data_8ZYD # _entry.id 8ZYD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ZYD pdb_00008zyd 10.2210/pdb8zyd/pdb WWPDB D_1300048716 ? ? EMDB EMD-60562 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-08-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ZYD _pdbx_database_status.recvd_initial_deposition_date 2024-06-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8ZYC unspecified EMDB . EMD-60561 'other EM volume' EMDB 'Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex B' EMD-60562 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email kozo-tomita@edu.k.u-tokyo.ac.jp _pdbx_contact_author.name_first Kozo _pdbx_contact_author.name_last Tomita _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7374-3898 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Feng, Z.' 1 0009-0009-3834-1306 'Yashiro, Y.' 2 0000-0001-5512-026X 'Tomita, K.' 3 0000-0002-7374-3898 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Mechanism of activation of contact-dependent growth inhibition tRNase toxin by the amino acid biogenesis factor CysK in the bacterial competition system. ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feng, Z.' 1 0009-0009-3834-1306 primary 'Yashiro, Y.' 2 0000-0001-5512-026X primary 'Tomita, K.' 3 0000-0002-7374-3898 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cysteine synthase A' 34756.688 2 2.5.1.47 ? ? ? 2 polymer man 'tRNA nuclease CdiA' 25181.250 1 3.1.-.- H178A ? ? 3 polymer man tRNAIleGAU 25000.869 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'CSase A,O-acetylserine (thiol)-lyase A,OAS-TL A,O-acetylserine sulfhydrylase A,Sulfate starvation-induced protein 5,SSI5' 2 'tRNase CdiA,Anticodon nuclease CdiA,CdiA-EC536,Toxin CdiA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSV(LLP)CRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIA LAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKT TGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIP ANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLF TEKELQQ ; ;MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYV AAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLD LKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE LQQ ; A,E ? 2 'polypeptide(L)' no no ;MHHHHHHVENNALSLVARGCAVAAPCRTKVAEQLLEIGAKAGMAGLAGAAVKDMADRMTSDELEHLITLQMMGNDEITTK YLSSLHDKYGSGAASNPNIGKDLTDAEKVELGGSGSGTGTPPPSENDPKQQNEKTVDKLNQKQESAIKKIDNTIKNALKD HDIIGTLKDMDGKPVPKENGGYWDAMQEMQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI ; ;MHHHHHHVENNALSLVARGCAVAAPCRTKVAEQLLEIGAKAGMAGLAGAAVKDMADRMTSDELEHLITLQMMGNDEITTK YLSSLHDKYGSGAASNPNIGKDLTDAEKVELGGSGSGTGTPPPSENDPKQQNEKTVDKLNQKQESAIKKIDNTIKNALKD HDIIGTLKDMDGKPVPKENGGYWDAMQEMQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI ; B ? 3 polyribonucleotide no yes ;AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAU(T6A)AGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCUACC A ; AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCUACCA C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LYS n 1 4 ILE n 1 5 PHE n 1 6 GLU n 1 7 ASP n 1 8 ASN n 1 9 SER n 1 10 LEU n 1 11 THR n 1 12 ILE n 1 13 GLY n 1 14 HIS n 1 15 THR n 1 16 PRO n 1 17 LEU n 1 18 VAL n 1 19 ARG n 1 20 LEU n 1 21 ASN n 1 22 ARG n 1 23 ILE n 1 24 GLY n 1 25 ASN n 1 26 GLY n 1 27 ARG n 1 28 ILE n 1 29 LEU n 1 30 ALA n 1 31 LYS n 1 32 VAL n 1 33 GLU n 1 34 SER n 1 35 ARG n 1 36 ASN n 1 37 PRO n 1 38 SER n 1 39 PHE n 1 40 SER n 1 41 VAL n 1 42 LLP n 1 43 CYS n 1 44 ARG n 1 45 ILE n 1 46 GLY n 1 47 ALA n 1 48 ASN n 1 49 MET n 1 50 ILE n 1 51 TRP n 1 52 ASP n 1 53 ALA n 1 54 GLU n 1 55 LYS n 1 56 ARG n 1 57 GLY n 1 58 VAL n 1 59 LEU n 1 60 LYS n 1 61 PRO n 1 62 GLY n 1 63 VAL n 1 64 GLU n 1 65 LEU n 1 66 VAL n 1 67 GLU n 1 68 PRO n 1 69 THR n 1 70 SER n 1 71 GLY n 1 72 ASN n 1 73 THR n 1 74 GLY n 1 75 ILE n 1 76 ALA n 1 77 LEU n 1 78 ALA n 1 79 TYR n 1 80 VAL n 1 81 ALA n 1 82 ALA n 1 83 ALA n 1 84 ARG n 1 85 GLY n 1 86 TYR n 1 87 LYS n 1 88 LEU n 1 89 THR n 1 90 LEU n 1 91 THR n 1 92 MET n 1 93 PRO n 1 94 GLU n 1 95 THR n 1 96 MET n 1 97 SER n 1 98 ILE n 1 99 GLU n 1 100 ARG n 1 101 ARG n 1 102 LYS n 1 103 LEU n 1 104 LEU n 1 105 LYS n 1 106 ALA n 1 107 LEU n 1 108 GLY n 1 109 ALA n 1 110 ASN n 1 111 LEU n 1 112 VAL n 1 113 LEU n 1 114 THR n 1 115 GLU n 1 116 GLY n 1 117 ALA n 1 118 LYS n 1 119 GLY n 1 120 MET n 1 121 LYS n 1 122 GLY n 1 123 ALA n 1 124 ILE n 1 125 GLN n 1 126 LYS n 1 127 ALA n 1 128 GLU n 1 129 GLU n 1 130 ILE n 1 131 VAL n 1 132 ALA n 1 133 SER n 1 134 ASN n 1 135 PRO n 1 136 GLU n 1 137 LYS n 1 138 TYR n 1 139 LEU n 1 140 LEU n 1 141 LEU n 1 142 GLN n 1 143 GLN n 1 144 PHE n 1 145 SER n 1 146 ASN n 1 147 PRO n 1 148 ALA n 1 149 ASN n 1 150 PRO n 1 151 GLU n 1 152 ILE n 1 153 HIS n 1 154 GLU n 1 155 LYS n 1 156 THR n 1 157 THR n 1 158 GLY n 1 159 PRO n 1 160 GLU n 1 161 ILE n 1 162 TRP n 1 163 GLU n 1 164 ASP n 1 165 THR n 1 166 ASP n 1 167 GLY n 1 168 GLN n 1 169 VAL n 1 170 ASP n 1 171 VAL n 1 172 PHE n 1 173 ILE n 1 174 ALA n 1 175 GLY n 1 176 VAL n 1 177 GLY n 1 178 THR n 1 179 GLY n 1 180 GLY n 1 181 THR n 1 182 LEU n 1 183 THR n 1 184 GLY n 1 185 VAL n 1 186 SER n 1 187 ARG n 1 188 TYR n 1 189 ILE n 1 190 LYS n 1 191 GLY n 1 192 THR n 1 193 LYS n 1 194 GLY n 1 195 LYS n 1 196 THR n 1 197 ASP n 1 198 LEU n 1 199 ILE n 1 200 SER n 1 201 VAL n 1 202 ALA n 1 203 VAL n 1 204 GLU n 1 205 PRO n 1 206 THR n 1 207 ASP n 1 208 SER n 1 209 PRO n 1 210 VAL n 1 211 ILE n 1 212 ALA n 1 213 GLN n 1 214 ALA n 1 215 LEU n 1 216 ALA n 1 217 GLY n 1 218 GLU n 1 219 GLU n 1 220 ILE n 1 221 LYS n 1 222 PRO n 1 223 GLY n 1 224 PRO n 1 225 HIS n 1 226 LYS n 1 227 ILE n 1 228 GLN n 1 229 GLY n 1 230 ILE n 1 231 GLY n 1 232 ALA n 1 233 GLY n 1 234 PHE n 1 235 ILE n 1 236 PRO n 1 237 ALA n 1 238 ASN n 1 239 LEU n 1 240 ASP n 1 241 LEU n 1 242 LYS n 1 243 LEU n 1 244 VAL n 1 245 ASP n 1 246 LYS n 1 247 VAL n 1 248 ILE n 1 249 GLY n 1 250 ILE n 1 251 THR n 1 252 ASN n 1 253 GLU n 1 254 GLU n 1 255 ALA n 1 256 ILE n 1 257 SER n 1 258 THR n 1 259 ALA n 1 260 ARG n 1 261 ARG n 1 262 LEU n 1 263 MET n 1 264 GLU n 1 265 GLU n 1 266 GLU n 1 267 GLY n 1 268 ILE n 1 269 LEU n 1 270 ALA n 1 271 GLY n 1 272 ILE n 1 273 SER n 1 274 SER n 1 275 GLY n 1 276 ALA n 1 277 ALA n 1 278 VAL n 1 279 ALA n 1 280 ALA n 1 281 ALA n 1 282 LEU n 1 283 LYS n 1 284 LEU n 1 285 GLN n 1 286 GLU n 1 287 ASP n 1 288 GLU n 1 289 SER n 1 290 PHE n 1 291 THR n 1 292 ASN n 1 293 LYS n 1 294 ASN n 1 295 ILE n 1 296 VAL n 1 297 VAL n 1 298 ILE n 1 299 LEU n 1 300 PRO n 1 301 SER n 1 302 SER n 1 303 GLY n 1 304 GLU n 1 305 ARG n 1 306 TYR n 1 307 LEU n 1 308 SER n 1 309 THR n 1 310 ALA n 1 311 LEU n 1 312 PHE n 1 313 ALA n 1 314 ASP n 1 315 LEU n 1 316 PHE n 1 317 THR n 1 318 GLU n 1 319 LYS n 1 320 GLU n 1 321 LEU n 1 322 GLN n 1 323 GLN n 2 1 MET n 2 2 HIS n 2 3 HIS n 2 4 HIS n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 VAL n 2 9 GLU n 2 10 ASN n 2 11 ASN n 2 12 ALA n 2 13 LEU n 2 14 SER n 2 15 LEU n 2 16 VAL n 2 17 ALA n 2 18 ARG n 2 19 GLY n 2 20 CYS n 2 21 ALA n 2 22 VAL n 2 23 ALA n 2 24 ALA n 2 25 PRO n 2 26 CYS n 2 27 ARG n 2 28 THR n 2 29 LYS n 2 30 VAL n 2 31 ALA n 2 32 GLU n 2 33 GLN n 2 34 LEU n 2 35 LEU n 2 36 GLU n 2 37 ILE n 2 38 GLY n 2 39 ALA n 2 40 LYS n 2 41 ALA n 2 42 GLY n 2 43 MET n 2 44 ALA n 2 45 GLY n 2 46 LEU n 2 47 ALA n 2 48 GLY n 2 49 ALA n 2 50 ALA n 2 51 VAL n 2 52 LYS n 2 53 ASP n 2 54 MET n 2 55 ALA n 2 56 ASP n 2 57 ARG n 2 58 MET n 2 59 THR n 2 60 SER n 2 61 ASP n 2 62 GLU n 2 63 LEU n 2 64 GLU n 2 65 HIS n 2 66 LEU n 2 67 ILE n 2 68 THR n 2 69 LEU n 2 70 GLN n 2 71 MET n 2 72 MET n 2 73 GLY n 2 74 ASN n 2 75 ASP n 2 76 GLU n 2 77 ILE n 2 78 THR n 2 79 THR n 2 80 LYS n 2 81 TYR n 2 82 LEU n 2 83 SER n 2 84 SER n 2 85 LEU n 2 86 HIS n 2 87 ASP n 2 88 LYS n 2 89 TYR n 2 90 GLY n 2 91 SER n 2 92 GLY n 2 93 ALA n 2 94 ALA n 2 95 SER n 2 96 ASN n 2 97 PRO n 2 98 ASN n 2 99 ILE n 2 100 GLY n 2 101 LYS n 2 102 ASP n 2 103 LEU n 2 104 THR n 2 105 ASP n 2 106 ALA n 2 107 GLU n 2 108 LYS n 2 109 VAL n 2 110 GLU n 2 111 LEU n 2 112 GLY n 2 113 GLY n 2 114 SER n 2 115 GLY n 2 116 SER n 2 117 GLY n 2 118 THR n 2 119 GLY n 2 120 THR n 2 121 PRO n 2 122 PRO n 2 123 PRO n 2 124 SER n 2 125 GLU n 2 126 ASN n 2 127 ASP n 2 128 PRO n 2 129 LYS n 2 130 GLN n 2 131 GLN n 2 132 ASN n 2 133 GLU n 2 134 LYS n 2 135 THR n 2 136 VAL n 2 137 ASP n 2 138 LYS n 2 139 LEU n 2 140 ASN n 2 141 GLN n 2 142 LYS n 2 143 GLN n 2 144 GLU n 2 145 SER n 2 146 ALA n 2 147 ILE n 2 148 LYS n 2 149 LYS n 2 150 ILE n 2 151 ASP n 2 152 ASN n 2 153 THR n 2 154 ILE n 2 155 LYS n 2 156 ASN n 2 157 ALA n 2 158 LEU n 2 159 LYS n 2 160 ASP n 2 161 HIS n 2 162 ASP n 2 163 ILE n 2 164 ILE n 2 165 GLY n 2 166 THR n 2 167 LEU n 2 168 LYS n 2 169 ASP n 2 170 MET n 2 171 ASP n 2 172 GLY n 2 173 LYS n 2 174 PRO n 2 175 VAL n 2 176 PRO n 2 177 LYS n 2 178 GLU n 2 179 ASN n 2 180 GLY n 2 181 GLY n 2 182 TYR n 2 183 TRP n 2 184 ASP n 2 185 ALA n 2 186 MET n 2 187 GLN n 2 188 GLU n 2 189 MET n 2 190 GLN n 2 191 ASN n 2 192 THR n 2 193 LEU n 2 194 ARG n 2 195 GLY n 2 196 LEU n 2 197 ARG n 2 198 ASN n 2 199 HIS n 2 200 ALA n 2 201 ASP n 2 202 THR n 2 203 LEU n 2 204 LYS n 2 205 ASN n 2 206 VAL n 2 207 ASN n 2 208 ASN n 2 209 PRO n 2 210 GLU n 2 211 ALA n 2 212 GLN n 2 213 ALA n 2 214 ALA n 2 215 TYR n 2 216 GLY n 2 217 ARG n 2 218 ALA n 2 219 THR n 2 220 ASP n 2 221 ALA n 2 222 ILE n 2 223 ASN n 2 224 LYS n 2 225 ILE n 2 226 GLU n 2 227 SER n 2 228 ALA n 2 229 LEU n 2 230 LYS n 2 231 GLY n 2 232 TYR n 2 233 GLY n 2 234 ILE n 3 1 A n 3 2 G n 3 3 G n 3 4 C n 3 5 U n 3 6 U n 3 7 G n 3 8 U n 3 9 A n 3 10 G n 3 11 C n 3 12 U n 3 13 C n 3 14 A n 3 15 G n 3 16 G n 3 17 U n 3 18 G n 3 19 G n 3 20 U n 3 21 U n 3 22 A n 3 23 G n 3 24 A n 3 25 G n 3 26 C n 3 27 G n 3 28 C n 3 29 A n 3 30 C n 3 31 C n 3 32 C n 3 33 C n 3 34 U n 3 35 G n 3 36 A n 3 37 U n 3 38 T6A n 3 39 A n 3 40 G n 3 41 G n 3 42 G n 3 43 U n 3 44 G n 3 45 A n 3 46 G n 3 47 G n 3 48 U n 3 49 C n 3 50 G n 3 51 G n 3 52 U n 3 53 G n 3 54 G n 3 55 U n 3 56 U n 3 57 C n 3 58 A n 3 59 A n 3 60 G n 3 61 U n 3 62 C n 3 63 C n 3 64 A n 3 65 C n 3 66 U n 3 67 C n 3 68 A n 3 69 G n 3 70 G n 3 71 C n 3 72 C n 3 73 U n 3 74 A n 3 75 C n 3 76 C n 3 77 A n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 323 ? ? 'cysK, Z3680, ECs3286' ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 234 ? ? 'cdiA, ECP_4580' ? ? ? ? ? ? 'Escherichia coli 536' 362663 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 77 ? ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? JM101tr ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LLP 'L-peptide linking' n '(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid' "N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE" 'C14 H22 N3 O7 P' 375.314 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 T6A 'RNA linking' n "N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL)CARBAMOYL]THREONINE-5'-MONOPHOSPHATE" "N-(NEBULARIN-6-YLCARBAMOYL)-L-THREONINE-5'-MONOPHOSPHATE" 'C15 H21 N6 O11 P' 492.335 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 2 SER GLY A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LLP 42 42 42 LLP LLP A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 HIS 153 153 153 HIS HIS A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 TRP 162 162 162 TRP TRP A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 LYS 190 190 190 LYS LYS A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ILE 220 220 220 ILE ILE A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 PRO 224 224 224 PRO PRO A . n A 1 225 HIS 225 225 225 HIS HIS A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 ILE 227 227 227 ILE ILE A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 ALA 232 232 232 ALA ALA A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 PHE 234 234 234 PHE PHE A . n A 1 235 ILE 235 235 235 ILE ILE A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 LEU 239 239 239 LEU LEU A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 LEU 241 241 241 LEU LEU A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 VAL 244 244 244 VAL VAL A . n A 1 245 ASP 245 245 245 ASP ASP A . n A 1 246 LYS 246 246 246 LYS LYS A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 ILE 250 250 250 ILE ILE A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 ASN 252 252 252 ASN ASN A . n A 1 253 GLU 253 253 253 GLU GLU A . n A 1 254 GLU 254 254 254 GLU GLU A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 THR 258 258 258 THR THR A . n A 1 259 ALA 259 259 259 ALA ALA A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 MET 263 263 263 MET MET A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 GLU 265 265 265 GLU GLU A . n A 1 266 GLU 266 266 266 GLU GLU A . n A 1 267 GLY 267 267 267 GLY GLY A . n A 1 268 ILE 268 268 268 ILE ILE A . n A 1 269 LEU 269 269 269 LEU LEU A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 GLY 271 271 271 GLY GLY A . n A 1 272 ILE 272 272 272 ILE ILE A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 SER 274 274 274 SER SER A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 ALA 276 276 276 ALA ALA A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 VAL 278 278 278 VAL VAL A . n A 1 279 ALA 279 279 279 ALA ALA A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 LYS 283 283 283 LYS LYS A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 GLN 285 285 285 GLN GLN A . n A 1 286 GLU 286 286 286 GLU GLU A . n A 1 287 ASP 287 287 287 ASP ASP A . n A 1 288 GLU 288 288 288 GLU GLU A . n A 1 289 SER 289 289 289 SER SER A . n A 1 290 PHE 290 290 290 PHE PHE A . n A 1 291 THR 291 291 291 THR THR A . n A 1 292 ASN 292 292 292 ASN ASN A . n A 1 293 LYS 293 293 293 LYS LYS A . n A 1 294 ASN 294 294 294 ASN ASN A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 VAL 297 297 297 VAL VAL A . n A 1 298 ILE 298 298 298 ILE ILE A . n A 1 299 LEU 299 299 299 LEU LEU A . n A 1 300 PRO 300 300 300 PRO PRO A . n A 1 301 SER 301 301 301 SER SER A . n A 1 302 SER 302 302 302 SER SER A . n A 1 303 GLY 303 303 303 GLY GLY A . n A 1 304 GLU 304 304 304 GLU GLU A . n A 1 305 ARG 305 305 305 ARG ARG A . n A 1 306 TYR 306 306 306 TYR TYR A . n A 1 307 LEU 307 307 307 LEU LEU A . n A 1 308 SER 308 308 308 SER SER A . n A 1 309 THR 309 309 309 THR THR A . n A 1 310 ALA 310 310 310 ALA ALA A . n A 1 311 LEU 311 311 311 LEU LEU A . n A 1 312 PHE 312 312 312 PHE PHE A . n A 1 313 ALA 313 313 313 ALA ALA A . n A 1 314 ASP 314 314 314 ASP ASP A . n A 1 315 LEU 315 315 ? ? ? A . n A 1 316 PHE 316 316 ? ? ? A . n A 1 317 THR 317 317 ? ? ? A . n A 1 318 GLU 318 318 ? ? ? A . n A 1 319 LYS 319 319 ? ? ? A . n A 1 320 GLU 320 320 ? ? ? A . n A 1 321 LEU 321 321 ? ? ? A . n A 1 322 GLN 322 322 ? ? ? A . n A 1 323 GLN 323 323 ? ? ? A . n B 2 1 MET 1 -6 ? ? ? B . n B 2 2 HIS 2 -5 ? ? ? B . n B 2 3 HIS 3 -4 ? ? ? B . n B 2 4 HIS 4 -3 ? ? ? B . n B 2 5 HIS 5 -2 ? ? ? B . n B 2 6 HIS 6 -1 ? ? ? B . n B 2 7 HIS 7 0 ? ? ? B . n B 2 8 VAL 8 1 ? ? ? B . n B 2 9 GLU 9 2 ? ? ? B . n B 2 10 ASN 10 3 ? ? ? B . n B 2 11 ASN 11 4 ? ? ? B . n B 2 12 ALA 12 5 ? ? ? B . n B 2 13 LEU 13 6 ? ? ? B . n B 2 14 SER 14 7 ? ? ? B . n B 2 15 LEU 15 8 ? ? ? B . n B 2 16 VAL 16 9 ? ? ? B . n B 2 17 ALA 17 10 ? ? ? B . n B 2 18 ARG 18 11 ? ? ? B . n B 2 19 GLY 19 12 ? ? ? B . n B 2 20 CYS 20 13 ? ? ? B . n B 2 21 ALA 21 14 ? ? ? B . n B 2 22 VAL 22 15 ? ? ? B . n B 2 23 ALA 23 16 ? ? ? B . n B 2 24 ALA 24 17 ? ? ? B . n B 2 25 PRO 25 18 ? ? ? B . n B 2 26 CYS 26 19 ? ? ? B . n B 2 27 ARG 27 20 ? ? ? B . n B 2 28 THR 28 21 ? ? ? B . n B 2 29 LYS 29 22 ? ? ? B . n B 2 30 VAL 30 23 ? ? ? B . n B 2 31 ALA 31 24 ? ? ? B . n B 2 32 GLU 32 25 ? ? ? B . n B 2 33 GLN 33 26 ? ? ? B . n B 2 34 LEU 34 27 ? ? ? B . n B 2 35 LEU 35 28 ? ? ? B . n B 2 36 GLU 36 29 ? ? ? B . n B 2 37 ILE 37 30 ? ? ? B . n B 2 38 GLY 38 31 ? ? ? B . n B 2 39 ALA 39 32 ? ? ? B . n B 2 40 LYS 40 33 ? ? ? B . n B 2 41 ALA 41 34 ? ? ? B . n B 2 42 GLY 42 35 ? ? ? B . n B 2 43 MET 43 36 ? ? ? B . n B 2 44 ALA 44 37 ? ? ? B . n B 2 45 GLY 45 38 ? ? ? B . n B 2 46 LEU 46 39 ? ? ? B . n B 2 47 ALA 47 40 ? ? ? B . n B 2 48 GLY 48 41 ? ? ? B . n B 2 49 ALA 49 42 ? ? ? B . n B 2 50 ALA 50 43 ? ? ? B . n B 2 51 VAL 51 44 ? ? ? B . n B 2 52 LYS 52 45 ? ? ? B . n B 2 53 ASP 53 46 ? ? ? B . n B 2 54 MET 54 47 ? ? ? B . n B 2 55 ALA 55 48 ? ? ? B . n B 2 56 ASP 56 49 ? ? ? B . n B 2 57 ARG 57 50 ? ? ? B . n B 2 58 MET 58 51 ? ? ? B . n B 2 59 THR 59 52 ? ? ? B . n B 2 60 SER 60 53 ? ? ? B . n B 2 61 ASP 61 54 ? ? ? B . n B 2 62 GLU 62 55 ? ? ? B . n B 2 63 LEU 63 56 ? ? ? B . n B 2 64 GLU 64 57 ? ? ? B . n B 2 65 HIS 65 58 ? ? ? B . n B 2 66 LEU 66 59 ? ? ? B . n B 2 67 ILE 67 60 ? ? ? B . n B 2 68 THR 68 61 ? ? ? B . n B 2 69 LEU 69 62 ? ? ? B . n B 2 70 GLN 70 63 ? ? ? B . n B 2 71 MET 71 64 ? ? ? B . n B 2 72 MET 72 65 ? ? ? B . n B 2 73 GLY 73 66 ? ? ? B . n B 2 74 ASN 74 67 ? ? ? B . n B 2 75 ASP 75 68 ? ? ? B . n B 2 76 GLU 76 69 ? ? ? B . n B 2 77 ILE 77 70 ? ? ? B . n B 2 78 THR 78 71 ? ? ? B . n B 2 79 THR 79 72 ? ? ? B . n B 2 80 LYS 80 73 ? ? ? B . n B 2 81 TYR 81 74 ? ? ? B . n B 2 82 LEU 82 75 ? ? ? B . n B 2 83 SER 83 76 ? ? ? B . n B 2 84 SER 84 77 ? ? ? B . n B 2 85 LEU 85 78 ? ? ? B . n B 2 86 HIS 86 79 ? ? ? B . n B 2 87 ASP 87 80 ? ? ? B . n B 2 88 LYS 88 81 ? ? ? B . n B 2 89 TYR 89 82 ? ? ? B . n B 2 90 GLY 90 83 ? ? ? B . n B 2 91 SER 91 84 ? ? ? B . n B 2 92 GLY 92 85 ? ? ? B . n B 2 93 ALA 93 86 ? ? ? B . n B 2 94 ALA 94 87 ? ? ? B . n B 2 95 SER 95 88 ? ? ? B . n B 2 96 ASN 96 89 ? ? ? B . n B 2 97 PRO 97 90 ? ? ? B . n B 2 98 ASN 98 91 ? ? ? B . n B 2 99 ILE 99 92 ? ? ? B . n B 2 100 GLY 100 93 ? ? ? B . n B 2 101 LYS 101 94 ? ? ? B . n B 2 102 ASP 102 95 ? ? ? B . n B 2 103 LEU 103 96 ? ? ? B . n B 2 104 THR 104 97 ? ? ? B . n B 2 105 ASP 105 98 ? ? ? B . n B 2 106 ALA 106 99 ? ? ? B . n B 2 107 GLU 107 100 ? ? ? B . n B 2 108 LYS 108 101 ? ? ? B . n B 2 109 VAL 109 102 ? ? ? B . n B 2 110 GLU 110 103 ? ? ? B . n B 2 111 LEU 111 104 ? ? ? B . n B 2 112 GLY 112 105 ? ? ? B . n B 2 113 GLY 113 106 ? ? ? B . n B 2 114 SER 114 107 ? ? ? B . n B 2 115 GLY 115 108 ? ? ? B . n B 2 116 SER 116 109 ? ? ? B . n B 2 117 GLY 117 110 ? ? ? B . n B 2 118 THR 118 111 ? ? ? B . n B 2 119 GLY 119 112 ? ? ? B . n B 2 120 THR 120 113 ? ? ? B . n B 2 121 PRO 121 114 ? ? ? B . n B 2 122 PRO 122 115 ? ? ? B . n B 2 123 PRO 123 116 ? ? ? B . n B 2 124 SER 124 117 ? ? ? B . n B 2 125 GLU 125 118 ? ? ? B . n B 2 126 ASN 126 119 ? ? ? B . n B 2 127 ASP 127 120 ? ? ? B . n B 2 128 PRO 128 121 ? ? ? B . n B 2 129 LYS 129 122 ? ? ? B . n B 2 130 GLN 130 123 ? ? ? B . n B 2 131 GLN 131 124 ? ? ? B . n B 2 132 ASN 132 125 ? ? ? B . n B 2 133 GLU 133 126 ? ? ? B . n B 2 134 LYS 134 127 127 LYS LYS B . n B 2 135 THR 135 128 128 THR THR B . n B 2 136 VAL 136 129 129 VAL VAL B . n B 2 137 ASP 137 130 130 ASP ASP B . n B 2 138 LYS 138 131 131 LYS LYS B . n B 2 139 LEU 139 132 132 LEU LEU B . n B 2 140 ASN 140 133 133 ASN ASN B . n B 2 141 GLN 141 134 134 GLN GLN B . n B 2 142 LYS 142 135 135 LYS LYS B . n B 2 143 GLN 143 136 136 GLN GLN B . n B 2 144 GLU 144 137 137 GLU GLU B . n B 2 145 SER 145 138 138 SER SER B . n B 2 146 ALA 146 139 139 ALA ALA B . n B 2 147 ILE 147 140 140 ILE ILE B . n B 2 148 LYS 148 141 141 LYS LYS B . n B 2 149 LYS 149 142 142 LYS LYS B . n B 2 150 ILE 150 143 143 ILE ILE B . n B 2 151 ASP 151 144 144 ASP ASP B . n B 2 152 ASN 152 145 145 ASN ASN B . n B 2 153 THR 153 146 146 THR THR B . n B 2 154 ILE 154 147 147 ILE ILE B . n B 2 155 LYS 155 148 148 LYS LYS B . n B 2 156 ASN 156 149 149 ASN ASN B . n B 2 157 ALA 157 150 150 ALA ALA B . n B 2 158 LEU 158 151 151 LEU LEU B . n B 2 159 LYS 159 152 152 LYS LYS B . n B 2 160 ASP 160 153 153 ASP ASP B . n B 2 161 HIS 161 154 154 HIS HIS B . n B 2 162 ASP 162 155 155 ASP ASP B . n B 2 163 ILE 163 156 156 ILE ILE B . n B 2 164 ILE 164 157 157 ILE ILE B . n B 2 165 GLY 165 158 158 GLY GLY B . n B 2 166 THR 166 159 159 THR THR B . n B 2 167 LEU 167 160 160 LEU LEU B . n B 2 168 LYS 168 161 161 LYS LYS B . n B 2 169 ASP 169 162 162 ASP ASP B . n B 2 170 MET 170 163 163 MET MET B . n B 2 171 ASP 171 164 164 ASP ASP B . n B 2 172 GLY 172 165 165 GLY GLY B . n B 2 173 LYS 173 166 166 LYS LYS B . n B 2 174 PRO 174 167 167 PRO PRO B . n B 2 175 VAL 175 168 168 VAL VAL B . n B 2 176 PRO 176 169 169 PRO PRO B . n B 2 177 LYS 177 170 170 LYS LYS B . n B 2 178 GLU 178 171 171 GLU GLU B . n B 2 179 ASN 179 172 172 ASN ASN B . n B 2 180 GLY 180 173 173 GLY GLY B . n B 2 181 GLY 181 174 174 GLY GLY B . n B 2 182 TYR 182 175 175 TYR TYR B . n B 2 183 TRP 183 176 176 TRP TRP B . n B 2 184 ASP 184 177 177 ASP ASP B . n B 2 185 ALA 185 178 178 ALA ALA B . n B 2 186 MET 186 179 179 MET MET B . n B 2 187 GLN 187 180 180 GLN GLN B . n B 2 188 GLU 188 181 181 GLU GLU B . n B 2 189 MET 189 182 182 MET MET B . n B 2 190 GLN 190 183 183 GLN GLN B . n B 2 191 ASN 191 184 184 ASN ASN B . n B 2 192 THR 192 185 185 THR THR B . n B 2 193 LEU 193 186 186 LEU LEU B . n B 2 194 ARG 194 187 187 ARG ARG B . n B 2 195 GLY 195 188 188 GLY GLY B . n B 2 196 LEU 196 189 189 LEU LEU B . n B 2 197 ARG 197 190 190 ARG ARG B . n B 2 198 ASN 198 191 191 ASN ASN B . n B 2 199 HIS 199 192 192 HIS HIS B . n B 2 200 ALA 200 193 193 ALA ALA B . n B 2 201 ASP 201 194 194 ASP ASP B . n B 2 202 THR 202 195 195 THR THR B . n B 2 203 LEU 203 196 196 LEU LEU B . n B 2 204 LYS 204 197 197 LYS LYS B . n B 2 205 ASN 205 198 198 ASN ASN B . n B 2 206 VAL 206 199 199 VAL VAL B . n B 2 207 ASN 207 200 200 ASN ASN B . n B 2 208 ASN 208 201 201 ASN ASN B . n B 2 209 PRO 209 202 202 PRO PRO B . n B 2 210 GLU 210 203 203 GLU GLU B . n B 2 211 ALA 211 204 204 ALA ALA B . n B 2 212 GLN 212 205 205 GLN GLN B . n B 2 213 ALA 213 206 206 ALA ALA B . n B 2 214 ALA 214 207 207 ALA ALA B . n B 2 215 TYR 215 208 208 TYR TYR B . n B 2 216 GLY 216 209 209 GLY GLY B . n B 2 217 ARG 217 210 210 ARG ARG B . n B 2 218 ALA 218 211 211 ALA ALA B . n B 2 219 THR 219 212 212 THR THR B . n B 2 220 ASP 220 213 213 ASP ASP B . n B 2 221 ALA 221 214 214 ALA ALA B . n B 2 222 ILE 222 215 215 ILE ILE B . n B 2 223 ASN 223 216 216 ASN ASN B . n B 2 224 LYS 224 217 217 LYS LYS B . n B 2 225 ILE 225 218 218 ILE ILE B . n B 2 226 GLU 226 219 219 GLU GLU B . n B 2 227 SER 227 220 220 SER SER B . n B 2 228 ALA 228 221 221 ALA ALA B . n B 2 229 LEU 229 222 222 LEU LEU B . n B 2 230 LYS 230 223 223 LYS LYS B . n B 2 231 GLY 231 224 224 GLY GLY B . n B 2 232 TYR 232 225 225 TYR TYR B . n B 2 233 GLY 233 226 226 GLY GLY B . n B 2 234 ILE 234 227 227 ILE ILE B . n C 3 1 A 1 1 1 A A C . n C 3 2 G 2 2 2 G G C . n C 3 3 G 3 3 3 G G C . n C 3 4 C 4 4 4 C C C . n C 3 5 U 5 5 5 U U C . n C 3 6 U 6 6 6 U U C . n C 3 7 G 7 7 7 G G C . n C 3 8 U 8 8 8 U U C . n C 3 9 A 9 9 9 A A C . n C 3 10 G 10 10 10 G G C . n C 3 11 C 11 11 11 C C C . n C 3 12 U 12 12 12 U U C . n C 3 13 C 13 13 13 C C C . n C 3 14 A 14 14 14 A A C . n C 3 15 G 15 15 15 G G C . n C 3 16 G 16 16 16 G G C . n C 3 17 U 17 17 17 U U C . n C 3 18 G 18 18 18 G G C . n C 3 19 G 19 19 19 G G C . n C 3 20 U 20 20 20 U U C . n C 3 21 U 21 21 21 U U C . n C 3 22 A 22 21 21 A A C A n C 3 23 G 23 22 22 G G C . n C 3 24 A 24 23 23 A A C . n C 3 25 G 25 24 24 G G C . n C 3 26 C 26 25 25 C C C . n C 3 27 G 27 26 26 G G C . n C 3 28 C 28 27 27 C C C . n C 3 29 A 29 28 28 A A C . n C 3 30 C 30 29 29 C C C . n C 3 31 C 31 30 30 C C C . n C 3 32 C 32 31 31 C C C . n C 3 33 C 33 32 32 C C C . n C 3 34 U 34 33 33 U U C . n C 3 35 G 35 34 34 G G C . n C 3 36 A 36 35 35 A A C . n C 3 37 U 37 36 36 U U C . n C 3 38 T6A 38 37 37 T6A T6A C . n C 3 39 A 39 38 38 A A C . n C 3 40 G 40 39 39 G G C . n C 3 41 G 41 40 40 G G C . n C 3 42 G 42 41 41 G G C . n C 3 43 U 43 42 42 U U C . n C 3 44 G 44 43 43 G G C . n C 3 45 A 45 44 44 A A C . n C 3 46 G 46 45 45 G G C . n C 3 47 G 47 46 46 G G C . n C 3 48 U 48 47 47 U U C . n C 3 49 C 49 48 48 C C C . n C 3 50 G 50 49 49 G G C . n C 3 51 G 51 50 50 G G C . n C 3 52 U 52 51 51 U U C . n C 3 53 G 53 52 52 G G C . n C 3 54 G 54 53 53 G G C . n C 3 55 U 55 54 54 U U C . n C 3 56 U 56 55 55 U U C . n C 3 57 C 57 56 56 C C C . n C 3 58 A 58 57 57 A A C . n C 3 59 A 59 58 58 A A C . n C 3 60 G 60 59 59 G G C . n C 3 61 U 61 60 60 U U C . n C 3 62 C 62 61 61 C C C . n C 3 63 C 63 62 62 C C C . n C 3 64 A 64 63 63 A A C . n C 3 65 C 65 64 64 C C C . n C 3 66 U 66 65 65 U U C . n C 3 67 C 67 66 66 C C C . n C 3 68 A 68 67 67 A A C . n C 3 69 G 69 68 68 G G C . n C 3 70 G 70 69 69 G G C . n C 3 71 C 71 70 70 C C C . n C 3 72 C 72 71 71 C C C . n C 3 73 U 73 72 72 U U C . n C 3 74 A 74 73 ? ? ? C . n C 3 75 C 75 74 ? ? ? C . n C 3 76 C 76 75 ? ? ? C . n C 3 77 A 77 76 ? ? ? C . n D 1 1 MET 1 1 ? ? ? E . n D 1 2 SER 2 2 2 SER GLY E . n D 1 3 LYS 3 3 3 LYS LYS E . n D 1 4 ILE 4 4 4 ILE ILE E . n D 1 5 PHE 5 5 5 PHE PHE E . n D 1 6 GLU 6 6 6 GLU GLU E . n D 1 7 ASP 7 7 7 ASP ASP E . n D 1 8 ASN 8 8 8 ASN ASN E . n D 1 9 SER 9 9 9 SER SER E . n D 1 10 LEU 10 10 10 LEU LEU E . n D 1 11 THR 11 11 11 THR THR E . n D 1 12 ILE 12 12 12 ILE ILE E . n D 1 13 GLY 13 13 13 GLY GLY E . n D 1 14 HIS 14 14 14 HIS HIS E . n D 1 15 THR 15 15 15 THR THR E . n D 1 16 PRO 16 16 16 PRO PRO E . n D 1 17 LEU 17 17 17 LEU LEU E . n D 1 18 VAL 18 18 18 VAL VAL E . n D 1 19 ARG 19 19 19 ARG ARG E . n D 1 20 LEU 20 20 20 LEU LEU E . n D 1 21 ASN 21 21 21 ASN ASN E . n D 1 22 ARG 22 22 22 ARG ARG E . n D 1 23 ILE 23 23 23 ILE ILE E . n D 1 24 GLY 24 24 24 GLY GLY E . n D 1 25 ASN 25 25 25 ASN ASN E . n D 1 26 GLY 26 26 26 GLY GLY E . n D 1 27 ARG 27 27 27 ARG ARG E . n D 1 28 ILE 28 28 28 ILE ILE E . n D 1 29 LEU 29 29 29 LEU LEU E . n D 1 30 ALA 30 30 30 ALA ALA E . n D 1 31 LYS 31 31 31 LYS LYS E . n D 1 32 VAL 32 32 32 VAL VAL E . n D 1 33 GLU 33 33 33 GLU GLU E . n D 1 34 SER 34 34 34 SER SER E . n D 1 35 ARG 35 35 35 ARG ARG E . n D 1 36 ASN 36 36 36 ASN ASN E . n D 1 37 PRO 37 37 37 PRO PRO E . n D 1 38 SER 38 38 38 SER SER E . n D 1 39 PHE 39 39 39 PHE PHE E . n D 1 40 SER 40 40 40 SER SER E . n D 1 41 VAL 41 41 41 VAL VAL E . n D 1 42 LLP 42 42 42 LLP LLP E . n D 1 43 CYS 43 43 43 CYS CYS E . n D 1 44 ARG 44 44 44 ARG ARG E . n D 1 45 ILE 45 45 45 ILE ILE E . n D 1 46 GLY 46 46 46 GLY GLY E . n D 1 47 ALA 47 47 47 ALA ALA E . n D 1 48 ASN 48 48 48 ASN ASN E . n D 1 49 MET 49 49 49 MET MET E . n D 1 50 ILE 50 50 50 ILE ILE E . n D 1 51 TRP 51 51 51 TRP TRP E . n D 1 52 ASP 52 52 52 ASP ASP E . n D 1 53 ALA 53 53 53 ALA ALA E . n D 1 54 GLU 54 54 54 GLU GLU E . n D 1 55 LYS 55 55 55 LYS LYS E . n D 1 56 ARG 56 56 56 ARG ARG E . n D 1 57 GLY 57 57 57 GLY GLY E . n D 1 58 VAL 58 58 58 VAL VAL E . n D 1 59 LEU 59 59 59 LEU LEU E . n D 1 60 LYS 60 60 60 LYS LYS E . n D 1 61 PRO 61 61 61 PRO PRO E . n D 1 62 GLY 62 62 62 GLY GLY E . n D 1 63 VAL 63 63 63 VAL VAL E . n D 1 64 GLU 64 64 64 GLU GLU E . n D 1 65 LEU 65 65 65 LEU LEU E . n D 1 66 VAL 66 66 66 VAL VAL E . n D 1 67 GLU 67 67 67 GLU GLU E . n D 1 68 PRO 68 68 68 PRO PRO E . n D 1 69 THR 69 69 69 THR THR E . n D 1 70 SER 70 70 70 SER SER E . n D 1 71 GLY 71 71 71 GLY GLY E . n D 1 72 ASN 72 72 72 ASN ASN E . n D 1 73 THR 73 73 73 THR THR E . n D 1 74 GLY 74 74 74 GLY GLY E . n D 1 75 ILE 75 75 75 ILE ILE E . n D 1 76 ALA 76 76 76 ALA ALA E . n D 1 77 LEU 77 77 77 LEU LEU E . n D 1 78 ALA 78 78 78 ALA ALA E . n D 1 79 TYR 79 79 79 TYR TYR E . n D 1 80 VAL 80 80 80 VAL VAL E . n D 1 81 ALA 81 81 81 ALA ALA E . n D 1 82 ALA 82 82 82 ALA ALA E . n D 1 83 ALA 83 83 83 ALA ALA E . n D 1 84 ARG 84 84 84 ARG ARG E . n D 1 85 GLY 85 85 85 GLY GLY E . n D 1 86 TYR 86 86 86 TYR TYR E . n D 1 87 LYS 87 87 87 LYS LYS E . n D 1 88 LEU 88 88 88 LEU LEU E . n D 1 89 THR 89 89 89 THR THR E . n D 1 90 LEU 90 90 90 LEU LEU E . n D 1 91 THR 91 91 91 THR THR E . n D 1 92 MET 92 92 92 MET MET E . n D 1 93 PRO 93 93 93 PRO PRO E . n D 1 94 GLU 94 94 94 GLU GLU E . n D 1 95 THR 95 95 95 THR THR E . n D 1 96 MET 96 96 96 MET MET E . n D 1 97 SER 97 97 97 SER SER E . n D 1 98 ILE 98 98 98 ILE ILE E . n D 1 99 GLU 99 99 99 GLU GLU E . n D 1 100 ARG 100 100 100 ARG ARG E . n D 1 101 ARG 101 101 101 ARG ARG E . n D 1 102 LYS 102 102 102 LYS LYS E . n D 1 103 LEU 103 103 103 LEU LEU E . n D 1 104 LEU 104 104 104 LEU LEU E . n D 1 105 LYS 105 105 105 LYS LYS E . n D 1 106 ALA 106 106 106 ALA ALA E . n D 1 107 LEU 107 107 107 LEU LEU E . n D 1 108 GLY 108 108 108 GLY GLY E . n D 1 109 ALA 109 109 109 ALA ALA E . n D 1 110 ASN 110 110 110 ASN ASN E . n D 1 111 LEU 111 111 111 LEU LEU E . n D 1 112 VAL 112 112 112 VAL VAL E . n D 1 113 LEU 113 113 113 LEU LEU E . n D 1 114 THR 114 114 114 THR THR E . n D 1 115 GLU 115 115 115 GLU GLU E . n D 1 116 GLY 116 116 116 GLY GLY E . n D 1 117 ALA 117 117 117 ALA ALA E . n D 1 118 LYS 118 118 118 LYS LYS E . n D 1 119 GLY 119 119 119 GLY GLY E . n D 1 120 MET 120 120 120 MET MET E . n D 1 121 LYS 121 121 121 LYS LYS E . n D 1 122 GLY 122 122 122 GLY GLY E . n D 1 123 ALA 123 123 123 ALA ALA E . n D 1 124 ILE 124 124 124 ILE ILE E . n D 1 125 GLN 125 125 125 GLN GLN E . n D 1 126 LYS 126 126 126 LYS LYS E . n D 1 127 ALA 127 127 127 ALA ALA E . n D 1 128 GLU 128 128 128 GLU GLU E . n D 1 129 GLU 129 129 129 GLU GLU E . n D 1 130 ILE 130 130 130 ILE ILE E . n D 1 131 VAL 131 131 131 VAL VAL E . n D 1 132 ALA 132 132 132 ALA ALA E . n D 1 133 SER 133 133 133 SER SER E . n D 1 134 ASN 134 134 134 ASN ASN E . n D 1 135 PRO 135 135 135 PRO PRO E . n D 1 136 GLU 136 136 136 GLU GLU E . n D 1 137 LYS 137 137 137 LYS LYS E . n D 1 138 TYR 138 138 138 TYR TYR E . n D 1 139 LEU 139 139 139 LEU LEU E . n D 1 140 LEU 140 140 140 LEU LEU E . n D 1 141 LEU 141 141 141 LEU LEU E . n D 1 142 GLN 142 142 142 GLN GLN E . n D 1 143 GLN 143 143 143 GLN GLN E . n D 1 144 PHE 144 144 144 PHE PHE E . n D 1 145 SER 145 145 145 SER SER E . n D 1 146 ASN 146 146 146 ASN ASN E . n D 1 147 PRO 147 147 147 PRO PRO E . n D 1 148 ALA 148 148 148 ALA ALA E . n D 1 149 ASN 149 149 149 ASN ASN E . n D 1 150 PRO 150 150 150 PRO PRO E . n D 1 151 GLU 151 151 151 GLU GLU E . n D 1 152 ILE 152 152 152 ILE ILE E . n D 1 153 HIS 153 153 153 HIS HIS E . n D 1 154 GLU 154 154 154 GLU GLU E . n D 1 155 LYS 155 155 155 LYS LYS E . n D 1 156 THR 156 156 156 THR THR E . n D 1 157 THR 157 157 157 THR THR E . n D 1 158 GLY 158 158 158 GLY GLY E . n D 1 159 PRO 159 159 159 PRO PRO E . n D 1 160 GLU 160 160 160 GLU GLU E . n D 1 161 ILE 161 161 161 ILE ILE E . n D 1 162 TRP 162 162 162 TRP TRP E . n D 1 163 GLU 163 163 163 GLU GLU E . n D 1 164 ASP 164 164 164 ASP ASP E . n D 1 165 THR 165 165 165 THR THR E . n D 1 166 ASP 166 166 166 ASP ASP E . n D 1 167 GLY 167 167 167 GLY GLY E . n D 1 168 GLN 168 168 168 GLN GLN E . n D 1 169 VAL 169 169 169 VAL VAL E . n D 1 170 ASP 170 170 170 ASP ASP E . n D 1 171 VAL 171 171 171 VAL VAL E . n D 1 172 PHE 172 172 172 PHE PHE E . n D 1 173 ILE 173 173 173 ILE ILE E . n D 1 174 ALA 174 174 174 ALA ALA E . n D 1 175 GLY 175 175 175 GLY GLY E . n D 1 176 VAL 176 176 176 VAL VAL E . n D 1 177 GLY 177 177 177 GLY GLY E . n D 1 178 THR 178 178 178 THR THR E . n D 1 179 GLY 179 179 179 GLY GLY E . n D 1 180 GLY 180 180 180 GLY GLY E . n D 1 181 THR 181 181 181 THR THR E . n D 1 182 LEU 182 182 182 LEU LEU E . n D 1 183 THR 183 183 183 THR THR E . n D 1 184 GLY 184 184 184 GLY GLY E . n D 1 185 VAL 185 185 185 VAL VAL E . n D 1 186 SER 186 186 186 SER SER E . n D 1 187 ARG 187 187 187 ARG ARG E . n D 1 188 TYR 188 188 188 TYR TYR E . n D 1 189 ILE 189 189 189 ILE ILE E . n D 1 190 LYS 190 190 190 LYS LYS E . n D 1 191 GLY 191 191 191 GLY GLY E . n D 1 192 THR 192 192 192 THR THR E . n D 1 193 LYS 193 193 193 LYS LYS E . n D 1 194 GLY 194 194 194 GLY GLY E . n D 1 195 LYS 195 195 195 LYS LYS E . n D 1 196 THR 196 196 196 THR THR E . n D 1 197 ASP 197 197 197 ASP ASP E . n D 1 198 LEU 198 198 198 LEU LEU E . n D 1 199 ILE 199 199 199 ILE ILE E . n D 1 200 SER 200 200 200 SER SER E . n D 1 201 VAL 201 201 201 VAL VAL E . n D 1 202 ALA 202 202 202 ALA ALA E . n D 1 203 VAL 203 203 203 VAL VAL E . n D 1 204 GLU 204 204 204 GLU GLU E . n D 1 205 PRO 205 205 205 PRO PRO E . n D 1 206 THR 206 206 206 THR THR E . n D 1 207 ASP 207 207 207 ASP ASP E . n D 1 208 SER 208 208 208 SER SER E . n D 1 209 PRO 209 209 209 PRO PRO E . n D 1 210 VAL 210 210 210 VAL VAL E . n D 1 211 ILE 211 211 211 ILE ILE E . n D 1 212 ALA 212 212 212 ALA ALA E . n D 1 213 GLN 213 213 213 GLN GLN E . n D 1 214 ALA 214 214 214 ALA ALA E . n D 1 215 LEU 215 215 215 LEU LEU E . n D 1 216 ALA 216 216 216 ALA ALA E . n D 1 217 GLY 217 217 217 GLY GLY E . n D 1 218 GLU 218 218 218 GLU GLU E . n D 1 219 GLU 219 219 219 GLU GLU E . n D 1 220 ILE 220 220 220 ILE ILE E . n D 1 221 LYS 221 221 221 LYS LYS E . n D 1 222 PRO 222 222 222 PRO PRO E . n D 1 223 GLY 223 223 223 GLY GLY E . n D 1 224 PRO 224 224 224 PRO PRO E . n D 1 225 HIS 225 225 225 HIS HIS E . n D 1 226 LYS 226 226 226 LYS LYS E . n D 1 227 ILE 227 227 227 ILE ILE E . n D 1 228 GLN 228 228 228 GLN GLN E . n D 1 229 GLY 229 229 229 GLY GLY E . n D 1 230 ILE 230 230 230 ILE ILE E . n D 1 231 GLY 231 231 231 GLY GLY E . n D 1 232 ALA 232 232 232 ALA ALA E . n D 1 233 GLY 233 233 233 GLY GLY E . n D 1 234 PHE 234 234 234 PHE PHE E . n D 1 235 ILE 235 235 235 ILE ILE E . n D 1 236 PRO 236 236 236 PRO PRO E . n D 1 237 ALA 237 237 237 ALA ALA E . n D 1 238 ASN 238 238 238 ASN ASN E . n D 1 239 LEU 239 239 239 LEU LEU E . n D 1 240 ASP 240 240 240 ASP ASP E . n D 1 241 LEU 241 241 241 LEU LEU E . n D 1 242 LYS 242 242 242 LYS LYS E . n D 1 243 LEU 243 243 243 LEU LEU E . n D 1 244 VAL 244 244 244 VAL VAL E . n D 1 245 ASP 245 245 245 ASP ASP E . n D 1 246 LYS 246 246 246 LYS LYS E . n D 1 247 VAL 247 247 247 VAL VAL E . n D 1 248 ILE 248 248 248 ILE ILE E . n D 1 249 GLY 249 249 249 GLY GLY E . n D 1 250 ILE 250 250 250 ILE ILE E . n D 1 251 THR 251 251 251 THR THR E . n D 1 252 ASN 252 252 252 ASN ASN E . n D 1 253 GLU 253 253 253 GLU GLU E . n D 1 254 GLU 254 254 254 GLU GLU E . n D 1 255 ALA 255 255 255 ALA ALA E . n D 1 256 ILE 256 256 256 ILE ILE E . n D 1 257 SER 257 257 257 SER SER E . n D 1 258 THR 258 258 258 THR THR E . n D 1 259 ALA 259 259 259 ALA ALA E . n D 1 260 ARG 260 260 260 ARG ARG E . n D 1 261 ARG 261 261 261 ARG ARG E . n D 1 262 LEU 262 262 262 LEU LEU E . n D 1 263 MET 263 263 263 MET MET E . n D 1 264 GLU 264 264 264 GLU GLU E . n D 1 265 GLU 265 265 265 GLU GLU E . n D 1 266 GLU 266 266 266 GLU GLU E . n D 1 267 GLY 267 267 267 GLY GLY E . n D 1 268 ILE 268 268 268 ILE ILE E . n D 1 269 LEU 269 269 269 LEU LEU E . n D 1 270 ALA 270 270 270 ALA ALA E . n D 1 271 GLY 271 271 271 GLY GLY E . n D 1 272 ILE 272 272 272 ILE ILE E . n D 1 273 SER 273 273 273 SER SER E . n D 1 274 SER 274 274 274 SER SER E . n D 1 275 GLY 275 275 275 GLY GLY E . n D 1 276 ALA 276 276 276 ALA ALA E . n D 1 277 ALA 277 277 277 ALA ALA E . n D 1 278 VAL 278 278 278 VAL VAL E . n D 1 279 ALA 279 279 279 ALA ALA E . n D 1 280 ALA 280 280 280 ALA ALA E . n D 1 281 ALA 281 281 281 ALA ALA E . n D 1 282 LEU 282 282 282 LEU LEU E . n D 1 283 LYS 283 283 283 LYS LYS E . n D 1 284 LEU 284 284 284 LEU LEU E . n D 1 285 GLN 285 285 285 GLN GLN E . n D 1 286 GLU 286 286 286 GLU GLU E . n D 1 287 ASP 287 287 287 ASP ASP E . n D 1 288 GLU 288 288 288 GLU GLU E . n D 1 289 SER 289 289 289 SER SER E . n D 1 290 PHE 290 290 290 PHE PHE E . n D 1 291 THR 291 291 291 THR THR E . n D 1 292 ASN 292 292 292 ASN ASN E . n D 1 293 LYS 293 293 293 LYS LYS E . n D 1 294 ASN 294 294 294 ASN ASN E . n D 1 295 ILE 295 295 295 ILE ILE E . n D 1 296 VAL 296 296 296 VAL VAL E . n D 1 297 VAL 297 297 297 VAL VAL E . n D 1 298 ILE 298 298 298 ILE ILE E . n D 1 299 LEU 299 299 299 LEU LEU E . n D 1 300 PRO 300 300 300 PRO PRO E . n D 1 301 SER 301 301 301 SER SER E . n D 1 302 SER 302 302 302 SER SER E . n D 1 303 GLY 303 303 303 GLY GLY E . n D 1 304 GLU 304 304 304 GLU GLU E . n D 1 305 ARG 305 305 305 ARG ARG E . n D 1 306 TYR 306 306 306 TYR TYR E . n D 1 307 LEU 307 307 307 LEU LEU E . n D 1 308 SER 308 308 308 SER SER E . n D 1 309 THR 309 309 309 THR THR E . n D 1 310 ALA 310 310 310 ALA ALA E . n D 1 311 LEU 311 311 311 LEU LEU E . n D 1 312 PHE 312 312 312 PHE PHE E . n D 1 313 ALA 313 313 313 ALA ALA E . n D 1 314 ASP 314 314 314 ASP ASP E . n D 1 315 LEU 315 315 315 LEU LEU E . n D 1 316 PHE 316 316 ? ? ? E . n D 1 317 THR 317 317 ? ? ? E . n D 1 318 GLU 318 318 ? ? ? E . n D 1 319 LYS 319 319 ? ? ? E . n D 1 320 GLU 320 320 ? ? ? E . n D 1 321 LEU 321 321 ? ? ? E . n D 1 322 GLN 322 322 ? ? ? E . n D 1 323 GLN 323 323 ? ? ? E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG 1 301 1 MG MG B . F 4 MG 1 101 77 MG MG C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 2 ? CB ? A SER 2 CB 2 1 Y 1 A SER 2 ? OG ? A SER 2 OG 3 1 Y 1 A ASP 314 ? CG ? A ASP 314 CG 4 1 Y 1 A ASP 314 ? OD1 ? A ASP 314 OD1 5 1 Y 1 A ASP 314 ? OD2 ? A ASP 314 OD2 6 1 Y 1 E SER 2 ? CB ? D SER 2 CB 7 1 Y 1 E SER 2 ? OG ? D SER 2 OG 8 1 Y 1 E ASP 314 ? CG ? D ASP 314 CG 9 1 Y 1 E ASP 314 ? OD1 ? D ASP 314 OD1 10 1 Y 1 E ASP 314 ? OD2 ? D ASP 314 OD2 11 1 Y 1 E LEU 315 ? CG ? D LEU 315 CG 12 1 Y 1 E LEU 315 ? CD1 ? D LEU 315 CD1 13 1 Y 1 E LEU 315 ? CD2 ? D LEU 315 CD2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8ZYD _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ZYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ZYD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ZYD _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 ? 7317 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.866 ? 10260 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 11.710 ? 2960 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.055 ? 1242 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.009 ? 1048 ? f_plane_restr ? ? # _struct.entry_id 8ZYD _struct.title 'Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ZYD _struct_keywords.text 'RNase, Complex, Contact-dependent growth inhibition, Toxin' _struct_keywords.pdbx_keywords TOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CYSK_ECO57 P0ABK6 ? 1 ;MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYV AAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLD LKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE LQQ ; 1 2 UNP CDIA_ECOL5 Q0T963 ? 2 ;VENNALSLVARGCAVAAPCRTKVAEQLLEIGAKAGMAGLAGAAVKDMADRMTSDELEHLITLQMMGNDEITTKYLSSLHD KYGSGAASNPNIGKDLTDAEKVELGGSGSGTGTPPPSENDPKQQNEKTVDKLNQKQESAIKKIDNTIKNALKDHDIIGTL KDMDGKPVPKENGGYWDHMQEMQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI ; 3016 3 GB CP053605.1 1845258627 ? 3 AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGUGGUUCAAGUCCACUCAGGCCUACCA 226702 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ZYD A 1 ? 323 ? P0ABK6 1 ? 323 ? 1 323 2 2 8ZYD B 8 ? 234 ? Q0T963 3016 ? 3242 ? 1 227 3 3 8ZYD C 1 ? 77 ? 1845258627 226702 ? 226778 ? 1 76 4 1 8ZYD E 1 ? 323 ? P0ABK6 1 ? 323 ? 1 323 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 8ZYD MET B 1 ? UNP Q0T963 ? ? 'initiating methionine' -6 1 2 8ZYD HIS B 2 ? UNP Q0T963 ? ? 'expression tag' -5 2 2 8ZYD HIS B 3 ? UNP Q0T963 ? ? 'expression tag' -4 3 2 8ZYD HIS B 4 ? UNP Q0T963 ? ? 'expression tag' -3 4 2 8ZYD HIS B 5 ? UNP Q0T963 ? ? 'expression tag' -2 5 2 8ZYD HIS B 6 ? UNP Q0T963 ? ? 'expression tag' -1 6 2 8ZYD HIS B 7 ? UNP Q0T963 ? ? 'expression tag' 0 7 2 8ZYD ALA B 185 ? UNP Q0T963 HIS 3193 conflict 178 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 7 ? ILE A 12 ? ASP A 7 ILE A 12 5 ? 6 HELX_P HELX_P2 AA2 LLP A 42 ? ARG A 56 ? LLP A 42 ARG A 56 1 ? 15 HELX_P HELX_P3 AA3 GLY A 71 ? GLY A 85 ? GLY A 71 GLY A 85 1 ? 15 HELX_P HELX_P4 AA4 SER A 97 ? ALA A 106 ? SER A 97 ALA A 106 1 ? 10 HELX_P HELX_P5 AA5 LYS A 118 ? ALA A 132 ? LYS A 118 ALA A 132 1 ? 15 HELX_P HELX_P6 AA6 PRO A 147 ? THR A 156 ? PRO A 147 THR A 156 1 ? 10 HELX_P HELX_P7 AA7 THR A 156 ? THR A 165 ? THR A 156 THR A 165 1 ? 10 HELX_P HELX_P8 AA8 GLY A 179 ? GLY A 191 ? GLY A 179 GLY A 191 1 ? 13 HELX_P HELX_P9 AA9 PRO A 209 ? ALA A 216 ? PRO A 209 ALA A 216 1 ? 8 HELX_P HELX_P10 AB1 THR A 251 ? GLU A 265 ? THR A 251 GLU A 265 1 ? 15 HELX_P HELX_P11 AB2 GLY A 271 ? GLU A 286 ? GLY A 271 GLU A 286 1 ? 16 HELX_P HELX_P12 AB3 GLY A 303 ? LEU A 307 ? GLY A 303 LEU A 307 5 ? 5 HELX_P HELX_P13 AB4 LYS B 142 ? LEU B 158 ? LYS B 135 LEU B 151 1 ? 17 HELX_P HELX_P14 AB5 LYS B 159 ? ASP B 171 ? LYS B 152 ASP B 164 1 ? 13 HELX_P HELX_P15 AB6 ASP B 184 ? LEU B 203 ? ASP B 177 LEU B 196 1 ? 20 HELX_P HELX_P16 AB7 ASN B 208 ? LYS B 230 ? ASN B 201 LYS B 223 1 ? 23 HELX_P HELX_P17 AB8 ASP D 7 ? ILE D 12 ? ASP E 7 ILE E 12 5 ? 6 HELX_P HELX_P18 AB9 VAL D 41 ? ARG D 56 ? VAL E 41 ARG E 56 1 ? 16 HELX_P HELX_P19 AC1 GLY D 71 ? GLY D 85 ? GLY E 71 GLY E 85 1 ? 15 HELX_P HELX_P20 AC2 SER D 97 ? LEU D 107 ? SER E 97 LEU E 107 1 ? 11 HELX_P HELX_P21 AC3 GLY D 119 ? ALA D 132 ? GLY E 119 ALA E 132 1 ? 14 HELX_P HELX_P22 AC4 PRO D 150 ? THR D 156 ? PRO E 150 THR E 156 1 ? 7 HELX_P HELX_P23 AC5 THR D 156 ? ASP D 166 ? THR E 156 ASP E 166 1 ? 11 HELX_P HELX_P24 AC6 GLY D 180 ? LYS D 190 ? GLY E 180 LYS E 190 1 ? 11 HELX_P HELX_P25 AC7 PRO D 209 ? ALA D 216 ? PRO E 209 ALA E 216 1 ? 8 HELX_P HELX_P26 AC8 THR D 251 ? GLU D 265 ? THR E 251 GLU E 265 1 ? 15 HELX_P HELX_P27 AC9 GLY D 271 ? GLN D 285 ? GLY E 271 GLN E 285 1 ? 15 HELX_P HELX_P28 AD1 GLU D 286 ? THR D 291 ? GLU E 286 THR E 291 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 41 C ? ? ? 1_555 A LLP 42 N ? ? A VAL 41 A LLP 42 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A LLP 42 C ? ? ? 1_555 A CYS 43 N ? ? A LLP 42 A CYS 43 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? C U 37 "O3'" ? ? ? 1_555 C T6A 38 P ? ? C U 36 C T6A 37 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale4 covale both ? C T6A 38 "O3'" ? ? ? 1_555 C A 39 P ? ? C T6A 37 C A 38 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? D VAL 41 C ? ? ? 1_555 D LLP 42 N ? ? E VAL 41 E LLP 42 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? D LLP 42 C ? ? ? 1_555 D CYS 43 N ? ? E LLP 42 E CYS 43 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? B ASP 162 OD1 ? ? ? 1_555 E MG . MG ? ? B ASP 155 B MG 301 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc2 metalc ? ? B ASP 162 OD2 ? ? ? 1_555 E MG . MG ? ? B ASP 155 B MG 301 1_555 ? ? ? ? ? ? ? 2.416 ? ? hydrog1 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 72 N3 ? ? C G 2 C C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 72 O2 ? ? C G 2 C C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 72 N4 ? ? C G 2 C C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 71 N3 ? ? C G 3 C C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 71 O2 ? ? C G 3 C C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 71 N4 ? ? C G 3 C C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 72 N4 ? ? C G 3 C C 71 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog8 hydrog ? ? C C 4 N3 ? ? ? 1_555 C G 70 N1 ? ? C C 4 C G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C C 4 N4 ? ? ? 1_555 C G 70 O6 ? ? C C 4 C G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C C 4 O2 ? ? ? 1_555 C G 70 N2 ? ? C C 4 C G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C U 5 N3 ? ? ? 1_555 C G 69 O6 ? ? C U 5 C G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? C U 5 O2 ? ? ? 1_555 C G 69 N1 ? ? C U 5 C G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? C U 6 N3 ? ? ? 1_555 C A 68 N1 ? ? C U 6 C A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C U 6 O4 ? ? ? 1_555 C A 68 N6 ? ? C U 6 C A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 7 N1 ? ? ? 1_555 C C 67 N3 ? ? C G 7 C C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C G 7 N2 ? ? ? 1_555 C C 67 O2 ? ? C G 7 C C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C G 7 O6 ? ? ? 1_555 C C 67 N4 ? ? C G 7 C C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C U 8 N3 ? ? ? 1_555 C A 14 N7 ? ? C U 8 C A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? C U 8 O2 ? ? ? 1_555 C A 14 N6 ? ? C U 8 C A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? C A 9 N6 ? ? ? 1_555 C A 24 N7 ? ? C A 9 C A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog21 hydrog ? ? C A 9 N7 ? ? ? 1_555 C A 24 N6 ? ? C A 9 C A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? C G 10 N1 ? ? ? 1_555 C C 26 N3 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 10 N2 ? ? ? 1_555 C C 26 O2 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C G 10 O6 ? ? ? 1_555 C C 26 N4 ? ? C G 10 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 10 O6 ? ? ? 1_555 C G 46 N2 ? ? C G 10 C G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? C C 11 N3 ? ? ? 1_555 C G 25 N1 ? ? C C 11 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 11 N4 ? ? ? 1_555 C G 25 O6 ? ? C C 11 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 11 O2 ? ? ? 1_555 C G 25 N2 ? ? C C 11 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C U 12 N3 ? ? ? 1_555 C A 24 N1 ? ? C U 12 C A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C U 12 O4 ? ? ? 1_555 C A 24 N6 ? ? C U 12 C A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 13 N3 ? ? ? 1_555 C G 23 N1 ? ? C C 13 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 13 N4 ? ? ? 1_555 C G 23 O6 ? ? C C 13 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 13 O2 ? ? ? 1_555 C G 23 N2 ? ? C C 13 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 15 N1 ? ? ? 1_555 C C 49 O2 ? ? C G 15 C C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? C G 15 N2 ? ? ? 1_555 C C 49 N3 ? ? C G 15 C C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? C G 18 N1 ? ? ? 1_555 C U 56 O2 ? ? C G 18 C U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? C G 19 N1 ? ? ? 1_555 C C 57 O2 ? ? C G 19 C C 56 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog38 hydrog ? ? C G 23 N7 ? ? ? 1_555 C G 47 N1 ? ? C G 22 C G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog39 hydrog ? ? C G 23 O6 ? ? ? 1_555 C G 47 N2 ? ? C G 22 C G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog40 hydrog ? ? C G 27 N1 ? ? ? 1_555 C A 45 N1 ? ? C G 26 C A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog41 hydrog ? ? C G 27 O6 ? ? ? 1_555 C A 45 N6 ? ? C G 26 C A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? C C 28 N3 ? ? ? 1_555 C G 44 N1 ? ? C C 27 C G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 28 N4 ? ? ? 1_555 C G 44 O6 ? ? C C 27 C G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 28 O2 ? ? ? 1_555 C G 44 N2 ? ? C C 27 C G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C A 29 N1 ? ? ? 1_555 C U 43 N3 ? ? C A 28 C U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C A 29 N6 ? ? ? 1_555 C U 43 O4 ? ? C A 28 C U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 30 N3 ? ? ? 1_555 C G 42 N1 ? ? C C 29 C G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 30 N4 ? ? ? 1_555 C G 42 O6 ? ? C C 29 C G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 30 O2 ? ? ? 1_555 C G 42 N2 ? ? C C 29 C G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 31 N3 ? ? ? 1_555 C G 41 N1 ? ? C C 30 C G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 31 N4 ? ? ? 1_555 C G 41 O6 ? ? C C 30 C G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 31 O2 ? ? ? 1_555 C G 41 N2 ? ? C C 30 C G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 32 N3 ? ? ? 1_555 C G 40 N2 ? ? C C 31 C G 39 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog54 hydrog ? ? C C 33 O2 ? ? ? 1_555 C A 39 N6 ? ? C C 32 C A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog55 hydrog ? ? C G 50 N1 ? ? ? 1_555 C U 66 O4 ? ? C G 49 C U 65 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog56 hydrog ? ? C G 50 O6 ? ? ? 1_555 C U 66 N3 ? ? C G 49 C U 65 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog57 hydrog ? ? C G 51 N1 ? ? ? 1_555 C C 65 N3 ? ? C G 50 C C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 51 N2 ? ? ? 1_555 C C 65 O2 ? ? C G 50 C C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 51 O6 ? ? ? 1_555 C C 65 N4 ? ? C G 50 C C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C U 52 N3 ? ? ? 1_555 C A 64 N1 ? ? C U 51 C A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C U 52 O4 ? ? ? 1_555 C A 64 N6 ? ? C U 51 C A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 53 N1 ? ? ? 1_555 C C 63 N3 ? ? C G 52 C C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 53 N2 ? ? ? 1_555 C C 63 O2 ? ? C G 52 C C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 53 O6 ? ? ? 1_555 C C 63 N4 ? ? C G 52 C C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 54 N1 ? ? ? 1_555 C C 62 N3 ? ? C G 53 C C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 54 N2 ? ? ? 1_555 C C 62 O2 ? ? C G 53 C C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C G 54 O6 ? ? ? 1_555 C C 62 N4 ? ? C G 53 C C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C U 55 N3 ? ? ? 1_555 C A 59 N7 ? ? C U 54 C A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog69 hydrog ? ? C U 55 O2 ? ? ? 1_555 C A 59 N6 ? ? C U 54 C A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OD1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id ASP _pdbx_struct_conn_angle.ptnr1_label_seq_id 162 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr1_auth_seq_id 155 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 301 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OD2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id ASP _pdbx_struct_conn_angle.ptnr3_label_seq_id 162 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id ASP _pdbx_struct_conn_angle.ptnr3_auth_seq_id 155 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 56.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 6 ? AA3 ? 4 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 4 ? PHE A 5 ? ILE A 4 PHE A 5 AA1 2 LEU D 17 ? ARG D 19 ? LEU E 17 ARG E 19 AA1 3 ILE D 28 ? VAL D 32 ? ILE E 28 VAL E 32 AA1 4 ILE D 295 ? LEU D 299 ? ILE E 295 LEU E 299 AA1 5 VAL D 171 ? GLY D 175 ? VAL E 171 GLY E 175 AA1 6 ILE D 199 ? PRO D 205 ? ILE E 199 PRO E 205 AA1 7 LYS D 246 ? ILE D 250 ? LYS E 246 ILE E 250 AA2 1 LEU A 17 ? ARG A 19 ? LEU A 17 ARG A 19 AA2 2 ILE A 28 ? VAL A 32 ? ILE A 28 VAL A 32 AA2 3 ILE A 295 ? LEU A 299 ? ILE A 295 LEU A 299 AA2 4 VAL A 171 ? GLY A 175 ? VAL A 171 GLY A 175 AA2 5 ILE A 199 ? PRO A 205 ? ILE A 199 PRO A 205 AA2 6 LYS A 246 ? ILE A 250 ? LYS A 246 ILE A 250 AA3 1 ASN A 110 ? THR A 114 ? ASN A 110 THR A 114 AA3 2 LEU A 88 ? PRO A 93 ? LEU A 88 PRO A 93 AA3 3 GLU A 64 ? PRO A 68 ? GLU A 64 PRO A 68 AA3 4 TYR A 138 ? LEU A 140 ? TYR A 138 LEU A 140 AA4 1 LEU D 65 ? GLU D 67 ? LEU E 65 GLU E 67 AA4 2 LEU D 88 ? PRO D 93 ? LEU E 88 PRO E 93 AA4 3 ALA D 109 ? THR D 114 ? ALA E 109 THR E 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 5 ? N PHE A 5 O ARG D 19 ? O ARG E 19 AA1 2 3 N VAL D 18 ? N VAL E 18 O ALA D 30 ? O ALA E 30 AA1 3 4 N LEU D 29 ? N LEU E 29 O ILE D 295 ? O ILE E 295 AA1 4 5 O VAL D 296 ? O VAL E 296 N VAL D 171 ? N VAL E 171 AA1 5 6 N PHE D 172 ? N PHE E 172 O ILE D 199 ? O ILE E 199 AA1 6 7 N ALA D 202 ? N ALA E 202 O ILE D 248 ? O ILE E 248 AA2 1 2 N VAL A 18 ? N VAL A 18 O ALA A 30 ? O ALA A 30 AA2 2 3 N LEU A 29 ? N LEU A 29 O ILE A 295 ? O ILE A 295 AA2 3 4 O VAL A 296 ? O VAL A 296 N ILE A 173 ? N ILE A 173 AA2 4 5 N PHE A 172 ? N PHE A 172 O VAL A 201 ? O VAL A 201 AA2 5 6 N ALA A 202 ? N ALA A 202 O LYS A 246 ? O LYS A 246 AA3 1 2 O THR A 114 ? O THR A 114 N MET A 92 ? N MET A 92 AA3 2 3 O THR A 89 ? O THR A 89 N LEU A 65 ? N LEU A 65 AA3 3 4 N VAL A 66 ? N VAL A 66 O LEU A 139 ? O LEU A 139 AA4 1 2 N LEU D 65 ? N LEU E 65 O THR D 89 ? O THR E 89 AA4 2 3 N LEU D 90 ? N LEU E 90 O VAL D 112 ? O VAL E 112 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 35 ? ? -93.22 50.96 2 1 TYR A 306 ? ? -105.17 40.10 3 1 LEU B 151 ? ? -100.59 63.04 4 1 ASN B 172 ? ? -142.36 13.75 5 1 THR E 95 ? ? -90.73 30.15 6 1 GLN E 142 ? ? 60.07 67.27 7 1 TYR E 306 ? ? -99.22 35.88 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A LLP 42 A LLP 42 ? LYS 'modified residue' 2 C T6A 38 C T6A 37 ? A 'modified residue' 3 D LLP 42 E LLP 42 ? LYS 'modified residue' # _pdbx_entry_details.entry_id 8ZYD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8ZYD _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 5J43 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 5J43 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8ZYD _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.04 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 103127 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '25mM Tris-HCl,50mM NaCl,2mM MgCl2, 10mM 2-mercaptoethanol' _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'CysK in complex with CdiA-CT and tRNA.' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2,3 # _em_image_scans.entry_id 8ZYD _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 5760 _em_image_scans.dimension_width 4092 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8ZYD _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8ZYD _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8ZYD _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8ZYD _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LEU 315 ? A LEU 315 3 1 Y 1 A PHE 316 ? A PHE 316 4 1 Y 1 A THR 317 ? A THR 317 5 1 Y 1 A GLU 318 ? A GLU 318 6 1 Y 1 A LYS 319 ? A LYS 319 7 1 Y 1 A GLU 320 ? A GLU 320 8 1 Y 1 A LEU 321 ? A LEU 321 9 1 Y 1 A GLN 322 ? A GLN 322 10 1 Y 1 A GLN 323 ? A GLN 323 11 1 Y 1 B MET -6 ? B MET 1 12 1 Y 1 B HIS -5 ? B HIS 2 13 1 Y 1 B HIS -4 ? B HIS 3 14 1 Y 1 B HIS -3 ? B HIS 4 15 1 Y 1 B HIS -2 ? B HIS 5 16 1 Y 1 B HIS -1 ? B HIS 6 17 1 Y 1 B HIS 0 ? B HIS 7 18 1 Y 1 B VAL 1 ? B VAL 8 19 1 Y 1 B GLU 2 ? B GLU 9 20 1 Y 1 B ASN 3 ? B ASN 10 21 1 Y 1 B ASN 4 ? B ASN 11 22 1 Y 1 B ALA 5 ? B ALA 12 23 1 Y 1 B LEU 6 ? B LEU 13 24 1 Y 1 B SER 7 ? B SER 14 25 1 Y 1 B LEU 8 ? B LEU 15 26 1 Y 1 B VAL 9 ? B VAL 16 27 1 Y 1 B ALA 10 ? B ALA 17 28 1 Y 1 B ARG 11 ? B ARG 18 29 1 Y 1 B GLY 12 ? B GLY 19 30 1 Y 1 B CYS 13 ? B CYS 20 31 1 Y 1 B ALA 14 ? B ALA 21 32 1 Y 1 B VAL 15 ? B VAL 22 33 1 Y 1 B ALA 16 ? B ALA 23 34 1 Y 1 B ALA 17 ? B ALA 24 35 1 Y 1 B PRO 18 ? B PRO 25 36 1 Y 1 B CYS 19 ? B CYS 26 37 1 Y 1 B ARG 20 ? B ARG 27 38 1 Y 1 B THR 21 ? B THR 28 39 1 Y 1 B LYS 22 ? B LYS 29 40 1 Y 1 B VAL 23 ? B VAL 30 41 1 Y 1 B ALA 24 ? B ALA 31 42 1 Y 1 B GLU 25 ? B GLU 32 43 1 Y 1 B GLN 26 ? B GLN 33 44 1 Y 1 B LEU 27 ? B LEU 34 45 1 Y 1 B LEU 28 ? B LEU 35 46 1 Y 1 B GLU 29 ? B GLU 36 47 1 Y 1 B ILE 30 ? B ILE 37 48 1 Y 1 B GLY 31 ? B GLY 38 49 1 Y 1 B ALA 32 ? B ALA 39 50 1 Y 1 B LYS 33 ? B LYS 40 51 1 Y 1 B ALA 34 ? B ALA 41 52 1 Y 1 B GLY 35 ? B GLY 42 53 1 Y 1 B MET 36 ? B MET 43 54 1 Y 1 B ALA 37 ? B ALA 44 55 1 Y 1 B GLY 38 ? B GLY 45 56 1 Y 1 B LEU 39 ? B LEU 46 57 1 Y 1 B ALA 40 ? B ALA 47 58 1 Y 1 B GLY 41 ? B GLY 48 59 1 Y 1 B ALA 42 ? B ALA 49 60 1 Y 1 B ALA 43 ? B ALA 50 61 1 Y 1 B VAL 44 ? B VAL 51 62 1 Y 1 B LYS 45 ? B LYS 52 63 1 Y 1 B ASP 46 ? B ASP 53 64 1 Y 1 B MET 47 ? B MET 54 65 1 Y 1 B ALA 48 ? B ALA 55 66 1 Y 1 B ASP 49 ? B ASP 56 67 1 Y 1 B ARG 50 ? B ARG 57 68 1 Y 1 B MET 51 ? B MET 58 69 1 Y 1 B THR 52 ? B THR 59 70 1 Y 1 B SER 53 ? B SER 60 71 1 Y 1 B ASP 54 ? B ASP 61 72 1 Y 1 B GLU 55 ? B GLU 62 73 1 Y 1 B LEU 56 ? B LEU 63 74 1 Y 1 B GLU 57 ? B GLU 64 75 1 Y 1 B HIS 58 ? B HIS 65 76 1 Y 1 B LEU 59 ? B LEU 66 77 1 Y 1 B ILE 60 ? B ILE 67 78 1 Y 1 B THR 61 ? B THR 68 79 1 Y 1 B LEU 62 ? B LEU 69 80 1 Y 1 B GLN 63 ? B GLN 70 81 1 Y 1 B MET 64 ? B MET 71 82 1 Y 1 B MET 65 ? B MET 72 83 1 Y 1 B GLY 66 ? B GLY 73 84 1 Y 1 B ASN 67 ? B ASN 74 85 1 Y 1 B ASP 68 ? B ASP 75 86 1 Y 1 B GLU 69 ? B GLU 76 87 1 Y 1 B ILE 70 ? B ILE 77 88 1 Y 1 B THR 71 ? B THR 78 89 1 Y 1 B THR 72 ? B THR 79 90 1 Y 1 B LYS 73 ? B LYS 80 91 1 Y 1 B TYR 74 ? B TYR 81 92 1 Y 1 B LEU 75 ? B LEU 82 93 1 Y 1 B SER 76 ? B SER 83 94 1 Y 1 B SER 77 ? B SER 84 95 1 Y 1 B LEU 78 ? B LEU 85 96 1 Y 1 B HIS 79 ? B HIS 86 97 1 Y 1 B ASP 80 ? B ASP 87 98 1 Y 1 B LYS 81 ? B LYS 88 99 1 Y 1 B TYR 82 ? B TYR 89 100 1 Y 1 B GLY 83 ? B GLY 90 101 1 Y 1 B SER 84 ? B SER 91 102 1 Y 1 B GLY 85 ? B GLY 92 103 1 Y 1 B ALA 86 ? B ALA 93 104 1 Y 1 B ALA 87 ? B ALA 94 105 1 Y 1 B SER 88 ? B SER 95 106 1 Y 1 B ASN 89 ? B ASN 96 107 1 Y 1 B PRO 90 ? B PRO 97 108 1 Y 1 B ASN 91 ? B ASN 98 109 1 Y 1 B ILE 92 ? B ILE 99 110 1 Y 1 B GLY 93 ? B GLY 100 111 1 Y 1 B LYS 94 ? B LYS 101 112 1 Y 1 B ASP 95 ? B ASP 102 113 1 Y 1 B LEU 96 ? B LEU 103 114 1 Y 1 B THR 97 ? B THR 104 115 1 Y 1 B ASP 98 ? B ASP 105 116 1 Y 1 B ALA 99 ? B ALA 106 117 1 Y 1 B GLU 100 ? B GLU 107 118 1 Y 1 B LYS 101 ? B LYS 108 119 1 Y 1 B VAL 102 ? B VAL 109 120 1 Y 1 B GLU 103 ? B GLU 110 121 1 Y 1 B LEU 104 ? B LEU 111 122 1 Y 1 B GLY 105 ? B GLY 112 123 1 Y 1 B GLY 106 ? B GLY 113 124 1 Y 1 B SER 107 ? B SER 114 125 1 Y 1 B GLY 108 ? B GLY 115 126 1 Y 1 B SER 109 ? B SER 116 127 1 Y 1 B GLY 110 ? B GLY 117 128 1 Y 1 B THR 111 ? B THR 118 129 1 Y 1 B GLY 112 ? B GLY 119 130 1 Y 1 B THR 113 ? B THR 120 131 1 Y 1 B PRO 114 ? B PRO 121 132 1 Y 1 B PRO 115 ? B PRO 122 133 1 Y 1 B PRO 116 ? B PRO 123 134 1 Y 1 B SER 117 ? B SER 124 135 1 Y 1 B GLU 118 ? B GLU 125 136 1 Y 1 B ASN 119 ? B ASN 126 137 1 Y 1 B ASP 120 ? B ASP 127 138 1 Y 1 B PRO 121 ? B PRO 128 139 1 Y 1 B LYS 122 ? B LYS 129 140 1 Y 1 B GLN 123 ? B GLN 130 141 1 Y 1 B GLN 124 ? B GLN 131 142 1 Y 1 B ASN 125 ? B ASN 132 143 1 Y 1 B GLU 126 ? B GLU 133 144 1 Y 1 C A 73 ? C A 74 145 1 Y 1 C C 74 ? C C 75 146 1 Y 1 C C 75 ? C C 76 147 1 Y 1 C A 76 ? C A 77 148 1 Y 1 E MET 1 ? D MET 1 149 1 Y 1 E PHE 316 ? D PHE 316 150 1 Y 1 E THR 317 ? D THR 317 151 1 Y 1 E GLU 318 ? D GLU 318 152 1 Y 1 E LYS 319 ? D LYS 319 153 1 Y 1 E GLU 320 ? D GLU 320 154 1 Y 1 E LEU 321 ? D LEU 321 155 1 Y 1 E GLN 322 ? D GLN 322 156 1 Y 1 E GLN 323 ? D GLN 323 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LLP N1 N Y N 312 LLP C2 C Y N 313 LLP "C2'" C N N 314 LLP C3 C Y N 315 LLP O3 O N N 316 LLP C4 C Y N 317 LLP "C4'" C N N 318 LLP C5 C Y N 319 LLP C6 C Y N 320 LLP "C5'" C N N 321 LLP OP4 O N N 322 LLP P P N N 323 LLP OP1 O N N 324 LLP OP2 O N N 325 LLP OP3 O N N 326 LLP N N N N 327 LLP CA C N S 328 LLP CB C N N 329 LLP CG C N N 330 LLP CD C N N 331 LLP CE C N N 332 LLP NZ N N N 333 LLP C C N N 334 LLP O O N N 335 LLP OXT O N N 336 LLP "H2'1" H N N 337 LLP "H2'2" H N N 338 LLP "H2'3" H N N 339 LLP HO3 H N N 340 LLP "H4'1" H N N 341 LLP H6 H N N 342 LLP "H5'1" H N N 343 LLP "H5'2" H N N 344 LLP HOP2 H N N 345 LLP HOP3 H N N 346 LLP H H N N 347 LLP H2 H N N 348 LLP HA H N N 349 LLP HB2 H N N 350 LLP HB3 H N N 351 LLP HG2 H N N 352 LLP HG3 H N N 353 LLP HD2 H N N 354 LLP HD3 H N N 355 LLP HE2 H N N 356 LLP HE3 H N N 357 LLP HXT H N N 358 LYS N N N N 359 LYS CA C N S 360 LYS C C N N 361 LYS O O N N 362 LYS CB C N N 363 LYS CG C N N 364 LYS CD C N N 365 LYS CE C N N 366 LYS NZ N N N 367 LYS OXT O N N 368 LYS H H N N 369 LYS H2 H N N 370 LYS HA H N N 371 LYS HB2 H N N 372 LYS HB3 H N N 373 LYS HG2 H N N 374 LYS HG3 H N N 375 LYS HD2 H N N 376 LYS HD3 H N N 377 LYS HE2 H N N 378 LYS HE3 H N N 379 LYS HZ1 H N N 380 LYS HZ2 H N N 381 LYS HZ3 H N N 382 LYS HXT H N N 383 MET N N N N 384 MET CA C N S 385 MET C C N N 386 MET O O N N 387 MET CB C N N 388 MET CG C N N 389 MET SD S N N 390 MET CE C N N 391 MET OXT O N N 392 MET H H N N 393 MET H2 H N N 394 MET HA H N N 395 MET HB2 H N N 396 MET HB3 H N N 397 MET HG2 H N N 398 MET HG3 H N N 399 MET HE1 H N N 400 MET HE2 H N N 401 MET HE3 H N N 402 MET HXT H N N 403 MG MG MG N N 404 PHE N N N N 405 PHE CA C N S 406 PHE C C N N 407 PHE O O N N 408 PHE CB C N N 409 PHE CG C Y N 410 PHE CD1 C Y N 411 PHE CD2 C Y N 412 PHE CE1 C Y N 413 PHE CE2 C Y N 414 PHE CZ C Y N 415 PHE OXT O N N 416 PHE H H N N 417 PHE H2 H N N 418 PHE HA H N N 419 PHE HB2 H N N 420 PHE HB3 H N N 421 PHE HD1 H N N 422 PHE HD2 H N N 423 PHE HE1 H N N 424 PHE HE2 H N N 425 PHE HZ H N N 426 PHE HXT H N N 427 PRO N N N N 428 PRO CA C N S 429 PRO C C N N 430 PRO O O N N 431 PRO CB C N N 432 PRO CG C N N 433 PRO CD C N N 434 PRO OXT O N N 435 PRO H H N N 436 PRO HA H N N 437 PRO HB2 H N N 438 PRO HB3 H N N 439 PRO HG2 H N N 440 PRO HG3 H N N 441 PRO HD2 H N N 442 PRO HD3 H N N 443 PRO HXT H N N 444 SER N N N N 445 SER CA C N S 446 SER C C N N 447 SER O O N N 448 SER CB C N N 449 SER OG O N N 450 SER OXT O N N 451 SER H H N N 452 SER H2 H N N 453 SER HA H N N 454 SER HB2 H N N 455 SER HB3 H N N 456 SER HG H N N 457 SER HXT H N N 458 T6A P P N N 459 T6A OP1 O N N 460 T6A OP2 O N N 461 T6A OP3 O N N 462 T6A "O5'" O N N 463 T6A "C5'" C N N 464 T6A "C4'" C N R 465 T6A "O4'" O N N 466 T6A "C3'" C N S 467 T6A "O3'" O N N 468 T6A "C2'" C N R 469 T6A "O2'" O N N 470 T6A "C1'" C N R 471 T6A N9 N Y N 472 T6A C8 C Y N 473 T6A N7 N Y N 474 T6A C5 C Y N 475 T6A C6 C Y N 476 T6A N6 N N N 477 T6A N1 N Y N 478 T6A C2 C Y N 479 T6A N3 N Y N 480 T6A C4 C Y N 481 T6A C10 C N N 482 T6A O10 O N N 483 T6A N11 N N N 484 T6A C12 C N S 485 T6A C13 C N N 486 T6A ODA O N N 487 T6A ODB O N N 488 T6A C14 C N R 489 T6A O14 O N N 490 T6A C15 C N N 491 T6A HOP2 H N N 492 T6A HOP3 H N N 493 T6A "H5'" H N N 494 T6A "H5''" H N N 495 T6A "H4'" H N N 496 T6A "H3'" H N N 497 T6A "HO3'" H N N 498 T6A "H2'" H N N 499 T6A "HO2'" H N N 500 T6A "H1'" H N N 501 T6A H8 H N N 502 T6A HN6 H N N 503 T6A H2 H N N 504 T6A HN1 H N N 505 T6A H12 H N N 506 T6A H13 H N N 507 T6A H14 H N N 508 T6A HO4 H N N 509 T6A H151 H N N 510 T6A H152 H N N 511 T6A H153 H N N 512 THR N N N N 513 THR CA C N S 514 THR C C N N 515 THR O O N N 516 THR CB C N R 517 THR OG1 O N N 518 THR CG2 C N N 519 THR OXT O N N 520 THR H H N N 521 THR H2 H N N 522 THR HA H N N 523 THR HB H N N 524 THR HG1 H N N 525 THR HG21 H N N 526 THR HG22 H N N 527 THR HG23 H N N 528 THR HXT H N N 529 TRP N N N N 530 TRP CA C N S 531 TRP C C N N 532 TRP O O N N 533 TRP CB C N N 534 TRP CG C Y N 535 TRP CD1 C Y N 536 TRP CD2 C Y N 537 TRP NE1 N Y N 538 TRP CE2 C Y N 539 TRP CE3 C Y N 540 TRP CZ2 C Y N 541 TRP CZ3 C Y N 542 TRP CH2 C Y N 543 TRP OXT O N N 544 TRP H H N N 545 TRP H2 H N N 546 TRP HA H N N 547 TRP HB2 H N N 548 TRP HB3 H N N 549 TRP HD1 H N N 550 TRP HE1 H N N 551 TRP HE3 H N N 552 TRP HZ2 H N N 553 TRP HZ3 H N N 554 TRP HH2 H N N 555 TRP HXT H N N 556 TYR N N N N 557 TYR CA C N S 558 TYR C C N N 559 TYR O O N N 560 TYR CB C N N 561 TYR CG C Y N 562 TYR CD1 C Y N 563 TYR CD2 C Y N 564 TYR CE1 C Y N 565 TYR CE2 C Y N 566 TYR CZ C Y N 567 TYR OH O N N 568 TYR OXT O N N 569 TYR H H N N 570 TYR H2 H N N 571 TYR HA H N N 572 TYR HB2 H N N 573 TYR HB3 H N N 574 TYR HD1 H N N 575 TYR HD2 H N N 576 TYR HE1 H N N 577 TYR HE2 H N N 578 TYR HH H N N 579 TYR HXT H N N 580 U OP3 O N N 581 U P P N N 582 U OP1 O N N 583 U OP2 O N N 584 U "O5'" O N N 585 U "C5'" C N N 586 U "C4'" C N R 587 U "O4'" O N N 588 U "C3'" C N S 589 U "O3'" O N N 590 U "C2'" C N R 591 U "O2'" O N N 592 U "C1'" C N R 593 U N1 N N N 594 U C2 C N N 595 U O2 O N N 596 U N3 N N N 597 U C4 C N N 598 U O4 O N N 599 U C5 C N N 600 U C6 C N N 601 U HOP3 H N N 602 U HOP2 H N N 603 U "H5'" H N N 604 U "H5''" H N N 605 U "H4'" H N N 606 U "H3'" H N N 607 U "HO3'" H N N 608 U "H2'" H N N 609 U "HO2'" H N N 610 U "H1'" H N N 611 U H3 H N N 612 U H5 H N N 613 U H6 H N N 614 VAL N N N N 615 VAL CA C N S 616 VAL C C N N 617 VAL O O N N 618 VAL CB C N N 619 VAL CG1 C N N 620 VAL CG2 C N N 621 VAL OXT O N N 622 VAL H H N N 623 VAL H2 H N N 624 VAL HA H N N 625 VAL HB H N N 626 VAL HG11 H N N 627 VAL HG12 H N N 628 VAL HG13 H N N 629 VAL HG21 H N N 630 VAL HG22 H N N 631 VAL HG23 H N N 632 VAL HXT H N N 633 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LLP N1 C2 doub Y N 307 LLP N1 C6 sing Y N 308 LLP C2 "C2'" sing N N 309 LLP C2 C3 sing Y N 310 LLP C3 O3 sing N N 311 LLP C3 C4 doub Y N 312 LLP C4 "C4'" sing N N 313 LLP C4 C5 sing Y N 314 LLP "C4'" NZ doub N N 315 LLP C5 C6 doub Y N 316 LLP C5 "C5'" sing N N 317 LLP "C5'" OP4 sing N N 318 LLP OP4 P sing N N 319 LLP P OP1 doub N N 320 LLP P OP2 sing N N 321 LLP P OP3 sing N N 322 LLP N CA sing N N 323 LLP CA CB sing N N 324 LLP CA C sing N N 325 LLP CB CG sing N N 326 LLP CG CD sing N N 327 LLP CD CE sing N N 328 LLP CE NZ sing N N 329 LLP C O doub N N 330 LLP C OXT sing N N 331 LLP "C2'" "H2'1" sing N N 332 LLP "C2'" "H2'2" sing N N 333 LLP "C2'" "H2'3" sing N N 334 LLP O3 HO3 sing N N 335 LLP "C4'" "H4'1" sing N N 336 LLP C6 H6 sing N N 337 LLP "C5'" "H5'1" sing N N 338 LLP "C5'" "H5'2" sing N N 339 LLP OP2 HOP2 sing N N 340 LLP OP3 HOP3 sing N N 341 LLP N H sing N N 342 LLP N H2 sing N N 343 LLP CA HA sing N N 344 LLP CB HB2 sing N N 345 LLP CB HB3 sing N N 346 LLP CG HG2 sing N N 347 LLP CG HG3 sing N N 348 LLP CD HD2 sing N N 349 LLP CD HD3 sing N N 350 LLP CE HE2 sing N N 351 LLP CE HE3 sing N N 352 LLP OXT HXT sing N N 353 LYS N CA sing N N 354 LYS N H sing N N 355 LYS N H2 sing N N 356 LYS CA C sing N N 357 LYS CA CB sing N N 358 LYS CA HA sing N N 359 LYS C O doub N N 360 LYS C OXT sing N N 361 LYS CB CG sing N N 362 LYS CB HB2 sing N N 363 LYS CB HB3 sing N N 364 LYS CG CD sing N N 365 LYS CG HG2 sing N N 366 LYS CG HG3 sing N N 367 LYS CD CE sing N N 368 LYS CD HD2 sing N N 369 LYS CD HD3 sing N N 370 LYS CE NZ sing N N 371 LYS CE HE2 sing N N 372 LYS CE HE3 sing N N 373 LYS NZ HZ1 sing N N 374 LYS NZ HZ2 sing N N 375 LYS NZ HZ3 sing N N 376 LYS OXT HXT sing N N 377 MET N CA sing N N 378 MET N H sing N N 379 MET N H2 sing N N 380 MET CA C sing N N 381 MET CA CB sing N N 382 MET CA HA sing N N 383 MET C O doub N N 384 MET C OXT sing N N 385 MET CB CG sing N N 386 MET CB HB2 sing N N 387 MET CB HB3 sing N N 388 MET CG SD sing N N 389 MET CG HG2 sing N N 390 MET CG HG3 sing N N 391 MET SD CE sing N N 392 MET CE HE1 sing N N 393 MET CE HE2 sing N N 394 MET CE HE3 sing N N 395 MET OXT HXT sing N N 396 PHE N CA sing N N 397 PHE N H sing N N 398 PHE N H2 sing N N 399 PHE CA C sing N N 400 PHE CA CB sing N N 401 PHE CA HA sing N N 402 PHE C O doub N N 403 PHE C OXT sing N N 404 PHE CB CG sing N N 405 PHE CB HB2 sing N N 406 PHE CB HB3 sing N N 407 PHE CG CD1 doub Y N 408 PHE CG CD2 sing Y N 409 PHE CD1 CE1 sing Y N 410 PHE CD1 HD1 sing N N 411 PHE CD2 CE2 doub Y N 412 PHE CD2 HD2 sing N N 413 PHE CE1 CZ doub Y N 414 PHE CE1 HE1 sing N N 415 PHE CE2 CZ sing Y N 416 PHE CE2 HE2 sing N N 417 PHE CZ HZ sing N N 418 PHE OXT HXT sing N N 419 PRO N CA sing N N 420 PRO N CD sing N N 421 PRO N H sing N N 422 PRO CA C sing N N 423 PRO CA CB sing N N 424 PRO CA HA sing N N 425 PRO C O doub N N 426 PRO C OXT sing N N 427 PRO CB CG sing N N 428 PRO CB HB2 sing N N 429 PRO CB HB3 sing N N 430 PRO CG CD sing N N 431 PRO CG HG2 sing N N 432 PRO CG HG3 sing N N 433 PRO CD HD2 sing N N 434 PRO CD HD3 sing N N 435 PRO OXT HXT sing N N 436 SER N CA sing N N 437 SER N H sing N N 438 SER N H2 sing N N 439 SER CA C sing N N 440 SER CA CB sing N N 441 SER CA HA sing N N 442 SER C O doub N N 443 SER C OXT sing N N 444 SER CB OG sing N N 445 SER CB HB2 sing N N 446 SER CB HB3 sing N N 447 SER OG HG sing N N 448 SER OXT HXT sing N N 449 T6A P OP1 doub N N 450 T6A P OP2 sing N N 451 T6A P OP3 sing N N 452 T6A P "O5'" sing N N 453 T6A OP2 HOP2 sing N N 454 T6A OP3 HOP3 sing N N 455 T6A "O5'" "C5'" sing N N 456 T6A "C5'" "C4'" sing N N 457 T6A "C5'" "H5'" sing N N 458 T6A "C5'" "H5''" sing N N 459 T6A "C4'" "O4'" sing N N 460 T6A "C4'" "C3'" sing N N 461 T6A "C4'" "H4'" sing N N 462 T6A "O4'" "C1'" sing N N 463 T6A "C3'" "O3'" sing N N 464 T6A "C3'" "C2'" sing N N 465 T6A "C3'" "H3'" sing N N 466 T6A "O3'" "HO3'" sing N N 467 T6A "C2'" "O2'" sing N N 468 T6A "C2'" "C1'" sing N N 469 T6A "C2'" "H2'" sing N N 470 T6A "O2'" "HO2'" sing N N 471 T6A "C1'" N9 sing N N 472 T6A "C1'" "H1'" sing N N 473 T6A N9 C8 sing Y N 474 T6A N9 C4 sing Y N 475 T6A C8 N7 doub Y N 476 T6A C8 H8 sing N N 477 T6A N7 C5 sing Y N 478 T6A C5 C6 sing Y N 479 T6A C5 C4 doub Y N 480 T6A C6 N6 sing N N 481 T6A C6 N1 doub Y N 482 T6A N6 C10 sing N N 483 T6A N6 HN6 sing N N 484 T6A N1 C2 sing Y N 485 T6A C2 N3 doub Y N 486 T6A C2 H2 sing N N 487 T6A N3 C4 sing Y N 488 T6A C10 O10 doub N N 489 T6A C10 N11 sing N N 490 T6A N11 C12 sing N N 491 T6A N11 HN1 sing N N 492 T6A C12 C13 sing N N 493 T6A C12 C14 sing N N 494 T6A C12 H12 sing N N 495 T6A C13 ODA doub N N 496 T6A C13 ODB sing N N 497 T6A ODB H13 sing N N 498 T6A C14 O14 sing N N 499 T6A C14 C15 sing N N 500 T6A C14 H14 sing N N 501 T6A O14 HO4 sing N N 502 T6A C15 H151 sing N N 503 T6A C15 H152 sing N N 504 T6A C15 H153 sing N N 505 THR N CA sing N N 506 THR N H sing N N 507 THR N H2 sing N N 508 THR CA C sing N N 509 THR CA CB sing N N 510 THR CA HA sing N N 511 THR C O doub N N 512 THR C OXT sing N N 513 THR CB OG1 sing N N 514 THR CB CG2 sing N N 515 THR CB HB sing N N 516 THR OG1 HG1 sing N N 517 THR CG2 HG21 sing N N 518 THR CG2 HG22 sing N N 519 THR CG2 HG23 sing N N 520 THR OXT HXT sing N N 521 TRP N CA sing N N 522 TRP N H sing N N 523 TRP N H2 sing N N 524 TRP CA C sing N N 525 TRP CA CB sing N N 526 TRP CA HA sing N N 527 TRP C O doub N N 528 TRP C OXT sing N N 529 TRP CB CG sing N N 530 TRP CB HB2 sing N N 531 TRP CB HB3 sing N N 532 TRP CG CD1 doub Y N 533 TRP CG CD2 sing Y N 534 TRP CD1 NE1 sing Y N 535 TRP CD1 HD1 sing N N 536 TRP CD2 CE2 doub Y N 537 TRP CD2 CE3 sing Y N 538 TRP NE1 CE2 sing Y N 539 TRP NE1 HE1 sing N N 540 TRP CE2 CZ2 sing Y N 541 TRP CE3 CZ3 doub Y N 542 TRP CE3 HE3 sing N N 543 TRP CZ2 CH2 doub Y N 544 TRP CZ2 HZ2 sing N N 545 TRP CZ3 CH2 sing Y N 546 TRP CZ3 HZ3 sing N N 547 TRP CH2 HH2 sing N N 548 TRP OXT HXT sing N N 549 TYR N CA sing N N 550 TYR N H sing N N 551 TYR N H2 sing N N 552 TYR CA C sing N N 553 TYR CA CB sing N N 554 TYR CA HA sing N N 555 TYR C O doub N N 556 TYR C OXT sing N N 557 TYR CB CG sing N N 558 TYR CB HB2 sing N N 559 TYR CB HB3 sing N N 560 TYR CG CD1 doub Y N 561 TYR CG CD2 sing Y N 562 TYR CD1 CE1 sing Y N 563 TYR CD1 HD1 sing N N 564 TYR CD2 CE2 doub Y N 565 TYR CD2 HD2 sing N N 566 TYR CE1 CZ doub Y N 567 TYR CE1 HE1 sing N N 568 TYR CE2 CZ sing Y N 569 TYR CE2 HE2 sing N N 570 TYR CZ OH sing N N 571 TYR OH HH sing N N 572 TYR OXT HXT sing N N 573 U OP3 P sing N N 574 U OP3 HOP3 sing N N 575 U P OP1 doub N N 576 U P OP2 sing N N 577 U P "O5'" sing N N 578 U OP2 HOP2 sing N N 579 U "O5'" "C5'" sing N N 580 U "C5'" "C4'" sing N N 581 U "C5'" "H5'" sing N N 582 U "C5'" "H5''" sing N N 583 U "C4'" "O4'" sing N N 584 U "C4'" "C3'" sing N N 585 U "C4'" "H4'" sing N N 586 U "O4'" "C1'" sing N N 587 U "C3'" "O3'" sing N N 588 U "C3'" "C2'" sing N N 589 U "C3'" "H3'" sing N N 590 U "O3'" "HO3'" sing N N 591 U "C2'" "O2'" sing N N 592 U "C2'" "C1'" sing N N 593 U "C2'" "H2'" sing N N 594 U "O2'" "HO2'" sing N N 595 U "C1'" N1 sing N N 596 U "C1'" "H1'" sing N N 597 U N1 C2 sing N N 598 U N1 C6 sing N N 599 U C2 O2 doub N N 600 U C2 N3 sing N N 601 U N3 C4 sing N N 602 U N3 H3 sing N N 603 U C4 O4 doub N N 604 U C4 C5 sing N N 605 U C5 C6 doub N N 606 U C5 H5 sing N N 607 U C6 H6 sing N N 608 VAL N CA sing N N 609 VAL N H sing N N 610 VAL N H2 sing N N 611 VAL CA C sing N N 612 VAL CA CB sing N N 613 VAL CA HA sing N N 614 VAL C O doub N N 615 VAL C OXT sing N N 616 VAL CB CG1 sing N N 617 VAL CB CG2 sing N N 618 VAL CB HB sing N N 619 VAL CG1 HG11 sing N N 620 VAL CG1 HG12 sing N N 621 VAL CG1 HG13 sing N N 622 VAL CG2 HG21 sing N N 623 VAL CG2 HG22 sing N N 624 VAL CG2 HG23 sing N N 625 VAL OXT HXT sing N N 626 # _em_admin.current_status REL _em_admin.deposition_date 2024-06-17 _em_admin.deposition_site PDBJ _em_admin.entry_id 8ZYD _em_admin.last_update 2024-08-21 _em_admin.map_release_date 2024-08-21 _em_admin.title 'Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex B' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 25 mM Tris-HCl 1 Tris-HCl 1 50 mM NaCl 2 'Sodium chloride' 1 2 mM MgCl2 3 'Magnesium chloride' 1 10 mM 2-mercaptoethanol 4 2-mercaptoethanol # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.11 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 362663 _em_entity_assembly_naturalsource.organism 'Escherichia coli 536' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 7044 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 4707496 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'MODEL REFINEMENT' ? 1 ? ? ? PHENIX 1.18.2_3874: 'IMAGE ACQUISITION' ? 2 1 1 1 ? ? 'PARTICLE SELECTION' ? 3 1 1 1 ? ? 'VOLUME SELECTION' ? 4 1 1 1 ? ? CLASSIFICATION ? 5 1 1 1 ? ? MASKING ? 6 1 1 1 ? ? RECONSTRUCTION ? 7 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 8 1 1 1 ? ? 'FINAL EULER ASSIGNMENT' ? 9 1 1 1 ? ? 'CTF CORRECTION' ? 10 1 1 1 ? ? 'LAYERLINE INDEXING' ? 11 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 12 1 1 1 ? ? 'MODEL FITTING' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? OTHER ? 19 1 1 1 ? ? # _em_specimen.concentration 1.6 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8ZYD 'double helix' 8ZYD 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 2 1_555 C C 72 1_555 0.132 -0.245 -0.930 -16.099 23.743 -7.837 1 C_G2:C71_C C 2 ? C 71 ? 19 1 1 C G 3 1_555 C C 71 1_555 -0.112 -0.192 -0.955 -12.423 2.698 -3.489 2 C_G3:C70_C C 3 ? C 70 ? 19 1 1 C C 4 1_555 C G 70 1_555 0.090 -0.246 -0.432 -0.107 9.070 -2.975 3 C_C4:G69_C C 4 ? C 69 ? 19 1 1 C U 5 1_555 C G 69 1_555 1.291 -0.443 0.040 4.016 0.488 3.206 4 C_U5:G68_C C 5 ? C 68 ? 28 1 1 C U 6 1_555 C A 68 1_555 -0.066 -0.192 0.557 0.948 -4.120 7.246 5 C_U6:A67_C C 6 ? C 67 ? 20 1 1 C G 7 1_555 C C 67 1_555 -0.158 -0.147 -0.229 -4.138 3.720 -0.563 6 C_G7:C66_C C 7 ? C 66 ? 19 1 1 C G 50 1_555 C U 66 1_555 -0.484 -0.757 -0.833 -13.832 -2.223 -8.992 7 C_G49:U65_C C 49 ? C 65 ? 27 1 1 C G 51 1_555 C C 65 1_555 -0.121 -0.239 -0.595 -9.934 4.419 -0.866 8 C_G50:C64_C C 50 ? C 64 ? 19 1 1 C U 52 1_555 C A 64 1_555 0.026 -0.132 0.122 1.830 2.248 3.490 9 C_U51:A63_C C 51 ? C 63 ? 20 1 1 C G 53 1_555 C C 63 1_555 -0.102 -0.209 -0.862 -13.167 -3.796 -1.218 10 C_G52:C62_C C 52 ? C 62 ? 19 1 1 C G 54 1_555 C C 62 1_555 -0.148 -0.166 -0.778 -10.795 2.544 0.512 11 C_G53:C61_C C 53 ? C 61 ? 19 1 1 C U 55 1_555 C A 59 1_555 4.467 -2.590 0.437 6.148 10.594 -98.169 12 C_U54:A58_C C 54 ? C 58 ? 24 4 1 C U 56 1_555 C G 18 1_555 0.738 -4.666 0.110 30.210 7.993 -94.964 13 C_U55:G18_C C 55 ? C 18 ? ? 2 1 C A 39 1_555 C C 33 1_555 -5.754 -0.455 -0.238 5.216 22.579 10.096 14 C_A38:C32_C C 38 ? C 32 ? ? ? 1 C G 40 1_555 C C 32 1_555 1.239 0.703 0.042 8.804 21.373 15.936 15 C_G39:C31_C C 39 ? C 31 ? ? 1 1 C G 41 1_555 C C 31 1_555 -0.117 -0.137 0.050 -0.351 8.129 3.116 16 C_G40:C30_C C 40 ? C 30 ? 19 1 1 C G 42 1_555 C C 30 1_555 -0.136 -0.141 -0.315 -0.677 1.412 -0.656 17 C_G41:C29_C C 41 ? C 29 ? 19 1 1 C U 43 1_555 C A 29 1_555 -0.011 -0.066 0.051 -0.145 1.841 -1.123 18 C_U42:A28_C C 42 ? C 28 ? 20 1 1 C G 44 1_555 C C 28 1_555 -0.103 -0.167 0.131 -6.198 -9.815 -1.578 19 C_G43:C27_C C 43 ? C 27 ? 19 1 1 C A 45 1_555 C G 27 1_555 -0.292 1.697 0.771 -24.805 -8.255 -9.646 20 C_A44:G26_C C 44 ? C 26 ? 8 1 1 C G 10 1_555 C C 26 1_555 -0.166 -0.152 0.363 -1.658 4.998 1.284 21 C_G10:C25_C C 10 ? C 25 ? 19 1 1 C C 11 1_555 C G 25 1_555 0.142 -0.196 0.345 -0.352 4.698 -0.637 22 C_C11:G24_C C 11 ? C 24 ? 19 1 1 C U 12 1_555 C A 24 1_555 -0.092 0.001 -0.010 2.548 3.498 -8.573 23 C_U12:A23_C C 12 ? C 23 ? 20 1 1 C C 13 1_555 C G 23 1_555 -0.477 -0.300 -0.226 1.463 -2.882 -5.589 24 C_C13:G22_C C 13 ? C 22 ? 19 1 1 C A 14 1_555 C U 8 1_555 -4.100 -1.701 -0.208 6.711 4.634 -99.250 25 C_A14:U8_C C 14 ? C 8 ? 24 4 1 C G 15 1_555 C C 49 1_555 -0.092 5.281 -0.014 7.758 13.147 155.010 26 C_G15:C48_C C 15 ? C 48 ? 22 2 1 C G 19 1_555 C C 57 1_555 -2.643 -0.328 0.075 -8.274 -26.864 -15.575 27 C_G19:C56_C C 19 ? C 56 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 2 1_555 C C 72 1_555 C G 3 1_555 C C 71 1_555 1.269 -0.936 3.582 -0.140 35.932 33.710 -3.879 -1.544 1.839 48.198 0.187 48.886 1 CC_G2G3:C70C71_CC C 2 ? C 71 ? C 3 ? C 70 ? 1 C G 3 1_555 C C 71 1_555 C C 4 1_555 C G 70 1_555 1.010 -1.953 3.151 -1.585 4.409 22.442 -6.315 -3.046 2.646 11.171 4.015 22.920 2 CC_G3C4:G69C70_CC C 3 ? C 70 ? C 4 ? C 69 ? 1 C C 4 1_555 C G 70 1_555 C U 5 1_555 C G 69 1_555 0.953 -1.522 3.161 -1.418 8.889 37.384 -3.321 -1.609 2.705 13.626 2.173 38.415 3 CC_C4U5:G68G69_CC C 4 ? C 69 ? C 5 ? C 68 ? 1 C U 5 1_555 C G 69 1_555 C U 6 1_555 C A 68 1_555 0.318 -1.989 3.568 1.707 1.691 29.059 -4.349 -0.231 3.461 3.362 -3.394 29.156 4 CC_U5U6:A67G68_CC C 5 ? C 68 ? C 6 ? C 67 ? 1 C U 6 1_555 C A 68 1_555 C G 7 1_555 C C 67 1_555 0.214 -1.517 3.313 8.828 31.468 29.982 -4.542 0.422 1.268 46.775 -13.123 44.073 5 CC_U6G7:C66A67_CC C 6 ? C 67 ? C 7 ? C 66 ? 1 C G 7 1_555 C C 67 1_555 C G 50 1_555 C U 66 1_555 0.175 -2.402 3.619 4.942 10.317 32.469 -5.680 0.477 2.747 17.777 -8.515 34.374 6 CC_G7G49:U65C66_CC C 7 ? C 66 ? C 49 ? C 65 ? 1 C G 50 1_555 C U 66 1_555 C G 51 1_555 C C 65 1_555 -0.044 -1.381 3.261 -2.716 4.129 35.046 -2.865 -0.317 3.078 6.815 4.483 35.382 7 CC_G49G50:C64U65_CC C 49 ? C 65 ? C 50 ? C 64 ? 1 C G 51 1_555 C C 65 1_555 C U 52 1_555 C A 64 1_555 0.411 -1.244 3.340 -2.589 4.150 28.472 -3.406 -1.393 3.083 8.359 5.216 28.880 8 CC_G50U51:A63C64_CC C 50 ? C 64 ? C 51 ? C 63 ? 1 C U 52 1_555 C A 64 1_555 C G 53 1_555 C C 63 1_555 0.547 -1.622 3.520 8.279 21.324 34.627 -4.525 0.089 2.264 31.890 -12.382 41.306 9 CC_U51G52:C62A63_CC C 51 ? C 63 ? C 52 ? C 62 ? 1 C G 53 1_555 C C 63 1_555 C G 54 1_555 C C 62 1_555 -0.021 -1.505 3.329 -3.942 4.474 32.256 -3.426 -0.632 3.079 7.968 7.020 32.788 10 CC_G52G53:C61C62_CC C 52 ? C 62 ? C 53 ? C 61 ? 1 C G 54 1_555 C C 62 1_555 C U 55 1_555 C A 59 1_555 -2.373 -1.965 3.144 -1.912 4.367 86.265 -1.528 1.693 3.104 3.192 1.397 86.371 11 CC_G53U54:A58C61_CC C 53 ? C 61 ? C 54 ? C 58 ? 1 C U 55 1_555 C A 59 1_555 C U 56 1_555 C G 18 1_555 1.417 -1.768 3.687 -0.145 1.936 37.559 -3.023 -2.219 3.589 3.005 0.225 37.607 12 CC_U54U55:G18A58_CC C 54 ? C 58 ? C 55 ? C 18 ? 1 C A 39 1_555 C C 33 1_555 C G 40 1_555 C C 32 1_555 0.104 -1.109 3.148 -7.104 9.336 53.396 -1.737 -0.515 2.897 10.250 7.800 54.577 13 CC_A38G39:C31C32_CC C 38 ? C 32 ? C 39 ? C 31 ? 1 C G 40 1_555 C C 32 1_555 C G 41 1_555 C C 31 1_555 -0.216 -2.772 3.483 1.574 7.418 22.778 -8.900 0.993 2.449 18.148 -3.850 23.992 14 CC_G39G40:C30C31_CC C 39 ? C 31 ? C 40 ? C 30 ? 1 C G 41 1_555 C C 31 1_555 C G 42 1_555 C C 30 1_555 -0.069 -1.946 3.284 3.694 4.537 31.788 -4.271 0.755 2.959 8.197 -6.673 32.308 15 CC_G40G41:C29C30_CC C 40 ? C 30 ? C 41 ? C 29 ? 1 C G 42 1_555 C C 30 1_555 C U 43 1_555 C A 29 1_555 -0.116 -1.806 3.422 -0.554 4.769 32.555 -4.009 0.109 3.134 8.449 0.982 32.898 16 CC_G41U42:A28C29_CC C 41 ? C 29 ? C 42 ? C 28 ? 1 C U 43 1_555 C A 29 1_555 C G 44 1_555 C C 28 1_555 0.610 -1.731 3.132 3.475 10.085 33.373 -4.236 -0.547 2.566 17.029 -5.867 34.990 17 CC_U42G43:C27A28_CC C 42 ? C 28 ? C 43 ? C 27 ? 1 C G 44 1_555 C C 28 1_555 C A 45 1_555 C G 27 1_555 -0.020 -2.093 3.509 1.743 8.063 38.389 -4.089 0.240 3.022 12.092 -2.614 39.232 18 CC_G43A44:G26C27_CC C 43 ? C 27 ? C 44 ? C 26 ? 1 C A 45 1_555 C G 27 1_555 C G 10 1_555 C C 26 1_555 -2.989 -2.773 2.936 15.133 5.804 58.785 -2.953 3.507 1.929 5.794 -15.106 60.786 19 CC_A44G10:C25G26_CC C 44 ? C 26 ? C 10 ? C 25 ? 1 C G 10 1_555 C C 26 1_555 C C 11 1_555 C G 25 1_555 -0.711 -1.946 3.280 0.405 2.279 38.069 -3.261 1.139 3.155 3.490 -0.620 38.137 20 CC_G10C11:G24C25_CC C 10 ? C 25 ? C 11 ? C 24 ? 1 C C 11 1_555 C G 25 1_555 C U 12 1_555 C A 24 1_555 -0.166 -1.590 3.118 5.200 7.929 33.662 -3.724 0.981 2.633 13.366 -8.765 34.935 21 CC_C11U12:A23G24_CC C 11 ? C 24 ? C 12 ? C 23 ? 1 C U 12 1_555 C A 24 1_555 C C 13 1_555 C G 23 1_555 1.928 -2.221 3.316 6.333 3.234 21.629 -6.850 -2.498 3.372 8.332 -16.319 22.754 22 CC_U12C13:G22A23_CC C 12 ? C 23 ? C 13 ? C 22 ? 1 C C 13 1_555 C G 23 1_555 C A 14 1_555 C U 8 1_555 -1.660 -0.158 3.483 0.792 0.862 68.282 -0.175 1.511 3.464 0.768 -0.705 68.291 23 CC_C13A14:U8G22_CC C 13 ? C 22 ? C 14 ? C 8 ? 1 C A 14 1_555 C U 8 1_555 C G 15 1_555 C C 49 1_555 2.350 -3.761 3.091 3.335 -0.575 -60.907 3.731 2.462 2.939 0.567 3.288 -60.992 24 CC_A14G15:C48U8_CC C 14 ? C 8 ? C 15 ? C 48 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 18H03980 1 'Japan Society for the Promotion of Science (JSPS)' Japan 23H00368 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5J43 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8ZYD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_