER PHE SEQRES 21 A 796 HIS PRO GLU LYS LEU THR PRO TYR THR PRO MET THR GLY SEQRES 22 A 796 ILE GLY ALA SER ILE ASP SER LEU PHE GLU TYR ALA LEU SEQRES 23 A 796 LYS GLY ALA ILE LEU PHE ASP ASP SER GLU LEU MET GLU SEQRES 24 A 796 VAL TRP ASN VAL ALA TYR GLU ALA LEU LYS THR ASN CYS SEQRES 25 A 796 LYS ASN ASP TRP PHE PHE ALA ASN VAL MET ALA ASP THR SEQRES 26 A 796 GLY HIS LEU PHE VAL PRO TRP ILE ASP SER LEU SER ALA SEQRES 27 A 796 PHE PHE SER GLY LEU GLN VAL LEU ALA GLY ASP LEU ASP SEQRES 28 A 796 ASP ALA ILE ALA ASN HIS LEU MET PHE LEU LYS MET TRP SEQRES 29 A 796 ASN THR PHE GLY GLY ILE PRO GLU ARG TRP ASN PHE SER SEQRES 30 A 796 PRO PRO GLU PHE PRO PRO LEU SER PRO LEU GLU ARG SER SEQRES 31 A 796 GLY ALA VAL ALA LEU ASP ASN ILE LEU PRO LEU GLU TRP SEQRES 32 A 796 TYR PRO LEU ARG PRO GLU PHE PHE GLU SER THR TYR PHE SEQRES 33 A 796 LEU TYR ARG ALA THR LYS ASP PRO PHE TYR LEU ASN ILE SEQRES 34 A 796 GLY VAL HIS LEU LEU LYS ASP LEU LYS GLN ARG PHE LYS SEQRES 35 A 796 SER ASN CYS GLY PHE ALA GLY PHE GLN ASN VAL ILE THR SEQRES 36 A 796 GLY GLU LEU GLN ASP ARG MET GLU THR PHE VAL LEU SER SEQRES 37 A 796 GLU THR LEU LYS TYR LEU TYR LEU LEU PHE ASP GLU GLU SEQRES 38 A 796 ASN GLU LEU HIS ASN SER ALA SER ASP VAL ILE PHE SER SEQRES 39 A 796 THR GLU ALA HIS PRO MET TRP LEU PRO GLN GLU VAL ARG SEQRES 40 A 796 SER ASN TYR LYS ARG ASN ALA LYS PHE ASN ASN SER VAL SEQRES 41 A 796 TYR SER SER HIS LEU GLU ILE CYS GLN LYS LYS ASP ARG SEQRES 42 A 796 GLU GLN ALA GLY GLU ASN THR LEU SER GLN ARG ILE VAL SEQRES 43 A 796 GLY PHE ALA LYS SER ILE PHE HIS LYS GLY PRO PRO ASP SEQRES 44 A 796 GLU GLU ALA THR ASP PRO ILE ILE ASP TYR THR ILE ASP SEQRES 45 A 796 THR GLU LEU PRO GLY THR CYS SER ILE LYS PRO HIS HIS SEQRES 46 A 796 VAL ILE GLY ASP GLU PHE TRP TYR SER PRO MET LEU SER SEQRES 47 A 796 ASN PHE ASP ARG LEU PHE GLU ILE ASP SER ARG PHE ALA SEQRES 48 A 796 ALA THR LEU ILE LYS PRO SER HIS MET HIS ASN TYR ASN SEQRES 49 A 796 ALA ILE GLU LEU GLU PRO GLY PHE TYR ASN ARG TRP SER SEQRES 50 A 796 ASN PRO GLN PHE SER THR CYS LEU ILE PRO PRO THR THR SEQRES 51 A 796 GLU ILE PHE GLU LEU LEU PHE ASP LEU PRO GLY TYR HIS SEQRES 52 A 796 GLN LEU ASN PRO LEU MET LEU GLU ASN LYS THR ILE THR SEQRES 53 A 796 PHE GLU THR PHE GLY GLY ARG SER ARG LEU LYS ILE GLU SEQRES 54 A 796 LYS LEU GLN ILE TYR GLN ILE ASP TYR TYR GLY ASP LEU SEQRES 55 A 796 ILE THR ALA SER THR PHE GLN ASP VAL SER ARG LYS ASP SEQRES 56 A 796 ILE PHE SER ASN ALA CYS ASP ALA VAL ALA SER LEU TYR SEQRES 57 A 796 SER PRO THR TYR LEU TYR ARG VAL VAL ALA ILE ASN GLY SEQRES 58 A 796 ARG ILE LEU PRO ARG HIS GLY SER VAL GLN ILE LYS LYS SEQRES 59 A 796 HIS SER PRO VAL LEU THR SER ASN GLY THR ARG GLU GLU SEQRES 60 A 796 ASP GLU PHE LYS MET ASP GLY ILE GLY ILE ASN ASP HIS SEQRES 61 A 796 SER GLN LEU MET LEU GLU CYS THR PRO ILE ILE ASN LEU SEQRES 62 A 796 PHE ILE VAL SEQRES 1 B 522 MET LYS PHE SER ALA GLY ALA VAL LEU SER TRP SER SER SEQRES 2 B 522 LEU LEU LEU ALA SER SER VAL PHE ALA GLN GLN GLU ALA SEQRES 3 B 522 VAL ALA PRO GLU ASP SER ALA VAL VAL LYS LEU ALA THR SEQRES 4 B 522 ASP SER PHE ASN GLU TYR ILE GLN SER HIS ASP LEU VAL SEQRES 5 B 522 LEU ALA GLU PHE PHE ALA PRO TRP CYS GLY HIS CYS LYS SEQRES 6 B 522 ASN MET ALA PRO GLU TYR VAL LYS ALA ALA GLU THR LEU SEQRES 7 B 522 VAL GLU LYS ASN ILE THR LEU ALA GLN ILE ASP CYS THR SEQRES 8 B 522 GLU ASN GLN ASP LEU CYS MET GLU HIS ASN ILE PRO GLY SEQRES 9 B 522 PHE PRO SER LEU LYS ILE PHE LYS ASN SER ASP VAL ASN SEQRES 10 B 522 ASN SER ILE ASP TYR GLU GLY PRO ARG THR ALA GLU ALA SEQRES 11 B 522 ILE VAL GLN PHE MET ILE LYS GLN SER GLN PRO ALA VAL SEQRES 12 B 522 ALA VAL VAL ALA ASP LEU PRO ALA TYR LEU ALA ASN GLU SEQRES 13 B 522 THR PHE VAL THR PRO VAL ILE VAL GLN SER GLY LYS ILE SEQRES 14 B 522 ASP ALA ASP PHE ASN ALA THR PHE TYR SER MET ALA ASN SEQRES 15 B 522 LYS HIS PHE ASN ASP TYR ASP PHE VAL SER ALA GLU ASN SEQRES 16 B 522 ALA ASP ASP ASP PHE LYS LEU SER ILE TYR LEU PRO SER SEQRES 17 B 522 ALA MET ASP GLU PRO VAL VAL TYR ASN GLY LYS LYS ALA SEQRES 18 B 522 ASP ILE ALA ASP ALA ASP VAL PHE GLU LYS TRP LEU GLN SEQRES 19 B 522 VAL GLU ALA LEU PRO TYR PHE GLY GLU ILE ASP GLY SER SEQRES 20 B 522 VAL PHE ALA GLN TYR VAL GLU SER GLY LEU PRO LEU GLY SEQRES 21 B 522 TYR LEU PHE TYR ASN ASP GLU GLU GLU LEU GLU GLU TYR SEQRES 22 B 522 LYS PRO LEU PHE THR GLU LEU ALA LYS LYS ASN ARG GLY SEQRES 23 B 522 LEU MET ASN PHE VAL SER ILE ASP ALA ARG LYS PHE GLY SEQRES 24 B 522 ARG HIS ALA GLY ASN LEU ASN MET LYS GLU GLN PHE PRO SEQRES 25 B 522 LEU PHE ALA ILE HIS ASP MET THR GLU ASP LEU LYS TYR SEQRES 26 B 522 GLY LEU PRO GLN LEU SER GLU GLU ALA PHE ASP GLU LEU SEQRES 27 B 522 SER ASP LYS ILE VAL LEU GLU SER LYS ALA ILE GLU SER SEQRES 28 B 522 LEU VAL LYS ASP PHE LEU LYS GLY ASP ALA SER PRO ILE SEQRES 29 B 522 VAL LYS SER GLN GLU ILE PHE GLU ASN GLN ASP SER SER SEQRES 30 B 522 VAL PHE GLN LEU VAL GLY LYS ASN HIS ASP GLU ILE VAL SEQRES 31 B 522 ASN ASP PRO LYS LYS ASP VAL LEU VAL LEU TYR TYR ALA SEQRES 32 B 522 PRO TRP CYS GLY HIS CYS LYS ARG LEU ALA PRO THR TYR SEQRES 33 B 522 GLN GLU LEU ALA ASP THR TYR ALA ASN ALA THR SER ASP SEQRES 34 B 522 VAL LEU ILE ALA LYS LEU ASP HIS THR GLU ASN ASP VAL SEQRES 35 B 522 ARG GLY VAL VAL ILE GLU GLY TYR PRO THR ILE VAL LEU SEQRES 36 B 522 TYR PRO GLY GLY LYS LYS SER GLU SER VAL VAL TYR GLN SEQRES 37 B 522 GLY SER ARG SER LEU ASP SER LEU PHE ASP PHE ILE LYS SEQRES 38 B 522 GLU ASN GLY HIS PHE ASP VAL ASP GLY LYS ALA LEU TYR SEQRES 39 B 522 GLU GLU ALA GLN GLU LYS ALA ALA GLU GLU ALA ASP ALA SEQRES 40 B 522 ASP ALA GLU LEU ALA ASP GLU GLU ASP ALA ILE HIS ASP SEQRES 41 B 522 GLU LEU HET NAG A 801 15 HET CA A 802 1 HET NAG B 601 15 HET NAG B 602 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 4 CA CA 2+ HELIX 1 AA1 THR A 28 HIS A 53 1 26 HELIX 2 AA2 ASP A 77 ASP A 82 1 6 HELIX 3 AA3 THR A 88 LEU A 101 1 14 HELIX 4 AA4 ASP A 103 PHE A 118 1 16 HELIX 5 AA5 VAL A 131 THR A 150 1 20 HELIX 6 AA6 LEU A 158 TYR A 162 5 5 HELIX 7 AA7 GLY A 164 LEU A 178 1 15 HELIX 8 AA8 PRO A 179 LEU A 182 5 4 HELIX 9 AA9 VAL A 213 SER A 218 1 6 HELIX 10 AB1 PRO A 219 GLY A 231 1 13 HELIX 11 AB2 PRO A 233 LEU A 249 1 17 HELIX 12 AB3 ILE A 278 PHE A 292 1 15 HELIX 13 AB4 ASP A 294 ASN A 311 1 18 HELIX 14 AB5 LEU A 336 ALA A 338 5 3 HELIX 15 AB6 PHE A 339 GLY A 348 1 10 HELIX 16 AB7 ASP A 349 GLY A 368 1 20 HELIX 17 AB8 PRO A 408 LYS A 422 1 15 HELIX 18 AB9 ASP A 423 PHE A 441 1 19 HELIX 19 AC1 GLU A 463 ASP A 479 1 17 HELIX 20 AC2 ASN A 482 SER A 487 1 6 HELIX 21 AC3 PRO A 503 ASN A 513 1 11 HELIX 22 AC4 SER A 594 PHE A 600 1 7 HELIX 23 AC5 ASP A 601 LEU A 603 5 3 HELIX 24 AC6 PHE A 604 PHE A 610 1 7 HELIX 25 AC7 PRO A 617 HIS A 621 5 5 HELIX 26 AC8 ALA A 625 LEU A 628 5 4 HELIX 27 AC9 GLU A 629 ASN A 634 1 6 HELIX 28 AD1 THR A 704 PHE A 708 5 5 HELIX 29 AD2 ASN A 719 SER A 726 1 8 HELIX 30 AD3 ALA B 38 HIS B 49 1 12 HELIX 31 AD4 CYS B 61 GLU B 80 1 20 HELIX 32 AD5 ASN B 93 HIS B 100 1 8 HELIX 33 AD6 THR B 127 GLN B 140 1 14 HELIX 34 AD7 ASP B 148 GLU B 156 1 9 HELIX 35 AD8 ASP B 170 HIS B 184 1 15 HELIX 36 AD9 LYS B 219 ALA B 224 1 6 HELIX 37 AE1 ASP B 225 ALA B 237 1 13 HELIX 38 AE2 ASP B 245 GLY B 256 1 12 HELIX 39 AE3 ASP B 266 ASN B 284 1 19 HELIX 40 AE4 GLY B 299 LEU B 305 1 7 HELIX 41 AE5 SER B 331 LEU B 338 1 8 HELIX 42 AE6 GLU B 345 GLY B 359 1 15 HELIX 43 AE7 VAL B 382 ASN B 391 1 10 HELIX 44 AE8 CYS B 406 ASN B 425 1 20 HELIX 45 AE9 SER B 472 GLY B 484 1 13 HELIX 46 AF1 ASP B 489 LYS B 500 1 12 SHEET 1 AA1 2 GLU A 59 LYS A 61 0 SHEET 2 AA1 2 VAL A 66 LYS A 68 -1 O LYS A 68 N GLU A 59 SHEET 1 AA2 2 THR A 128 GLN A 130 0 SHEET 2 AA2 2 ARG A 191 ASN A 193 -1 O ARG A 192 N ILE A 129 SHEET 1 AA3 2 ASN A 211 ASN A 212 0 SHEET 2 AA3 2 SER A 259 PHE A 260 -1 O PHE A 260 N ASN A 211 SHEET 1 AA4 2 MET A 271 THR A 272 0 SHEET 2 AA4 2 VAL A 321 MET A 322 -1 O VAL A 321 N THR A 272 SHEET 1 AA5 2 TRP A 332 ASP A 334 0 SHEET 2 AA5 2 ARG A 373 ASN A 375 -1 O TRP A 374 N ILE A 333 SHEET 1 AA6 2 PHE A 450 ASN A 452 0 SHEET 2 AA6 2 GLU A 457 LEU A 458 -1 O GLU A 457 N GLN A 451 SHEET 1 AA7 2 ILE A 492 PHE A 493 0 SHEET 2 AA7 2 PRO A 499 MET A 500 -1 O MET A 500 N ILE A 492 SHEET 1 AA8 4 ILE A 652 HIS A 663 0 SHEET 2 AA8 4 PHE A 680 GLN A 692 -1 O LEU A 686 N LEU A 655 SHEET 3 AA8 4 TYR A 732 ILE A 739 -1 O ARG A 735 N GLU A 689 SHEET 4 AA8 4 ARG A 742 ILE A 743 -1 O ARG A 742 N ILE A 739 SHEET 1 AA9 4 LEU A 668 MET A 669 0 SHEET 2 AA9 4 THR A 674 PHE A 677 -1 O THR A 676 N LEU A 668 SHEET 3 AA9 4 SER A 749 LYS A 753 1 O LYS A 753 N PHE A 677 SHEET 4 AA9 4 LEU A 793 VAL A 796 1 O PHE A 794 N VAL A 750 SHEET 1 AB1 3 ILE A 775 ILE A 777 0 SHEET 2 AB1 3 LEU A 783 LEU A 785 -1 O MET A 784 N GLY A 776 SHEET 3 AB1 3 THR A 788 PRO A 789 -1 O THR A 788 N LEU A 785 SHEET 1 AB2 5 VAL B 35 LYS B 36 0 SHEET 2 AB2 5 THR B 84 ASP B 89 1 O GLN B 87 N VAL B 35 SHEET 3 AB2 5 VAL B 52 PHE B 57 1 N GLU B 55 O ILE B 88 SHEET 4 AB2 5 SER B 107 PHE B 111 -1 O LYS B 109 N ALA B 54 SHEET 5 AB2 5 ILE B 120 ASP B 121 -1 O ILE B 120 N ILE B 110 SHEET 1 AB3 5 VAL B 143 VAL B 145 0 SHEET 2 AB3 5 ASP B 189 SER B 192 1 O SER B 192 N ALA B 144 SHEET 3 AB3 5 VAL B 162 SER B 166 1 N ILE B 163 O VAL B 191 SHEET 4 AB3 5 LYS B 201 LEU B 206 -1 O TYR B 205 N VAL B 162 SHEET 5 AB3 5 ALA B 209 PRO B 213 -1 O GLU B 212 N LEU B 206 SHEET 1 AB4 4 ASN B 289 ASP B 294 0 SHEET 2 AB4 4 LEU B 259 TYR B 264 1 N GLY B 260 O ASN B 289 SHEET 3 AB4 4 LEU B 313 ASP B 318 -1 O HIS B 317 N LEU B 259 SHEET 4 AB4 4 LEU B 323 GLY B 326 -1 O TYR B 325 N ILE B 316 SHEET 1 AB5 5 PHE B 379 LEU B 381 0 SHEET 2 AB5 5 VAL B 430 ASP B 436 1 O LYS B 434 N LEU B 381 SHEET 3 AB5 5 ASP B 396 TYR B 402 1 N ASP B 396 O LEU B 431 SHEET 4 AB5 5 THR B 452 TYR B 456 -1 O TYR B 456 N VAL B 397 SHEET 5 AB5 5 VAL B 465 VAL B 466 -1 O VAL B 465 N LEU B 455 SSBOND 1 CYS A 65 CYS A 445 1555 1555 2.03 SSBOND 2 CYS A 579 CYS B 406 1555 1555 2.03 SSBOND 3 CYS A 644 CYS B 61 1555 1555 2.04 SSBOND 4 CYS B 90 CYS B 97 1555 1555 2.03 LINK O THR A 495 CA CA A 802 1555 1555 2.64 LINK OG1 THR A 495 CA CA A 802 1555 1555 2.90 CISPEP 1 TYR A 55 PRO A 56 0 3.71 CISPEP 2 PHE B 105 PRO B 106 0 -5.90 CISPEP 3 PHE B 311 PRO B 312 0 1.10 CISPEP 4 TYR B 450 PRO B 451 0 -4.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 5432 VAL A 796 TER 9208 LYS B 500 HETATM 9209 C1 NAG A 801 122.992 103.063 60.858 1.00 96.29 C HETATM 9210 C2 NAG A 801 123.227 104.009 62.033 1.00 93.08 C HETATM 9211 C3 NAG A 801 122.737 103.372 63.330 1.00 89.85 C HETATM 9212 C4 NAG A 801 121.295 102.907 63.187 1.00 91.76 C HETATM 9213 C5 NAG A 801 121.151 102.010 61.961 1.00 96.41 C HETATM 9214 C6 NAG A 801 119.722 101.599 61.689 1.00 92.73 C HETATM 9215 C7 NAG A 801 125.080 105.622 62.061 1.00 93.22 C HETATM 9216 C8 NAG A 801 126.562 105.801 62.192 1.00 91.62 C HETATM 9217 N2 NAG A 801 124.633 104.364 62.140 1.00 90.06 N HETATM 9218 O1 NAG A 801 123.381 103.689 59.679 1.00 95.04 O HETATM 9219 O3 NAG A 801 122.837 104.320 64.386 1.00 88.59 O HETATM 9220 O4 NAG A 801 120.904 102.183 64.348 1.00 85.51 O HETATM 9221 O5 NAG A 801 121.612 102.707 60.795 1.00 99.06 O HETATM 9222 O6 NAG A 801 119.277 102.063 60.422 1.00 87.48 O HETATM 9223 O7 NAG A 801 124.323 106.572 61.890 1.00 92.09 O HETATM 9224 CA CA A 802 122.925 104.721 90.483 1.00 88.31 CA HETATM 9225 C1 NAG B 601 80.710 127.534 144.784 1.00103.67 C HETATM 9226 C2 NAG B 601 80.235 126.143 144.374 1.00103.56 C HETATM 9227 C3 NAG B 601 81.269 125.095 144.771 1.00 98.94 C HETATM 9228 C4 NAG B 601 82.637 125.462 144.213 1.00101.78 C HETATM 9229 C5 NAG B 601 83.009 126.883 144.625 1.00105.82 C HETATM 9230 C6 NAG B 601 84.301 127.361 144.003 1.00104.48 C HETATM 9231 C7 NAG B 601 77.811 125.763 144.260 1.00102.76 C HETATM 9232 C8 NAG B 601 76.571 125.440 145.038 1.00 99.06 C HETATM 9233 N2 NAG B 601 78.943 125.837 144.968 1.00102.38 N HETATM 9234 O1 NAG B 601 79.787 128.481 144.357 1.00102.27 O HETATM 9235 O3 NAG B 601 80.867 123.823 144.275 1.00 97.72 O HETATM 9236 O4 NAG B 601 83.620 124.559 144.705 1.00100.41 O HETATM 9237 O5 NAG B 601 81.985 127.796 144.204 1.00106.32 O HETATM 9238 O6 NAG B 601 84.059 128.225 142.901 1.00101.61 O HETATM 9239 O7 NAG B 601 77.789 125.948 143.048 1.00104.21 O HETATM 9240 C1 NAG B 602 89.426 146.649 129.414 1.00137.83 C HETATM 9241 C2 NAG B 602 89.499 145.849 128.117 1.00137.78 C HETATM 9242 C3 NAG B 602 90.182 144.508 128.363 1.00134.97 C HETATM 9243 C4 NAG B 602 91.535 144.715 129.030 1.00135.78 C HETATM 9244 C5 NAG B 602 91.384 145.574 130.282 1.00136.39 C HETATM 9245 C6 NAG B 602 92.709 145.930 130.916 1.00133.39 C HETATM 9246 C7 NAG B 602 87.759 146.249 126.430 1.00133.70 C HETATM 9247 C8 NAG B 602 86.361 145.930 125.994 1.00130.02 C HETATM 9248 N2 NAG B 602 88.173 145.652 127.552 1.00136.73 N HETATM 9249 O1 NAG B 602 88.854 147.889 129.157 1.00134.28 O HETATM 9250 O3 NAG B 602 90.355 143.832 127.123 1.00134.20 O HETATM 9251 O4 NAG B 602 92.094 143.457 129.391 1.00133.49 O HETATM 9252 O5 NAG B 602 90.738 146.812 129.951 1.00138.77 O HETATM 9253 O6 NAG B 602 93.499 146.734 130.051 1.00133.06 O HETATM 9254 O7 NAG B 602 88.479 147.013 125.795 1.00134.15 O CONECT 366 3197 CONECT 3197 366 CONECT 3598 9224 CONECT 3600 9224 CONECT 3816 8472 CONECT 4361 5731 CONECT 5731 4361 CONECT 5951 6006 CONECT 6006 5951 CONECT 8472 3816 CONECT 9209 9210 9218 9221 CONECT 9210 9209 9211 9217 CONECT 9211 9210 9212 9219 CONECT 9212 9211 9213 9220 CONECT 9213 9212 9214 9221 CONECT 9214 9213 9222 CONECT 9215 9216 9217 9223 CONECT 9216 9215 CONECT 9217 9210 9215 CONECT 9218 9209 CONECT 9219 9211 CONECT 9220 9212 CONECT 9221 9209 9213 CONECT 9222 9214 CONECT 9223 9215 CONECT 9224 3598 3600 CONECT 9225 9226 9234 9237 CONECT 9226 9225 9227 9233 CONECT 9227 9226 9228 9235 CONECT 9228 9227 9229 9236 CONECT 9229 9228 9230 9237 CONECT 9230 9229 9238 CONECT 9231 9232 9233 9239 CONECT 9232 9231 CONECT 9233 9226 9231 CONECT 9234 9225 CONECT 9235 9227 CONECT 9236 9228 CONECT 9237 9225 9229 CONECT 9238 9230 CONECT 9239 9231 CONECT 9240 9241 9249 9252 CONECT 9241 9240 9242 9248 CONECT 9242 9241 9243 9250 CONECT 9243 9242 9244 9251 CONECT 9244 9243 9245 9252 CONECT 9245 9244 9253 CONECT 9246 9247 9248 9254 CONECT 9247 9246 CONECT 9248 9241 9246 CONECT 9249 9240 CONECT 9250 9242 CONECT 9251 9243 CONECT 9252 9240 9244 CONECT 9253 9245 CONECT 9254 9246 MASTER 334 0 4 46 44 0 0 6 9252 2 56 103 END