HEADER VIRUS LIKE PARTICLE 04-JUN-24 8ZRE TITLE HBCAG-D4 FAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: C, D, A, B; COMPND 4 SYNONYM: CORE ANTIGEN,CORE PROTEIN,HBCAG,P21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LIGHT CHAINS OF D4 FAB; COMPND 8 CHAIN: L, l; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HEAVY CHAINS OF D4 FAB; COMPND 12 CHAIN: H, h; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS GENOTYPE C; SOURCE 3 ORGANISM_TAXID: 2764122; SOURCE 4 EXPRESSION_SYSTEM: YEAST CENTROMERIC EXPRESSION VECTOR P416CYC; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 422498; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS D4 ANTIBODY, HBCAG VLP, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR C.LIU,H.YAN,B.JU REVDAT 3 11-DEC-24 8ZRE 1 JRNL REVDAT 2 27-NOV-24 8ZRE 1 REMARK REVDAT 1 13-NOV-24 8ZRE 0 JRNL AUTH H.YAN,C.LIU,Y.LI,S.TANG,H.GUO,B.ZHOU,Q.FAN,H.WANG,X.GE, JRNL AUTH 2 X.WANG,X.LIAO,J.LI,Z.ZHANG,B.JU JRNL TITL THE CHARACTERIZATION AND STRUCTURAL BASIS OF A HUMAN BROADLY JRNL TITL 2 BINDING ANTIBODY TO HBV CORE PROTEIN. JRNL REF J.VIROL. 69424 2024 JRNL REFN ESSN 1098-5514 JRNL PMID 39601613 JRNL DOI 10.1128/JVI.01694-24 REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 PHENIX, CRYOSPARC, CRYOSPARC, RELION, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3J2V REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.440 REMARK 3 NUMBER OF PARTICLES : 16919 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ZRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048381. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF HBV CAPSID AND D4 REMARK 245 FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4137 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, L, H, l, h REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 2 0.951057 0.309017 0.000000 -0.00003 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.587785 -0.000000 0.00002 REMARK 350 BIOMT2 3 0.587785 -0.809017 0.000000 -0.00005 REMARK 350 BIOMT3 3 -0.000001 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.587785 -0.000001 0.00004 REMARK 350 BIOMT2 4 -0.587785 -0.809017 0.000000 -0.00003 REMARK 350 BIOMT3 4 -0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.951057 0.000000 0.00003 REMARK 350 BIOMT2 5 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 -0.447214 0.000000 0.894427 0.00003 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -0.00004 REMARK 350 BIOMT3 6 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 7 -0.138197 0.425326 0.894427 0.00004 REMARK 350 BIOMT2 7 -0.951056 -0.309017 0.000000 -0.00001 REMARK 350 BIOMT3 7 0.276393 -0.850651 0.447214 -0.00003 REMARK 350 BIOMT1 8 0.361803 0.262866 0.894427 0.00003 REMARK 350 BIOMT2 8 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 8 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 9 0.361803 -0.262866 0.894427 0.00002 REMARK 350 BIOMT2 9 0.587785 0.809017 0.000000 -0.00001 REMARK 350 BIOMT3 9 -0.723607 0.525731 0.447214 0.00002 REMARK 350 BIOMT1 10 -0.138197 -0.425326 0.894427 0.00002 REMARK 350 BIOMT2 10 0.951057 -0.309017 0.000000 -0.00004 REMARK 350 BIOMT3 10 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 11 0.447214 0.000000 -0.894427 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 -0.00004 REMARK 350 BIOMT3 11 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 12 0.138197 -0.425326 -0.894427 0.00000 REMARK 350 BIOMT2 12 -0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 12 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 13 -0.361803 -0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 13 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 13 0.723607 0.525731 -0.447214 -0.00002 REMARK 350 BIOMT1 14 -0.361803 0.262866 -0.894427 0.00002 REMARK 350 BIOMT2 14 0.587785 0.809017 0.000000 -0.00001 REMARK 350 BIOMT3 14 0.723607 -0.525731 -0.447214 -0.00004 REMARK 350 BIOMT1 15 0.138197 0.425326 -0.894427 0.00001 REMARK 350 BIOMT2 15 0.951056 -0.309017 0.000000 -0.00004 REMARK 350 BIOMT3 15 -0.276393 -0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00003 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 -0.00002 REMARK 350 BIOMT1 17 -0.309017 0.951057 0.000000 0.00004 REMARK 350 BIOMT2 17 0.951057 0.309017 0.000000 -0.00003 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 -0.00002 REMARK 350 BIOMT1 18 0.809017 0.587785 0.000000 0.00002 REMARK 350 BIOMT2 18 0.587785 -0.809017 0.000000 -0.00005 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 -0.00002 REMARK 350 BIOMT1 19 0.809017 -0.587785 0.000001 0.00000 REMARK 350 BIOMT2 19 -0.587785 -0.809017 0.000000 -0.00003 REMARK 350 BIOMT3 19 0.000001 0.000000 -1.000000 -0.00002 REMARK 350 BIOMT1 20 -0.309017 -0.951057 0.000000 0.00000 REMARK 350 BIOMT2 20 -0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 -0.00002 REMARK 350 BIOMT1 21 -0.447213 -0.850651 0.276393 0.00001 REMARK 350 BIOMT2 21 0.525731 0.000000 0.850651 -0.00002 REMARK 350 BIOMT3 21 -0.723607 0.525731 0.447213 0.00002 REMARK 350 BIOMT1 22 -0.947214 0.162460 0.276393 0.00004 REMARK 350 BIOMT2 22 0.162460 -0.500000 0.850651 -0.00002 REMARK 350 BIOMT3 22 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 23 -0.138197 0.951057 0.276393 0.00004 REMARK 350 BIOMT2 23 -0.425326 -0.309017 0.850651 -0.00001 REMARK 350 BIOMT3 23 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 24 0.861803 0.425326 0.276393 0.00001 REMARK 350 BIOMT2 24 -0.425326 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 24 0.276393 -0.850651 0.447214 -0.00003 REMARK 350 BIOMT1 25 0.670821 -0.688191 0.276393 0.00000 REMARK 350 BIOMT2 25 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 25 -0.723607 -0.525731 0.447213 0.00000 REMARK 350 BIOMT1 26 0.447213 0.850651 -0.276393 0.00002 REMARK 350 BIOMT2 26 0.525731 0.000000 0.850651 -0.00002 REMARK 350 BIOMT3 26 0.723607 -0.525731 -0.447213 -0.00004 REMARK 350 BIOMT1 27 0.947214 -0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 27 0.162460 -0.500000 0.850651 -0.00002 REMARK 350 BIOMT3 27 -0.276393 -0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 28 0.138197 -0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 28 -0.425326 -0.309017 0.850651 -0.00001 REMARK 350 BIOMT3 28 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 29 -0.861803 -0.425326 -0.276393 0.00002 REMARK 350 BIOMT2 29 -0.425326 0.309017 0.850651 0.00000 REMARK 350 BIOMT3 29 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 30 -0.670821 0.688191 -0.276393 0.00004 REMARK 350 BIOMT2 30 0.162460 0.500000 0.850651 0.00000 REMARK 350 BIOMT3 30 0.723607 0.525731 -0.447214 -0.00002 REMARK 350 BIOMT1 31 -0.447213 0.850651 0.276393 0.00004 REMARK 350 BIOMT2 31 -0.525731 0.000000 -0.850651 -0.00002 REMARK 350 BIOMT3 31 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 32 0.670821 0.688191 0.276393 0.00002 REMARK 350 BIOMT2 32 -0.162460 0.500000 -0.850651 -0.00002 REMARK 350 BIOMT3 32 -0.723607 0.525731 0.447213 0.00002 REMARK 350 BIOMT1 33 0.861803 -0.425326 0.276393 0.00000 REMARK 350 BIOMT2 33 0.425326 0.309017 -0.850651 -0.00003 REMARK 350 BIOMT3 33 0.276393 0.850651 0.447214 0.00000 REMARK 350 BIOMT1 34 -0.138197 -0.951056 0.276393 0.00000 REMARK 350 BIOMT2 34 0.425326 -0.309017 -0.850651 -0.00004 REMARK 350 BIOMT3 34 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 35 -0.947214 -0.162460 0.276393 0.00003 REMARK 350 BIOMT2 35 -0.162460 -0.500000 -0.850651 -0.00004 REMARK 350 BIOMT3 35 0.276393 -0.850651 0.447214 -0.00003 REMARK 350 BIOMT1 36 0.447213 -0.850651 -0.276393 -0.00001 REMARK 350 BIOMT2 36 -0.525731 0.000000 -0.850651 -0.00002 REMARK 350 BIOMT3 36 0.723607 0.525731 -0.447213 -0.00002 REMARK 350 BIOMT1 37 -0.670821 -0.688191 -0.276393 0.00001 REMARK 350 BIOMT2 37 -0.162460 0.500000 -0.850651 -0.00002 REMARK 350 BIOMT3 37 0.723607 -0.525731 -0.447213 -0.00004 REMARK 350 BIOMT1 38 -0.861803 0.425326 -0.276393 0.00004 REMARK 350 BIOMT2 38 0.425326 0.309017 -0.850651 -0.00003 REMARK 350 BIOMT3 38 -0.276393 -0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 39 0.138197 0.951056 -0.276393 0.00003 REMARK 350 BIOMT2 39 0.425326 -0.309017 -0.850651 -0.00004 REMARK 350 BIOMT3 39 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 40 0.947214 0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 40 -0.162460 -0.500000 -0.850651 -0.00004 REMARK 350 BIOMT3 40 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 41 -0.447213 0.525731 -0.723607 0.00003 REMARK 350 BIOMT2 41 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 41 0.276393 0.850651 0.447213 0.00000 REMARK 350 BIOMT1 42 0.361803 0.587785 -0.723607 0.00002 REMARK 350 BIOMT2 42 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 42 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 43 0.670821 -0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 43 0.688191 0.500000 0.525731 -0.00002 REMARK 350 BIOMT3 43 0.276393 -0.850651 0.447213 -0.00003 REMARK 350 BIOMT1 44 0.052787 -0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 44 0.688191 -0.500000 0.525731 -0.00004 REMARK 350 BIOMT3 44 -0.723607 -0.525731 0.447213 0.00000 REMARK 350 BIOMT1 45 -0.638196 -0.262866 -0.723607 0.00002 REMARK 350 BIOMT2 45 -0.262866 -0.809017 0.525731 -0.00003 REMARK 350 BIOMT3 45 -0.723607 0.525731 0.447213 0.00002 REMARK 350 BIOMT1 46 -0.447213 -0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 46 0.850651 0.000000 -0.525731 -0.00004 REMARK 350 BIOMT3 46 0.276393 -0.850651 0.447214 -0.00003 REMARK 350 BIOMT1 47 -0.638196 0.262866 -0.723607 0.00003 REMARK 350 BIOMT2 47 0.262866 -0.809017 -0.525731 -0.00005 REMARK 350 BIOMT3 47 -0.723607 -0.525731 0.447213 0.00000 REMARK 350 BIOMT1 48 0.052787 0.688191 -0.723607 0.00002 REMARK 350 BIOMT2 48 -0.688191 -0.500000 -0.525731 -0.00002 REMARK 350 BIOMT3 48 -0.723607 0.525731 0.447213 0.00002 REMARK 350 BIOMT1 49 0.670821 0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 49 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 49 0.276393 0.850651 0.447213 0.00000 REMARK 350 BIOMT1 50 0.361803 -0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 50 0.262866 0.809017 -0.525731 -0.00001 REMARK 350 BIOMT3 50 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 51 0.447213 -0.525731 0.723607 0.00000 REMARK 350 BIOMT2 51 -0.850651 0.000000 0.525731 0.00000 REMARK 350 BIOMT3 51 -0.276393 -0.850651 -0.447213 -0.00003 REMARK 350 BIOMT1 52 -0.361803 -0.587785 0.723607 0.00002 REMARK 350 BIOMT2 52 -0.262866 0.809017 0.525731 0.00000 REMARK 350 BIOMT3 52 -0.894427 0.000000 -0.447214 0.00000 REMARK 350 BIOMT1 53 -0.670821 0.162460 0.723607 0.00004 REMARK 350 BIOMT2 53 0.688191 0.500000 0.525731 -0.00002 REMARK 350 BIOMT3 53 -0.276393 0.850651 -0.447214 0.00000 REMARK 350 BIOMT1 54 -0.052787 0.688191 0.723607 0.00004 REMARK 350 BIOMT2 54 0.688191 -0.500000 0.525731 -0.00004 REMARK 350 BIOMT3 54 0.723607 0.525731 -0.447213 -0.00002 REMARK 350 BIOMT1 55 0.638196 0.262866 0.723607 0.00002 REMARK 350 BIOMT2 55 -0.262866 -0.809017 0.525731 -0.00003 REMARK 350 BIOMT3 55 0.723607 -0.525731 -0.447213 -0.00004 REMARK 350 BIOMT1 56 0.447213 0.525731 0.723607 0.00003 REMARK 350 BIOMT2 56 0.850651 0.000000 -0.525731 -0.00004 REMARK 350 BIOMT3 56 -0.276393 0.850651 -0.447213 0.00000 REMARK 350 BIOMT1 57 0.638196 -0.262866 0.723607 0.00000 REMARK 350 BIOMT2 57 0.262866 -0.809017 -0.525731 -0.00005 REMARK 350 BIOMT3 57 0.723607 0.525731 -0.447213 -0.00002 REMARK 350 BIOMT1 58 -0.052787 -0.688191 0.723607 0.00001 REMARK 350 BIOMT2 58 -0.688191 -0.500000 -0.525731 -0.00002 REMARK 350 BIOMT3 58 0.723607 -0.525731 -0.447213 -0.00004 REMARK 350 BIOMT1 59 -0.670821 -0.162460 0.723607 0.00003 REMARK 350 BIOMT2 59 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 59 -0.276393 -0.850651 -0.447213 -0.00003 REMARK 350 BIOMT1 60 -0.361803 0.587785 0.723607 0.00004 REMARK 350 BIOMT2 60 0.262866 0.809017 -0.525731 -0.00001 REMARK 350 BIOMT3 60 -0.894427 0.000000 -0.447214 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 40 REMARK 465 ALA D 41 REMARK 465 LEU D 42 REMARK 465 GLU D 43 REMARK 465 SER D 44 REMARK 465 PRO D 45 REMARK 465 GLU D 46 REMARK 465 HIS D 47 REMARK 465 CYS D 48 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 26 -149.77 -77.57 REMARK 500 CYS C 48 -111.51 57.48 REMARK 500 PRO C 50 163.09 -47.85 REMARK 500 HIS C 51 -14.86 75.67 REMARK 500 ASN C 75 -169.13 -78.86 REMARK 500 VAL C 91 -28.75 -175.72 REMARK 500 THR C 128 138.93 177.67 REMARK 500 PRO C 129 135.04 -38.28 REMARK 500 SER C 141 -136.21 57.38 REMARK 500 ASP D 2 31.03 -95.51 REMARK 500 ASP D 4 113.43 -170.43 REMARK 500 SER D 26 -177.37 -69.87 REMARK 500 LEU D 76 68.43 61.50 REMARK 500 VAL D 91 -62.76 -123.54 REMARK 500 ARG D 112 -73.93 -52.99 REMARK 500 THR D 114 36.75 -72.68 REMARK 500 VAL D 115 -52.27 -134.95 REMARK 500 SER D 141 -170.79 64.95 REMARK 500 LYS A 7 -63.11 -1.96 REMARK 500 CYS A 48 -169.53 -165.62 REMARK 500 PRO A 50 -33.65 -35.71 REMARK 500 ASN A 75 -167.00 -102.69 REMARK 500 LEU A 76 68.06 60.07 REMARK 500 ASP A 78 109.19 -52.84 REMARK 500 VAL A 91 -62.40 -94.97 REMARK 500 ARG A 98 -70.84 -51.48 REMARK 500 THR A 109 -105.58 -69.22 REMARK 500 SER A 141 -174.24 57.85 REMARK 500 TYR B 38 25.65 -140.19 REMARK 500 CYS B 48 -127.18 50.64 REMARK 500 LEU B 76 66.61 61.50 REMARK 500 SER B 141 -167.29 60.98 REMARK 500 SER H 104 -62.94 -126.97 REMARK 500 SER h 104 -63.05 -126.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60395 RELATED DB: EMDB REMARK 900 HBCAG-D4 FAB COMPLEX DBREF1 8ZRE C 1 142 UNP A0A679FG23_HBV DBREF2 8ZRE C A0A679FG23 1 142 DBREF1 8ZRE D 1 142 UNP A0A679FG23_HBV DBREF2 8ZRE D A0A679FG23 1 142 DBREF1 8ZRE A 1 142 UNP A0A679FG23_HBV DBREF2 8ZRE A A0A679FG23 1 142 DBREF1 8ZRE B 1 142 UNP A0A679FG23_HBV DBREF2 8ZRE B A0A679FG23 1 142 DBREF 8ZRE L 1 114 PDB 8ZRE 8ZRE 1 114 DBREF 8ZRE H 1 121 PDB 8ZRE 8ZRE 1 121 DBREF 8ZRE l 1 114 PDB 8ZRE 8ZRE 1 114 DBREF 8ZRE h 1 121 PDB 8ZRE 8ZRE 1 121 SEQRES 1 C 142 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA SER VAL SEQRES 2 C 142 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 C 142 ILE ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 C 142 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 C 142 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 C 142 MET ASN LEU ALA THR TRP VAL GLY SER ASN LEU GLU ASP SEQRES 7 C 142 PRO ALA SER ARG GLU LEU VAL VAL SER TYR VAL ASN VAL SEQRES 8 C 142 ASN MET GLY LEU LYS ILE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 C 142 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 C 142 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 C 142 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR SEQRES 1 D 142 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA SER VAL SEQRES 2 D 142 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 D 142 ILE ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 D 142 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 D 142 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 D 142 MET ASN LEU ALA THR TRP VAL GLY SER ASN LEU GLU ASP SEQRES 7 D 142 PRO ALA SER ARG GLU LEU VAL VAL SER TYR VAL ASN VAL SEQRES 8 D 142 ASN MET GLY LEU LYS ILE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 D 142 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 D 142 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 D 142 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR SEQRES 1 A 142 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA SER VAL SEQRES 2 A 142 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 A 142 ILE ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 A 142 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 A 142 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 A 142 MET ASN LEU ALA THR TRP VAL GLY SER ASN LEU GLU ASP SEQRES 7 A 142 PRO ALA SER ARG GLU LEU VAL VAL SER TYR VAL ASN VAL SEQRES 8 A 142 ASN MET GLY LEU LYS ILE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 A 142 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 A 142 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 A 142 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR SEQRES 1 B 142 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA SER VAL SEQRES 2 B 142 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 B 142 ILE ARG ASP LEU LEU ASP THR ALA SER ALA LEU TYR ARG SEQRES 4 B 142 GLU ALA LEU GLU SER PRO GLU HIS CYS SER PRO HIS HIS SEQRES 5 B 142 THR ALA LEU ARG GLN ALA ILE LEU CYS TRP GLY GLU LEU SEQRES 6 B 142 MET ASN LEU ALA THR TRP VAL GLY SER ASN LEU GLU ASP SEQRES 7 B 142 PRO ALA SER ARG GLU LEU VAL VAL SER TYR VAL ASN VAL SEQRES 8 B 142 ASN MET GLY LEU LYS ILE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 B 142 ILE SER CYS LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 B 142 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 B 142 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR SEQRES 1 L 114 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU ALA VAL SEQRES 2 L 114 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 114 GLN THR LEU LEU HIS ASN ASN GLY TYR ASN TYR PHE SER SEQRES 4 L 114 TRP TYR LEU GLN LYS PRO GLY GLN ALA PRO GLN LEU LEU SEQRES 5 L 114 ILE TYR LEU GLY SER ASN ARG ALA PRO GLY VAL SER ASP SEQRES 6 L 114 ARG PHE SER GLY SER GLY SER GLY THR SER PHE THR LEU SEQRES 7 L 114 GLU ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 114 TYR CYS MET GLN GLY ARG HIS THR PRO TRP THR PHE GLY SEQRES 9 L 114 GLN GLY THR LYS VAL GLU ILE LYS ARG THR SEQRES 1 H 121 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 121 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 121 PHE ASN PHE ASN LYS PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 121 VAL PRO GLY LYS GLY LEU GLU TRP LEU THR TYR ILE TRP SEQRES 5 H 121 TYR ASP GLY SER ASN ALA ASP TYR VAL ASP SER VAL LYS SEQRES 6 H 121 GLY ARG PHE THR ILE SER ARG ASP ASN SER ILE ASN THR SEQRES 7 H 121 LEU TYR LEU GLN MET ASN SER LEU ARG ALA ASP ASP THR SEQRES 8 H 121 ALA VAL TYR PHE CYS ALA ARG GLY PHE TYR ASP SER SER SEQRES 9 H 121 SER LEU GLU SER TRP GLY GLN GLY ALA LEU VAL ILE VAL SEQRES 10 H 121 SER SER ALA SER SEQRES 1 l 114 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU ALA VAL SEQRES 2 l 114 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 l 114 GLN THR LEU LEU HIS ASN ASN GLY TYR ASN TYR PHE SER SEQRES 4 l 114 TRP TYR LEU GLN LYS PRO GLY GLN ALA PRO GLN LEU LEU SEQRES 5 l 114 ILE TYR LEU GLY SER ASN ARG ALA PRO GLY VAL SER ASP SEQRES 6 l 114 ARG PHE SER GLY SER GLY SER GLY THR SER PHE THR LEU SEQRES 7 l 114 GLU ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 l 114 TYR CYS MET GLN GLY ARG HIS THR PRO TRP THR PHE GLY SEQRES 9 l 114 GLN GLY THR LYS VAL GLU ILE LYS ARG THR SEQRES 1 h 121 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 h 121 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 h 121 PHE ASN PHE ASN LYS PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 h 121 VAL PRO GLY LYS GLY LEU GLU TRP LEU THR TYR ILE TRP SEQRES 5 h 121 TYR ASP GLY SER ASN ALA ASP TYR VAL ASP SER VAL LYS SEQRES 6 h 121 GLY ARG PHE THR ILE SER ARG ASP ASN SER ILE ASN THR SEQRES 7 h 121 LEU TYR LEU GLN MET ASN SER LEU ARG ALA ASP ASP THR SEQRES 8 h 121 ALA VAL TYR PHE CYS ALA ARG GLY PHE TYR ASP SER SER SEQRES 9 h 121 SER LEU GLU SER TRP GLY GLN GLY ALA LEU VAL ILE VAL SEQRES 10 h 121 SER SER ALA SER HELIX 1 AA1 SER C 12 LEU C 19 1 8 HELIX 2 AA2 PRO C 20 PHE C 24 5 5 HELIX 3 AA3 ILE C 27 SER C 44 1 18 HELIX 4 AA4 HIS C 51 ASN C 75 1 25 HELIX 5 AA5 ASP C 78 ASN C 90 1 13 HELIX 6 AA6 MET C 93 GLY C 111 1 19 HELIX 7 AA7 ARG C 112 ARG C 127 1 16 HELIX 8 AA8 PRO C 129 ARG C 133 5 5 HELIX 9 AA9 TYR D 6 GLY D 10 5 5 HELIX 10 AB1 SER D 12 PHE D 18 1 7 HELIX 11 AB2 PRO D 20 PHE D 24 5 5 HELIX 12 AB3 ILE D 27 TYR D 38 1 12 HELIX 13 AB4 PRO D 50 ASN D 75 1 26 HELIX 14 AB5 PRO D 79 VAL D 91 1 13 HELIX 15 AB6 GLY D 94 GLY D 111 1 18 HELIX 16 AB7 ARG D 112 THR D 128 1 17 HELIX 17 AB8 TYR A 6 GLY A 10 5 5 HELIX 18 AB9 SER A 12 PHE A 18 1 7 HELIX 19 AC1 SER A 26 GLU A 43 1 18 HELIX 20 AC2 PRO A 50 ASN A 75 1 26 HELIX 21 AC3 ASP A 78 ASN A 92 1 15 HELIX 22 AC4 GLY A 94 THR A 109 1 16 HELIX 23 AC5 GLY A 111 THR A 128 1 18 HELIX 24 AC6 ASP B 4 GLY B 10 5 7 HELIX 25 AC7 SER B 12 PHE B 18 1 7 HELIX 26 AC8 SER B 26 SER B 44 1 19 HELIX 27 AC9 SER B 49 ASN B 75 1 27 HELIX 28 AD1 ASP B 78 VAL B 91 1 14 HELIX 29 AD2 MET B 93 GLY B 111 1 19 HELIX 30 AD3 GLY B 111 THR B 128 1 18 HELIX 31 AD4 PRO B 129 ARG B 133 5 5 HELIX 32 AD5 GLU L 84 VAL L 88 5 5 HELIX 33 AD6 ASN H 28 PHE H 32 5 5 HELIX 34 AD7 ARG H 87 THR H 91 5 5 HELIX 35 AD8 GLU l 84 VAL l 88 5 5 HELIX 36 AD9 ASN h 28 PHE h 32 5 5 HELIX 37 AE1 ARG h 87 THR h 91 5 5 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA1 4 SER L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 AA1 4 PHE L 67 SER L 72 -1 N SER L 68 O GLU L 79 SHEET 1 AA2 6 SER L 10 ALA L 12 0 SHEET 2 AA2 6 THR L 107 GLU L 110 1 O LYS L 108 N LEU L 11 SHEET 3 AA2 6 VAL L 90 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA2 6 PHE L 38 GLN L 43 -1 N TYR L 41 O TYR L 92 SHEET 5 AA2 6 GLN L 50 TYR L 54 -1 O GLN L 50 N LEU L 42 SHEET 6 AA2 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA3 4 SER L 10 ALA L 12 0 SHEET 2 AA3 4 THR L 107 GLU L 110 1 O LYS L 108 N LEU L 11 SHEET 3 AA3 4 VAL L 90 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA3 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AA4 4 GLN H 3 SER H 7 0 SHEET 2 AA4 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA4 4 THR H 78 MET H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 AA4 4 PHE H 68 ARG H 72 -1 N THR H 69 O GLN H 82 SHEET 1 AA5 6 GLY H 10 VAL H 12 0 SHEET 2 AA5 6 ALA H 113 VAL H 117 1 O ILE H 116 N VAL H 12 SHEET 3 AA5 6 ALA H 92 ARG H 98 -1 N TYR H 94 O ALA H 113 SHEET 4 AA5 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 AA5 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA5 6 ALA H 58 TYR H 60 -1 O ASP H 59 N TYR H 50 SHEET 1 AA6 4 GLY H 10 VAL H 12 0 SHEET 2 AA6 4 ALA H 113 VAL H 117 1 O ILE H 116 N VAL H 12 SHEET 3 AA6 4 ALA H 92 ARG H 98 -1 N TYR H 94 O ALA H 113 SHEET 4 AA6 4 SER H 108 TRP H 109 -1 O SER H 108 N ARG H 98 SHEET 1 AA7 4 MET l 4 SER l 7 0 SHEET 2 AA7 4 ALA l 19 SER l 25 -1 O SER l 22 N SER l 7 SHEET 3 AA7 4 SER l 75 ILE l 80 -1 O LEU l 78 N ILE l 21 SHEET 4 AA7 4 PHE l 67 SER l 72 -1 N SER l 68 O GLU l 79 SHEET 1 AA8 6 SER l 10 ALA l 12 0 SHEET 2 AA8 6 THR l 107 GLU l 110 1 O LYS l 108 N LEU l 11 SHEET 3 AA8 6 VAL l 90 GLN l 95 -1 N TYR l 91 O THR l 107 SHEET 4 AA8 6 PHE l 38 GLN l 43 -1 N TYR l 41 O TYR l 92 SHEET 5 AA8 6 GLN l 50 TYR l 54 -1 O GLN l 50 N LEU l 42 SHEET 6 AA8 6 ASN l 58 ARG l 59 -1 O ASN l 58 N TYR l 54 SHEET 1 AA9 4 SER l 10 ALA l 12 0 SHEET 2 AA9 4 THR l 107 GLU l 110 1 O LYS l 108 N LEU l 11 SHEET 3 AA9 4 VAL l 90 GLN l 95 -1 N TYR l 91 O THR l 107 SHEET 4 AA9 4 THR l 102 PHE l 103 -1 O THR l 102 N GLN l 95 SHEET 1 AB1 4 GLN h 3 SER h 7 0 SHEET 2 AB1 4 LEU h 18 SER h 25 -1 O SER h 21 N SER h 7 SHEET 3 AB1 4 THR h 78 MET h 83 -1 O LEU h 79 N CYS h 22 SHEET 4 AB1 4 PHE h 68 ARG h 72 -1 N THR h 69 O GLN h 82 SHEET 1 AB2 6 GLY h 10 VAL h 12 0 SHEET 2 AB2 6 ALA h 113 VAL h 117 1 O ILE h 116 N VAL h 12 SHEET 3 AB2 6 ALA h 92 ARG h 98 -1 N TYR h 94 O ALA h 113 SHEET 4 AB2 6 MET h 34 GLN h 39 -1 N VAL h 37 O PHE h 95 SHEET 5 AB2 6 GLU h 46 ILE h 51 -1 O GLU h 46 N ARG h 38 SHEET 6 AB2 6 ALA h 58 TYR h 60 -1 O ASP h 59 N TYR h 50 SHEET 1 AB3 4 GLY h 10 VAL h 12 0 SHEET 2 AB3 4 ALA h 113 VAL h 117 1 O ILE h 116 N VAL h 12 SHEET 3 AB3 4 ALA h 92 ARG h 98 -1 N TYR h 94 O ALA h 113 SHEET 4 AB3 4 SER h 108 TRP h 109 -1 O SER h 108 N ARG h 98 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 3 CYS l 23 CYS l 93 1555 1555 2.04 SSBOND 4 CYS h 22 CYS h 96 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 -3.61 CISPEP 2 THR L 99 PRO L 100 0 -0.41 CISPEP 3 SER l 7 PRO l 8 0 -3.76 CISPEP 4 THR l 99 PRO l 100 0 -0.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000