data_8ZZJ # _entry.id 8ZZJ # _struct.entry_id 8ZZJ _struct.title 'Multiple co-existing states of an RNA four-way junction resolved by FRET, SAXS, and integrative modeling: major state' _struct.pdbx_structure_determination_methodology integrative # loop_ _audit_conform.dict_location _audit_conform.dict_name _audit_conform.dict_version https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_ext.dic mmcif_ihm_ext.dic 1.27 https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ihm_flr_ext.dic mmcif_ihm_flr_ext.dic 0.02 http://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic mmcif_pdbx.dic 5.399 # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB-Dev PDBDEV_00000019 PDBDEV_00000019 ? PDB 8ZZJ pdb_00008zzj 10.2210/pdb8zzj/pdb # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 8ZZJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2018-06-29 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 'Multiple co-existing structures of an RNA four-way junction resolved by FRET, SAXS, and integrative modeling' . . . . . . . # # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal 1 'Hanke, C.A.' 1 1 'Vardanyan, H.' 2 1 'Sindbert, S.' 3 1 'Kalinin, S.' 4 1 'Barth, A.' 5 1 'Dimura, M.' 6 1 'Soltysinski, T.' 7 1 'Lach, G.' 8 1 'Springstubbe, D.' 9 1 'Apel, B.' 10 1 'Snell, E.' 11 1 'Grant, T.D.' 12 1 'Lipfert, J.' 13 1 'Mueller, S.' 14 1 'Bujnicki, J.M.' 15 1 'Gohlke, H.' 16 1 'Seidel, C.A.M.' 17 # # loop_ _software.pdbx_ordinal _software.name _software.classification _software.description _software.version _software.type _software.location _software.citation_id 1 'FPS (FRET Positioning and Screening)' 'model building and validation' 'FPS program' 1.100 Program http://www.mpc.hhu.de/software/fps.html . 2 Paris 'Burst selection' . . Program http://www.mpc.hhu.de/software/software-package.html . 3 Tatiana 'Photon distribution analysis (PDA)' . . Program http://www.mpc.hhu.de/software/software-package.html . 4 Python_clustering_script Clustering 'Python script for clustering' . Other . . 5 'Amber 11' 'model building' 'Amber software package for MD simulations' . Package http://ambermd.org/ . # # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hanke, C.A.' 1 'Vardanyan, H.' 2 'Sindbert, S.' 3 'Kalinin, S.' 4 'Barth, A.' 5 'Dimura, M.' 6 'Soltysinski, T.' 7 'Lach, G.' 8 'Springstubbe, D.' 9 'Apel, B.' 10 'Snell, E.' 11 'Grant, T.D.' 12 'Lipfert, J.' 13 'Mueller, S.' 14 'Bujnicki, J.M.' 15 'Gohlke, H.' 16 'Seidel, C.A.M.' 17 # # loop_ _chem_comp.id _chem_comp.type _chem_comp.name _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' "ADENOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O7 P' 347.224 C 'RNA linking' "CYTIDINE-5'-MONOPHOSPHATE" 'C9 H14 N3 O8 P' 323.198 G 'RNA linking' "GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.223 U 'RNA linking' "URIDINE-5'-MONOPHOSPHATE" 'C9 H13 N2 O9 P' 324.182 # # loop_ _ihm_chemical_component_descriptor.id _ihm_chemical_component_descriptor.auth_name _ihm_chemical_component_descriptor.chemical_name _ihm_chemical_component_descriptor.common_name _ihm_chemical_component_descriptor.smiles _ihm_chemical_component_descriptor.smiles_canonical _ihm_chemical_component_descriptor.inchi _ihm_chemical_component_descriptor.inchi_key 1 'Alexa488-tetrafluor-phenoxy ester triethylammonium' . . C1=CC(=C(C=C1C(=O)OC2=C(C(=CC(=C2F)F)F)F)C(=O)O[H])C4=C3C=CC(C(=C3OC5=C4C=CC(=C5[S](O[H])(=O)=O)N([H])[H])[S](O[H])(=O)=O)=N[H].CCN(CC)CC . . . 2 'Alexa488 - free acid' . . C1=CC(=C(C=C1C(=O)O[H])C(=O)O[H])C3=C2C=CC(=[N+]([H])[H])C(=C2OC4=C3C=CC(=C4[S](=O)(=O)O[H])N([H])[H])[S](=O)(=O)O[H] . . . 3 'Uridine-C6-Amino Linker' . . C1(=CN(C(=O)NC1=O)C2C(C(C(O2)CO[P](=O)(O)O)O)O)C=CC(=O)NCCCCCCN . . . 4 'Sulfo-Cy5-N-hydroxy succinimidylester' . . CCN2C1=C(C=C(C=C1)[S](=O)(=O)[O-])C(C2=CC=CC=CC3=[N+](C4=C(C3(C)C)C=C(C=C4)[S](=O)(=O)O)CCCCCC(=O)ON5C(CCC5=O)=O)(C)C . . . 5 'Cy5 - free acid' . . CCN1C2=C(C=C(C=C2)S(=O)(=O)[O-])C(C1=CC=CC=CC3=[N+](C4=C(C3(C)C)C=C(C=C4)S(=O)(=O)O)CCCCCC(=O)O)(C)C . . . 6 "2'-Deoxyguanosine derivative" . . N(CCCCCCN(C3=NC(C2=C([N](C1OC(C(C1)O[H])CO[P](=O)([O-])[O-])C=N2)N3[H])=O)[H])([H])[H] . . . 7 'Uridine-Alexa488 conjugate' . . C1(=CN(C(=O)NC1=O)C2C(C(C(O2)CO[P](=O)(O)O)O)O)C=CC(=O)NCCCCCCNC(C3=CC(=C(C=C3)C5=C4C=CC(=[N+])C(=C4OC6=C5C=CC(=C6[S](=O)(=O)O)N)[S](=O)(=O)O)C(=O)O)=O . . . 8 'Uridine-Sulfo-Cy5 conjugate' . . C1(=CN(C(=O)NC1=O)C2C(C(C(O2)CO[P](=O)(O)O)O)O)C=CC(=O)NCCCCCCNC(CCCCC[N+]5=C(C=CC=CC=C3C(C4=C(N3CC)C=CC(=C4)[S](=O)(=O)[O-])(C)C)C(C6=C5C=CC(=C6)[S](=O)(=O)O)(C)C)=O . . . 9 "2'-Deoxyguanosine-Sulfo-Cy5 conjugate" . . CCN2C1=C(C=C(C=C1)[S](=O)(=O)[O-])C(C2=CC=CC=CC3=[N+](C4=C(C3(C)C)C=C(C=C4)[S](=O)(=O)O[H])CCCCCC(=O)N(CCCCCCN(C7=NC(C6=C([N](C5OC(C(C5)O[H])CO[P](=O)([O-])[O-])C=N6)N7[H])=O)[H])[H])(C)C . . . # # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.details 1 polymer man 'RNA (37-MER) - strand a' 12571.758 1 . 2 polymer man 'RNA (37-MER) - strand b' 12609.605 1 . 3 polymer man 'RNA (32-MER) - strand c' 10986.727 1 . 4 polymer man 'RNA (32-MER) - strand d' 10804.569 1 . # # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.details 1 1 PDB 8ZZJ 8ZZJ 1 . 'RNA (37-MER) - strand a' 2 2 PDB 8ZZJ 8ZZJ 1 . 'RNA (37-MER) - strand a' 3 3 PDB 8ZZJ 8ZZJ 1 . 'RNA (32-MER) - strand a' 4 4 PDB 8ZZJ 8ZZJ 1 . 'RNA (32-MER) - strand a' # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end 1 1 1 37 1 37 2 2 1 37 1 37 3 3 1 32 1 32 4 4 1 32 1 32 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_strand_id _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can 1 polyribonucleotide no no A CCGCACAGGACUGUCAACCAGGUAAUAUAACCACCGG CCGCACAGGACUGUCAACCAGGUAAUAUAACCACCGG 2 polyribonucleotide no no B CCGGUGGUUAUAUUACCUGGUACGCCUUGACGUGGGG CCGGUGGUUAUAUUACCUGGUACGCCUUGACGUGGGG 3 polyribonucleotide no no C CCCCACGUCAAGGCGUGGUGGCCGAAGGUCGG CCCCACGUCAAGGCGUGGUGGCCGAAGGUCGG 4 polyribonucleotide no no D CCGACCUUCGGCCACCUGACAGUCCUGUGCGG CCGACCUUCGGCCACCUGACAGUCCUGUGCGG # # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C . 1 2 C . 1 3 G . 1 4 C . 1 5 A . 1 6 C . 1 7 A . 1 8 G . 1 9 G . 1 10 A . 1 11 C . 1 12 U . 1 13 G . 1 14 U . 1 15 C . 1 16 A . 1 17 A . 1 18 C . 1 19 C . 1 20 A . 1 21 G . 1 22 G . 1 23 U . 1 24 A . 1 25 A . 1 26 U . 1 27 A . 1 28 U . 1 29 A . 1 30 A . 1 31 C . 1 32 C . 1 33 A . 1 34 C . 1 35 C . 1 36 G . 1 37 G . 2 1 C . 2 2 C . 2 3 G . 2 4 G . 2 5 U . 2 6 G . 2 7 G . 2 8 U . 2 9 U . 2 10 A . 2 11 U . 2 12 A . 2 13 U . 2 14 U . 2 15 A . 2 16 C . 2 17 C . 2 18 U . 2 19 G . 2 20 G . 2 21 U . 2 22 A . 2 23 C . 2 24 G . 2 25 C . 2 26 C . 2 27 U . 2 28 U . 2 29 G . 2 30 A . 2 31 C . 2 32 G . 2 33 U . 2 34 G . 2 35 G . 2 36 G . 2 37 G . 3 1 C . 3 2 C . 3 3 C . 3 4 C . 3 5 A . 3 6 C . 3 7 G . 3 8 U . 3 9 C . 3 10 A . 3 11 A . 3 12 G . 3 13 G . 3 14 C . 3 15 G . 3 16 U . 3 17 G . 3 18 G . 3 19 U . 3 20 G . 3 21 G . 3 22 C . 3 23 C . 3 24 G . 3 25 A . 3 26 A . 3 27 G . 3 28 G . 3 29 U . 3 30 C . 3 31 G . 3 32 G . 4 1 C . 4 2 C . 4 3 G . 4 4 A . 4 5 C . 4 6 C . 4 7 U . 4 8 U . 4 9 C . 4 10 G . 4 11 G . 4 12 C . 4 13 C . 4 14 A . 4 15 C . 4 16 C . 4 17 U . 4 18 G . 4 19 A . 4 20 C . 4 21 A . 4 22 G . 4 23 U . 4 24 C . 4 25 C . 4 26 U . 4 27 G . 4 28 U . 4 29 G . 4 30 C . 4 31 G . 4 32 G . # # loop_ _ihm_entity_poly_segment.id _ihm_entity_poly_segment.entity_id _ihm_entity_poly_segment.seq_id_begin _ihm_entity_poly_segment.seq_id_end _ihm_entity_poly_segment.comp_id_begin _ihm_entity_poly_segment.comp_id_end 1 1 1 16 C A 2 1 17 37 A G 3 2 1 21 C U 4 2 22 37 A G 5 3 1 16 C U 6 3 17 32 G G 7 4 1 16 C C 8 4 17 32 U G 9 1 1 37 C G 10 2 1 37 C G 11 3 1 32 C G 12 4 1 32 C G # # loop_ _struct_asym.id _struct_asym.entity_id _struct_asym.details A 1 A B 2 B C 3 C D 4 D # # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code A 1 1 C 1 1 C C A . A 1 2 C 2 2 C C A . A 1 3 G 3 3 G G A . A 1 4 C 4 4 C C A . A 1 5 A 5 5 A A A . A 1 6 C 6 6 C C A . A 1 7 A 7 7 A A A . A 1 8 G 8 8 G G A . A 1 9 G 9 9 G G A . A 1 10 A 10 10 A A A . A 1 11 C 11 11 C C A . A 1 12 U 12 12 U U A . A 1 13 G 13 13 G G A . A 1 14 U 14 14 U U A . A 1 15 C 15 15 C C A . A 1 16 A 16 16 A A A . A 1 17 A 17 17 A A A . A 1 18 C 18 18 C C A . A 1 19 C 19 19 C C A . A 1 20 A 20 20 A A A . A 1 21 G 21 21 G G A . A 1 22 G 22 22 G G A . A 1 23 U 23 23 U U A . A 1 24 A 24 24 A A A . A 1 25 A 25 25 A A A . A 1 26 U 26 26 U U A . A 1 27 A 27 27 A A A . A 1 28 U 28 28 U U A . A 1 29 A 29 29 A A A . A 1 30 A 30 30 A A A . A 1 31 C 31 31 C C A . A 1 32 C 32 32 C C A . A 1 33 A 33 33 A A A . A 1 34 C 34 34 C C A . A 1 35 C 35 35 C C A . A 1 36 G 36 36 G G A . A 1 37 G 37 37 G G A . B 2 1 C 1 1 C C B . B 2 2 C 2 2 C C B . B 2 3 G 3 3 G G B . B 2 4 G 4 4 G G B . B 2 5 U 5 5 U U B . B 2 6 G 6 6 G G B . B 2 7 G 7 7 G G B . B 2 8 U 8 8 U U B . B 2 9 U 9 9 U U B . B 2 10 A 10 10 A A B . B 2 11 U 11 11 U U B . B 2 12 A 12 12 A A B . B 2 13 U 13 13 U U B . B 2 14 U 14 14 U U B . B 2 15 A 15 15 A A B . B 2 16 C 16 16 C C B . B 2 17 C 17 17 C C B . B 2 18 U 18 18 U U B . B 2 19 G 19 19 G G B . B 2 20 G 20 20 G G B . B 2 21 U 21 21 U U B . B 2 22 A 22 22 A A B . B 2 23 C 23 23 C C B . B 2 24 G 24 24 G G B . B 2 25 C 25 25 C C B . B 2 26 C 26 26 C C B . B 2 27 U 27 27 U U B . B 2 28 U 28 28 U U B . B 2 29 G 29 29 G G B . B 2 30 A 30 30 A A B . B 2 31 C 31 31 C C B . B 2 32 G 32 32 G G B . B 2 33 U 33 33 U U B . B 2 34 G 34 34 G G B . B 2 35 G 35 35 G G B . B 2 36 G 36 36 G G B . B 2 37 G 37 37 G G B . C 3 1 C 1 1 C C C . C 3 2 C 2 2 C C C . C 3 3 C 3 3 C C C . C 3 4 C 4 4 C C C . C 3 5 A 5 5 A A C . C 3 6 C 6 6 C C C . C 3 7 G 7 7 G G C . C 3 8 U 8 8 U U C . C 3 9 C 9 9 C C C . C 3 10 A 10 10 A A C . C 3 11 A 11 11 A A C . C 3 12 G 12 12 G G C . C 3 13 G 13 13 G G C . C 3 14 C 14 14 C C C . C 3 15 G 15 15 G G C . C 3 16 U 16 16 U U C . C 3 17 G 17 17 G G C . C 3 18 G 18 18 G G C . C 3 19 U 19 19 U U C . C 3 20 G 20 20 G G C . C 3 21 G 21 21 G G C . C 3 22 C 22 22 C C C . C 3 23 C 23 23 C C C . C 3 24 G 24 24 G G C . C 3 25 A 25 25 A A C . C 3 26 A 26 26 A A C . C 3 27 G 27 27 G G C . C 3 28 G 28 28 G G C . C 3 29 U 29 29 U U C . C 3 30 C 30 30 C C C . C 3 31 G 31 31 G G C . C 3 32 G 32 32 G G C . D 4 1 C 1 1 C C D . D 4 2 C 2 2 C C D . D 4 3 G 3 3 G G D . D 4 4 A 4 4 A A D . D 4 5 C 5 5 C C D . D 4 6 C 6 6 C C D . D 4 7 U 7 7 U U D . D 4 8 U 8 8 U U D . D 4 9 C 9 9 C C D . D 4 10 G 10 10 G G D . D 4 11 G 11 11 G G D . D 4 12 C 12 12 C C D . D 4 13 C 13 13 C C D . D 4 14 A 14 14 A A D . D 4 15 C 15 15 C C D . D 4 16 C 16 16 C C D . D 4 17 U 17 17 U U D . D 4 18 G 18 18 G G D . D 4 19 A 19 19 A A D . D 4 20 C 20 20 C C D . D 4 21 A 21 21 A A D . D 4 22 G 22 22 G G D . D 4 23 U 23 23 U U D . D 4 24 C 24 24 C C D . D 4 25 C 25 25 C C D . D 4 26 U 26 26 U U D . D 4 27 G 27 27 G G D . D 4 28 U 28 28 U U D . D 4 29 G 29 29 G G D . D 4 30 C 30 30 C C D . D 4 31 G 31 31 G G D . D 4 32 G 32 32 G G D . # # loop_ _ihm_struct_assembly.id _ihm_struct_assembly.name _ihm_struct_assembly.description 1 'Complete assembly' ;Integrative structure of RNA 4WJ with the junction derived from the hairpin ribozyme determined using restraints from single molecule FRET data. ; # # loop_ _ihm_struct_assembly_details.id _ihm_struct_assembly_details.assembly_id _ihm_struct_assembly_details.parent_assembly_id _ihm_struct_assembly_details.entity_description _ihm_struct_assembly_details.entity_id _ihm_struct_assembly_details.asym_id _ihm_struct_assembly_details.entity_poly_segment_id 1 1 1 'RNA (37-MER) - strand a' 1 A 9 2 1 1 'RNA (37-MER) - strand b' 2 B 10 3 1 1 'RNA (32-MER) - strand c' 3 C 11 4 1 1 'RNA (32-MER) - strand d' 4 D 12 # # loop_ _ihm_external_reference_info.reference_id _ihm_external_reference_info.reference_provider _ihm_external_reference_info.reference_type _ihm_external_reference_info.reference _ihm_external_reference_info.refers_to _ihm_external_reference_info.associated_url _ihm_external_reference_info.details 1 Zenodo DOI 10.5281/zenodo.6640962 File https://zenodo.org/record/6640962 . # # loop_ _ihm_external_files.id _ihm_external_files.reference_id _ihm_external_files.file_path _ihm_external_files.content_type _ihm_external_files.file_size_bytes _ihm_external_files.details 1 1 Intensity_ratio_histogram_data/b5D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 2 1 Intensity_ratio_histogram_data/b5D_c8A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 3 1 Intensity_ratio_histogram_data/b5D_c24A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 4 1 Intensity_ratio_histogram_data/b5D_d10A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 5 1 Intensity_ratio_histogram_data/b5D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 6 1 Intensity_ratio_histogram_data/b5D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 7 1 Intensity_ratio_histogram_data/b8D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 8 1 Intensity_ratio_histogram_data/b8D_c8A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 9 1 Intensity_ratio_histogram_data/b8D_c24A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 10 1 Intensity_ratio_histogram_data/b8D_d10A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 11 1 Intensity_ratio_histogram_data/b8D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 12 1 Intensity_ratio_histogram_data/b8D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 13 1 Intensity_ratio_histogram_data/b8D_d28A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 14 1 Intensity_ratio_histogram_data/b11D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 15 1 Intensity_ratio_histogram_data/b11D_c8A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 16 1 Intensity_ratio_histogram_data/b11D_c24A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 17 1 Intensity_ratio_histogram_data/b11D_d10A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 18 1 Intensity_ratio_histogram_data/b11D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 19 1 Intensity_ratio_histogram_data/b11D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 20 1 Intensity_ratio_histogram_data/b11D_d28A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 21 1 Intensity_ratio_histogram_data/b14D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 22 1 Intensity_ratio_histogram_data/b14D_c8A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 23 1 Intensity_ratio_histogram_data/b14D_c24A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 24 1 Intensity_ratio_histogram_data/b14D_d10A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 25 1 Intensity_ratio_histogram_data/b14D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 26 1 Intensity_ratio_histogram_data/b14D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 27 1 Intensity_ratio_histogram_data/b14D_d28A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 28 1 Intensity_ratio_histogram_data/b27D_c24A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 29 1 Intensity_ratio_histogram_data/b27D_d10A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 30 1 Intensity_ratio_histogram_data/b27D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 31 1 Intensity_ratio_histogram_data/b27D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 32 1 Intensity_ratio_histogram_data/b27D_d28A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 33 1 Intensity_ratio_histogram_data/c8D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 34 1 Intensity_ratio_histogram_data/c8D_b14A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 35 1 Intensity_ratio_histogram_data/c8D_d10A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 36 1 Intensity_ratio_histogram_data/c8D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 37 1 Intensity_ratio_histogram_data/c8D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 38 1 Intensity_ratio_histogram_data/c8D_d28A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 39 1 Intensity_ratio_histogram_data/c29D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 40 1 Intensity_ratio_histogram_data/c29D_b14A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 41 1 Intensity_ratio_histogram_data/c29D_b27A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 42 1 Intensity_ratio_histogram_data/c29D_b33A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 43 1 Intensity_ratio_histogram_data/c29D_d23A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 44 1 Intensity_ratio_histogram_data/c29D_d26A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 45 1 Intensity_ratio_histogram_data/c29D_d28A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 46 1 Intensity_ratio_histogram_data/d7D_a12A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 47 1 Intensity_ratio_histogram_data/d7D_b14A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 48 1 Intensity_ratio_histogram_data/d7D_b27A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 49 1 Intensity_ratio_histogram_data/d7D_b33A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 50 1 Intensity_ratio_histogram_data/d7D_c8A_data.txt 'Input data or restraints' . 'Intensity ratio histogram, PDA fit, and weighted residuals of the fit' 51 1 Rigid_Body_Docking_Starting_structures/helixA.pdb 'Input data or restraints' . . 52 1 Rigid_Body_Docking_Starting_structures/helixB.pdb 'Input data or restraints' . . 53 1 Rigid_Body_Docking_Starting_structures/helixC.pdb 'Input data or restraints' . . 54 1 Rigid_Body_Docking_Starting_structures/helixD.pdb 'Input data or restraints' . . # # loop_ _ihm_dataset_list.id _ihm_dataset_list.data_type _ihm_dataset_list.database_hosted _ihm_dataset_list.details 1 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 2 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 3 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 4 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 5 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 6 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 7 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 8 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 9 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 10 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 11 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 12 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 13 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 14 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 15 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 16 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 17 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 18 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 19 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 20 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 21 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 22 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 23 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 24 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 25 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 26 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 27 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 28 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 29 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 30 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 31 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 32 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 33 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 34 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 35 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 36 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 37 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 38 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 39 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 40 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 41 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 42 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 43 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 44 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 45 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 46 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 47 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 48 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 49 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 50 'Single molecule FRET data' NO 'FRET data used for the rigid body docking and screening of structural models' 51 'De Novo model' NO 'Starting models used for the RNA helices' 52 'De Novo model' NO 'Starting models used for the RNA helices' 53 'De Novo model' NO 'Starting models used for the RNA helices' 54 'De Novo model' NO 'Starting models used for the RNA helices' # # loop_ _ihm_dataset_group.id _ihm_dataset_group.name _ihm_dataset_group.application _ihm_dataset_group.details 1 . . . 2 . . . # # loop_ _ihm_dataset_group_link.group_id _ihm_dataset_group_link.dataset_list_id 1 1 1 2 1 3 1 4 1 5 1 6 1 7 1 8 1 9 1 10 1 11 1 12 1 13 1 14 1 15 1 16 1 17 1 18 1 19 1 20 1 21 1 22 1 23 1 24 1 25 1 26 1 27 1 28 1 29 1 30 1 31 1 32 1 33 1 34 1 35 1 36 1 37 1 38 1 39 1 40 1 41 1 42 1 43 1 44 1 45 1 46 1 47 1 48 1 49 1 50 1 51 1 52 1 53 1 54 2 1 2 2 2 3 2 4 2 5 2 6 2 7 2 8 2 9 2 10 2 11 2 12 2 13 2 14 2 15 2 16 2 17 2 18 2 19 2 20 2 21 2 22 2 23 2 24 2 25 2 26 2 27 2 28 2 29 2 30 2 31 2 32 2 33 2 34 2 35 2 36 2 37 2 38 2 39 2 40 2 41 2 42 2 43 2 44 2 45 2 46 2 47 2 48 2 49 2 50 2 51 2 52 2 53 2 54 # # loop_ _ihm_dataset_external_reference.id _ihm_dataset_external_reference.dataset_list_id _ihm_dataset_external_reference.file_id 1 1 1 2 2 2 3 3 3 4 4 4 5 5 5 6 6 6 7 7 7 8 8 8 9 9 9 10 10 10 11 11 11 12 12 12 13 13 13 14 14 14 15 15 15 16 16 16 17 17 17 18 18 18 19 19 19 20 20 20 21 21 21 22 22 22 23 23 23 24 24 24 25 25 25 26 26 26 27 27 27 28 28 28 29 29 29 30 30 30 31 31 31 32 32 32 33 33 33 34 34 34 35 35 35 36 36 36 37 37 37 38 38 38 39 39 39 40 40 40 41 41 41 42 42 42 43 43 43 44 44 44 45 45 45 46 46 46 47 47 47 48 48 48 49 49 49 50 50 50 51 51 51 52 52 52 53 53 53 54 54 54 # # loop_ _ihm_model_representation.id _ihm_model_representation.name _ihm_model_representation.details 1 . . # # loop_ _ihm_model_representation_details.id _ihm_model_representation_details.representation_id _ihm_model_representation_details.entity_id _ihm_model_representation_details.entity_description _ihm_model_representation_details.entity_asym_id _ihm_model_representation_details.entity_poly_segment_id _ihm_model_representation_details.model_object_primitive _ihm_model_representation_details.starting_model_id _ihm_model_representation_details.model_mode _ihm_model_representation_details.model_granularity _ihm_model_representation_details.model_object_count _ihm_model_representation_details.description 1 1 1 'RNA (37-MER) - strand a' A 1 atomistic 1 rigid by-atom . . 2 1 1 'RNA (37-MER) - strand a' A 2 atomistic 2 rigid by-atom . . 3 1 2 'RNA (37-MER) - strand b' B 3 atomistic 3 rigid by-atom . . 4 1 2 'RNA (37-MER) - strand b' B 4 atomistic 4 rigid by-atom . . 5 1 3 'RNA (32-MER) - strand c' C 5 atomistic 5 rigid by-atom . . 6 1 3 'RNA (32-MER) - strand c' C 6 atomistic 6 rigid by-atom . . 7 1 4 'RNA (32-MER) - strand d' D 7 atomistic 7 rigid by-atom . . 8 1 4 'RNA (32-MER) - strand d' D 8 atomistic 8 rigid by-atom . . # # loop_ _ihm_starting_model_details.starting_model_id _ihm_starting_model_details.entity_id _ihm_starting_model_details.entity_description _ihm_starting_model_details.asym_id _ihm_starting_model_details.entity_poly_segment_id _ihm_starting_model_details.starting_model_source _ihm_starting_model_details.starting_model_auth_asym_id _ihm_starting_model_details.starting_model_sequence_offset _ihm_starting_model_details.dataset_list_id _ihm_starting_model_details.description 1 1 'RNA (37-MER) - strand a' A 1 'ab initio model' A 0 51 . 2 1 'RNA (37-MER) - strand a' A 2 'ab initio model' A 0 52 . 3 2 'RNA (37-MER) - strand b' B 3 'ab initio model' B 0 52 . 4 2 'RNA (37-MER) - strand b' B 4 'ab initio model' B 0 53 . 5 3 'RNA (32-MER) - strand c' C 5 'ab initio model' C 0 53 . 6 3 'RNA (32-MER) - strand c' C 6 'ab initio model' C 0 54 . 7 4 'RNA (32-MER) - strand d' D 7 'ab initio model' D 0 54 . 8 4 'RNA (32-MER) - strand d' D 8 'ab initio model' D 0 51 . # # loop_ _ihm_modeling_protocol.id _ihm_modeling_protocol.protocol_name _ihm_modeling_protocol.num_steps 1 'Modeling using FPS' 3 2 'Modeling using FPS and Refinement by MD' 4 # # loop_ _ihm_modeling_protocol_details.id _ihm_modeling_protocol_details.protocol_id _ihm_modeling_protocol_details.step_id _ihm_modeling_protocol_details.struct_assembly_id _ihm_modeling_protocol_details.dataset_group_id _ihm_modeling_protocol_details.step_name _ihm_modeling_protocol_details.step_method _ihm_modeling_protocol_details.num_models_begin _ihm_modeling_protocol_details.num_models_end _ihm_modeling_protocol_details.multi_scale_flag _ihm_modeling_protocol_details.multi_state_flag _ihm_modeling_protocol_details.ordered_flag _ihm_modeling_protocol_details.ensemble_flag _ihm_modeling_protocol_details.software_id _ihm_modeling_protocol_details.script_file_id _ihm_modeling_protocol_details.description 1 1 1 1 1 'Rigid body docking' . 0 1000 NO YES NO YES 1 . . 2 1 2 1 1 Refinement . 1000 1000 NO YES NO YES 1 . . 3 1 3 1 1 'Error estimation (Bootstrapping)' . 1 100 NO YES NO YES 1 . . 4 2 1 1 2 'Rigid body docking' . 0 1000 NO YES NO YES 1 . . 5 2 2 1 2 Refinement . 1000 1000 NO YES NO YES 1 . . 6 2 3 1 2 'Error estimation (Bootstrapping)' . 1 100 NO YES NO YES 1 . . 7 2 4 1 2 'Refinement by restrained MD' 'MD simulations' 1 10000 NO YES NO YES 5 . . # # loop_ _ihm_modeling_post_process.id _ihm_modeling_post_process.protocol_id _ihm_modeling_post_process.analysis_id _ihm_modeling_post_process.step_id _ihm_modeling_post_process.type _ihm_modeling_post_process.feature _ihm_modeling_post_process.num_models_begin _ihm_modeling_post_process.num_models_end _ihm_modeling_post_process.struct_assembly_id _ihm_modeling_post_process.dataset_group_id _ihm_modeling_post_process.software_id _ihm_modeling_post_process.script_file_id _ihm_modeling_post_process.details 1 1 1 1 cluster RMSD . . 1 1 4 . . 2 2 1 1 filter other 10000 3 1 2 1 . . # # loop_ _ihm_model_list.model_id _ihm_model_list.model_name _ihm_model_list.assembly_id _ihm_model_list.protocol_id _ihm_model_list.representation_id 1 'Best RBD model for (ad)_a' 1 1 1 2 'Cluster representative from RBD error estimation for (ad)_a' 1 1 1 3 'Cluster representative from RBD error estimation for (ad)_a' 1 1 1 4 'Cluster representative from RBD error estimation for (ad)_a' 1 1 1 5 'Cluster representative from RBD error estimation for (ad)_a' 1 1 1 6 'Cluster representative from RBD error estimation for (ad)_a' 1 1 1 7 'Cluster representative from RBD error estimation for (ad)_a' 1 1 1 8 'MD model for (ad)_a best describing the experimental data' 1 2 1 9 'Ensemble member from MD for (ad)_a describing the experimental data' 1 2 1 10 'Ensemble member from MD for (ad)_a describing the experimental data' 1 2 1 # # loop_ _ihm_model_group.id _ihm_model_group.name _ihm_model_group.details 1 (ad)_a . 2 refined_(ad)_a . # # loop_ _ihm_model_group_link.group_id _ihm_model_group_link.model_id 1 1 1 2 1 3 1 4 1 5 1 6 1 7 2 8 2 9 2 10 # # loop_ # # loop_ _atom_type.symbol C H N O P # # loop_ _ihm_ensemble_info.ensemble_id _ihm_ensemble_info.ensemble_name _ihm_ensemble_info.post_process_id _ihm_ensemble_info.model_group_id _ihm_ensemble_info.ensemble_clustering_method _ihm_ensemble_info.ensemble_clustering_feature _ihm_ensemble_info.num_ensemble_models _ihm_ensemble_info.num_ensemble_models_deposited _ihm_ensemble_info.ensemble_precision_value _ihm_ensemble_info.ensemble_file_id _ihm_ensemble_info.details _ihm_ensemble_info.sub_sample_flag _ihm_ensemble_info.sub_sampling_type 1 'Ensemble for (ad)_a from rigid body docking' 1 1 Other RMSD 7 7 . . . NO . 2 'Ensemble of single structures for (ad)_a after MD refinement' 1 2 Other other 3 3 . . . NO . # # loop_ _ihm_multi_state_modeling.state_id _ihm_multi_state_modeling.state_group_id _ihm_multi_state_modeling.population_fraction _ihm_multi_state_modeling.state_type _ihm_multi_state_modeling.state_name _ihm_multi_state_modeling.experiment_type _ihm_multi_state_modeling.details 1 1 0.739 'structural conformations' (ad)_a 'Single molecule' 'The experiments support the existence of multiple states; here only one state has been modeled.' 2 1 . . . . . # # loop_ _ihm_multi_state_model_group_link.state_id _ihm_multi_state_model_group_link.model_group_id 1 1 1 2 # # loop_ _flr_experiment.ordinal_id _flr_experiment.id _flr_experiment.instrument_id _flr_experiment.inst_setting_id _flr_experiment.exp_condition_id _flr_experiment.sample_id _flr_experiment.details 1 1 1 1 1 1 . 2 1 1 1 1 2 . 3 1 1 1 1 3 . 4 1 1 1 1 4 . 5 1 1 1 1 5 . 6 1 1 1 1 6 . 7 1 1 1 1 7 . 8 1 1 1 1 8 . 9 1 1 1 1 9 . 10 1 1 1 1 10 . 11 1 1 1 1 11 . 12 1 1 1 1 12 . 13 1 1 1 1 13 . 14 1 1 1 1 14 . 15 1 1 1 1 15 . 16 1 1 1 1 16 . 17 1 1 1 1 17 . 18 1 1 1 1 18 . 19 1 1 1 1 19 . 20 1 1 1 1 20 . 21 1 1 1 1 21 . 22 1 1 1 1 22 . 23 1 1 1 1 23 . 24 1 1 1 1 24 . 25 1 1 1 1 25 . 26 1 1 1 1 26 . 27 1 1 1 1 27 . 28 1 1 1 1 28 . 29 1 1 1 1 29 . 30 1 1 1 1 30 . 31 1 1 1 1 31 . 32 1 1 1 1 32 . 33 1 1 1 1 33 . 34 1 1 1 1 34 . 35 1 1 1 1 35 . 36 1 1 1 1 36 . 37 1 1 1 1 37 . 38 1 1 1 1 38 . 39 1 1 1 1 39 . 40 1 1 1 1 40 . 41 1 1 1 1 41 . 42 1 1 1 1 42 . 43 1 1 1 1 43 . 44 1 1 1 1 44 . 45 1 1 1 1 45 . 46 1 1 1 1 46 . 47 1 1 1 1 47 . 48 1 1 1 1 48 . 49 1 1 1 1 49 . 50 1 1 1 1 50 . # # loop_ _flr_inst_setting.id _flr_inst_setting.details 1 'Size of the observation volume: The focal geometry is obtained by determining the diffusion correlation time of 200 +- 13 microseconds for Rhodamine 110 and knowing its diffusion coefficient of 0.34 +- 0.03 micrometer^2/millisecond.' # # loop_ _flr_exp_condition.id _flr_exp_condition.details 1 . # # loop_ _flr_instrument.id _flr_instrument.details 1 'The donor molecules were excited by a linearly polarized, active-mode-locked Argon-ion laser (Innova Saber, Coherent, Santa Clara, CA, USA, 496.5 nm, 73.5 MHz, ~ 300 ps) or by a 485 nm diode laser (LDH-D-C 485, Picoquant, Berlin, Germany) operating at 64 MHz. The laser light is focused into the solution with sample molecules by a 60x/1.2 water immersion objective (Olympus UPLSAPO 60XW). The collected fluorescence is divided initially into its parallel and perpendicular components via a polarizing beamsplitter cube (VISHT11, Gsaenger, (Planegg, Germany)) and then into a wavelength ranges below and above 595 nm by using a dichroic beamsplitter (595 DCXR, AHF, Tuebingen, Germany). Additionally, red (HQ 720/150 nm for Cy5) and green (HQ 533/46 nm for Alexa 488 and Rh110) bandpass filters (AHF, Tuebingen, Germany) in front of the detectors ensure that only fluorescence photons coming from the acceptor and donor molecules are registered. Detection is performed using four avalanche photodiodes (SPCM-AQR-14, Laser Components, Germany or alternatively for the green channels PDM050CTC, or tau-SPAD-100, both PicoQuant, Berlin, Germany). The signals from all detectors are guided through a passive delay unit and two routers to two synchronized time-correlated single photon counting boards (SPC 132 or SPC 832, Becker and Hickl, Berlin, Germany) connected to a PC for data storage.' # # loop_ _flr_entity_assembly.ordinal_id _flr_entity_assembly.assembly_id _flr_entity_assembly.entity_id _flr_entity_assembly.num_copies _flr_entity_assembly.entity_description 1 1 1 1 'RNA (37-MER) - strand a' 2 1 2 1 'RNA (37-MER) - strand b' 3 1 3 1 'RNA (32-MER) - strand c' 4 1 4 1 'RNA (32-MER) - strand d' # # loop_ _flr_sample_condition.id _flr_sample_condition.details 1 'Preparation: Ultrapure labeled RNA and DNA with hexamethylen linkers (PAGE Grade), and all unlabeled sequences were synthesized as described in Sindbert et al. (J. Am. Chem. Soc., 2011, 133 (8), pp 2463-2480) or purchased from Purimex (Grebenstein, Germany). The hybridization buffer contained 20 mM KH2PO4/K2HPO4, 100 mM KCl, and 20 mM MgCl2, pH 6.5. The concentration of donor-labeled (or acceptor labeled for acceptor-only (AO) samples) RNA single strand in the buffer ranged between 0.5 and 2 microM. For FRET molecules the ratio between the amount of donor, acceptor and the two unlabeled strands was 1:3:4:4. For donor and acceptor only molecules the ratio of labeled to the three unlabeled strands was 1:4:4:4. The solution was heated up to a temperature of 85 degree Celsius inside a thermo-cycler (primus 96 advanced, peqLab, Erlangen, Germany) with 0.1 (degree Celsius)/s and was then cooled down to 27 degree Celsius with 2 (degree Celsius)/h. It was then quickly cooled down to 4 degree Celsius.; Measurement: The measurement buffer contained 20 mM KH2PO4/K2HPO4, 100 mM KCl and between 0.03 and 20 mM MgCl2, pH 6.5. Additionally, approximately 0.5 mM of Trolox was added.' # # loop_ _flr_sample.id _flr_sample.entity_assembly_id _flr_sample.num_of_probes _flr_sample.sample_condition_id _flr_sample.sample_description _flr_sample.sample_details _flr_sample.solvent_phase 1 1 2 1 b5D_a12A . liquid 2 1 2 1 b5D_c8A . liquid 3 1 2 1 b5D_c24A . liquid 4 1 2 1 b5D_d10A . liquid 5 1 2 1 b5D_d23A . liquid 6 1 2 1 b5D_d26A . liquid 7 1 2 1 b8D_a12A . liquid 8 1 2 1 b8D_c8A . liquid 9 1 2 1 b8D_c24A . liquid 10 1 2 1 b8D_d10A . liquid 11 1 2 1 b8D_d23A . liquid 12 1 2 1 b8D_d26A . liquid 13 1 2 1 b8D_d28A . liquid 14 1 2 1 b11D_a12A . liquid 15 1 2 1 b11D_c8A . liquid 16 1 2 1 b11D_c24A . liquid 17 1 2 1 b11D_d10A . liquid 18 1 2 1 b11D_d23A . liquid 19 1 2 1 b11D_d26A . liquid 20 1 2 1 b11D_d28A . liquid 21 1 2 1 b14D_a12A . liquid 22 1 2 1 b14D_c8A . liquid 23 1 2 1 b14D_c24A . liquid 24 1 2 1 b14D_d10A . liquid 25 1 2 1 b14D_d23A . liquid 26 1 2 1 b14D_d26A . liquid 27 1 2 1 b14D_d28A . liquid 28 1 2 1 b27D_c24A . liquid 29 1 2 1 b27D_d10A . liquid 30 1 2 1 b27D_d23A . liquid 31 1 2 1 b27D_d26A . liquid 32 1 2 1 b27D_d28A . liquid 33 1 2 1 c8D_a12A . liquid 34 1 2 1 c8D_b14A . liquid 35 1 2 1 c8D_d10A . liquid 36 1 2 1 c8D_d23A . liquid 37 1 2 1 c8D_d26A . liquid 38 1 2 1 c8D_d28A . liquid 39 1 2 1 c29D_a12A . liquid 40 1 2 1 c29D_b14A . liquid 41 1 2 1 c29D_b27A . liquid 42 1 2 1 c29D_b33A . liquid 43 1 2 1 c29D_d23A . liquid 44 1 2 1 c29D_d26A . liquid 45 1 2 1 c29D_d28A . liquid 46 1 2 1 d7D_a12A . liquid 47 1 2 1 d7D_b14A . liquid 48 1 2 1 d7D_b27A . liquid 49 1 2 1 d7D_b33A . liquid 50 1 2 1 d7D_c8A . liquid # # loop_ _flr_probe_list.probe_id _flr_probe_list.chromophore_name _flr_probe_list.reactive_probe_flag _flr_probe_list.reactive_probe_name _flr_probe_list.probe_origin _flr_probe_list.probe_link_type 1 Alexa488 YES 'Alexa488-tetrafluor-phenoxy ester triethylammonium' extrinsic covalent 2 Cy5 YES 'Sulfo-Cy5-N-hydroxy succinimidylester' extrinsic covalent # # loop_ _flr_probe_descriptor.probe_id _flr_probe_descriptor.reactive_probe_chem_descriptor_id _flr_probe_descriptor.chromophore_chem_descriptor_id _flr_probe_descriptor.chromophore_center_atom 1 1 2 C9 2 4 5 C3 # # loop_ _flr_sample_probe_details.sample_probe_id _flr_sample_probe_details.sample_id _flr_sample_probe_details.probe_id _flr_sample_probe_details.fluorophore_type _flr_sample_probe_details.description _flr_sample_probe_details.poly_probe_position_id 1 1 1 donor 'Donor in b5D_a12A' 1 2 1 2 acceptor 'Acceptor in b5D_a12A' 2 3 2 1 donor 'Donor in b5D_c8A' 1 4 2 2 acceptor 'Acceptor in b5D_c8A' 3 5 3 1 donor 'Donor in b5D_c24A' 1 6 3 2 acceptor 'Acceptor in b5D_c24A' 4 7 4 1 donor 'Donor in b5D_d10A' 1 8 4 2 acceptor 'Acceptor in b5D_d10A' 5 9 5 1 donor 'Donor in b5D_d23A' 1 10 5 2 acceptor 'Acceptor in b5D_d23A' 6 11 6 1 donor 'Donor in b5D_d26A' 1 12 6 2 acceptor 'Acceptor in b5D_d26A' 7 13 7 1 donor 'Donor in b8D_a12A' 8 14 7 2 acceptor 'Acceptor in b8D_a12A' 2 15 8 1 donor 'Donor in b8D_c8A' 8 16 8 2 acceptor 'Acceptor in b8D_c8A' 3 17 9 1 donor 'Donor in b8D_c24A' 8 18 9 2 acceptor 'Acceptor in b8D_c24A' 4 19 10 1 donor 'Donor in b8D_d10A' 8 20 10 2 acceptor 'Acceptor in b8D_d10A' 5 21 11 1 donor 'Donor in b8D_d23A' 8 22 11 2 acceptor 'Acceptor in b8D_d23A' 6 23 12 1 donor 'Donor in b8D_d26A' 8 24 12 2 acceptor 'Acceptor in b8D_d26A' 7 25 13 1 donor 'Donor in b8D_d28A' 8 26 13 2 acceptor 'Acceptor in b8D_d28A' 9 27 14 1 donor 'Donor in b11D_a12A' 10 28 14 2 acceptor 'Acceptor in b11D_a12A' 2 29 15 1 donor 'Donor in b11D_c8A' 10 30 15 2 acceptor 'Acceptor in b11D_c8A' 3 31 16 1 donor 'Donor in b11D_c24A' 10 32 16 2 acceptor 'Acceptor in b11D_c24A' 4 33 17 1 donor 'Donor in b11D_d10A' 10 34 17 2 acceptor 'Acceptor in b11D_d10A' 5 35 18 1 donor 'Donor in b11D_d23A' 10 36 18 2 acceptor 'Acceptor in b11D_d23A' 6 37 19 1 donor 'Donor in b11D_d26A' 10 38 19 2 acceptor 'Acceptor in b11D_d26A' 7 39 20 1 donor 'Donor in b11D_d28A' 10 40 20 2 acceptor 'Acceptor in b11D_d28A' 9 41 21 1 donor 'Donor in b14D_a12A' 11 42 21 2 acceptor 'Acceptor in b14D_a12A' 2 43 22 1 donor 'Donor in b14D_c8A' 11 44 22 2 acceptor 'Acceptor in b14D_c8A' 3 45 23 1 donor 'Donor in b14D_c24A' 11 46 23 2 acceptor 'Acceptor in b14D_c24A' 4 47 24 1 donor 'Donor in b14D_d10A' 11 48 24 2 acceptor 'Acceptor in b14D_d10A' 5 49 25 1 donor 'Donor in b14D_d23A' 11 50 25 2 acceptor 'Acceptor in b14D_d23A' 6 51 26 1 donor 'Donor in b14D_d26A' 11 52 26 2 acceptor 'Acceptor in b14D_d26A' 7 53 27 1 donor 'Donor in b14D_d28A' 11 54 27 2 acceptor 'Acceptor in b14D_d28A' 9 55 28 1 donor 'Donor in b27D_c24A' 12 56 28 2 acceptor 'Acceptor in b27D_c24A' 4 57 29 1 donor 'Donor in b27D_d10A' 12 58 29 2 acceptor 'Acceptor in b27D_d10A' 5 59 30 1 donor 'Donor in b27D_d23A' 12 60 30 2 acceptor 'Acceptor in b27D_d23A' 6 61 31 1 donor 'Donor in b27D_d26A' 12 62 31 2 acceptor 'Acceptor in b27D_d26A' 7 63 32 1 donor 'Donor in b27D_d28A' 12 64 32 2 acceptor 'Acceptor in b27D_d28A' 9 65 33 1 donor 'Donor in c8D_a12A' 13 66 33 2 acceptor 'Acceptor in c8D_a12A' 2 67 34 1 donor 'Donor in c8D_b14A' 13 68 34 2 acceptor 'Acceptor in c8D_b14A' 14 69 35 1 donor 'Donor in c8D_d10A' 13 70 35 2 acceptor 'Acceptor in c8D_d10A' 5 71 36 1 donor 'Donor in c8D_d23A' 13 72 36 2 acceptor 'Acceptor in c8D_d23A' 6 73 37 1 donor 'Donor in c8D_d26A' 13 74 37 2 acceptor 'Acceptor in c8D_d26A' 7 75 38 1 donor 'Donor in c8D_d28A' 13 76 38 2 acceptor 'Acceptor in c8D_d28A' 9 77 39 1 donor 'Donor in c29D_a12A' 15 78 39 2 acceptor 'Acceptor in c29D_a12A' 2 79 40 1 donor 'Donor in c29D_b14A' 15 80 40 2 acceptor 'Acceptor in c29D_b14A' 14 81 41 1 donor 'Donor in c29D_b27A' 15 82 41 2 acceptor 'Acceptor in c29D_b27A' 16 83 42 1 donor 'Donor in c29D_b33A' 15 84 42 2 acceptor 'Acceptor in c29D_b33A' 17 85 43 1 donor 'Donor in c29D_d23A' 15 86 43 2 acceptor 'Acceptor in c29D_d23A' 6 87 44 1 donor 'Donor in c29D_d26A' 15 88 44 2 acceptor 'Acceptor in c29D_d26A' 7 89 45 1 donor 'Donor in c29D_d28A' 15 90 45 2 acceptor 'Acceptor in c29D_d28A' 9 91 46 1 donor 'Donor in d7D_a12A' 18 92 46 2 acceptor 'Acceptor in d7D_a12A' 2 93 47 1 donor 'Donor in d7D_b14A' 18 94 47 2 acceptor 'Acceptor in d7D_b14A' 14 95 48 1 donor 'Donor in d7D_b27A' 18 96 48 2 acceptor 'Acceptor in d7D_b27A' 16 97 49 1 donor 'Donor in d7D_b33A' 18 98 49 2 acceptor 'Acceptor in d7D_b33A' 17 99 50 1 donor 'Donor in d7D_c8A' 18 100 50 2 acceptor 'Acceptor in d7D_c8A' 3 # # loop_ _flr_poly_probe_position.id _flr_poly_probe_position.entity_id _flr_poly_probe_position.entity_description _flr_poly_probe_position.asym_id _flr_poly_probe_position.seq_id _flr_poly_probe_position.comp_id _flr_poly_probe_position.atom_id _flr_poly_probe_position.mutation_flag _flr_poly_probe_position.modification_flag _flr_poly_probe_position.auth_name 1 2 'RNA (37-MER) - strand b' . 5 U C5 NO YES b5D 2 1 'RNA (37-MER) - strand a' . 12 U C5 NO YES a12A 3 3 'RNA (32-MER) - strand c' . 8 U C5 NO YES c8A 4 3 'RNA (32-MER) - strand c' . 24 G N2 NO YES c24A 5 4 'RNA (32-MER) - strand d' . 10 G N2 NO YES d10A 6 4 'RNA (32-MER) - strand d' . 23 U C5 NO YES d23A 7 4 'RNA (32-MER) - strand d' . 26 U C5 NO YES d26A 8 2 'RNA (37-MER) - strand b' . 8 U C5 NO YES b8D 9 4 'RNA (32-MER) - strand d' . 28 U C5 NO YES d28A 10 2 'RNA (37-MER) - strand b' . 11 U C5 NO YES b11D 11 2 'RNA (37-MER) - strand b' . 14 U C5 NO YES b14D 12 2 'RNA (37-MER) - strand b' . 27 U C5 NO YES b27D 13 3 'RNA (32-MER) - strand c' . 8 U C5 NO YES c8D 14 2 'RNA (37-MER) - strand b' . 14 U C5 NO YES b14A 15 3 'RNA (32-MER) - strand c' . 29 U C5 NO YES c29D 16 2 'RNA (37-MER) - strand b' . 27 U C5 NO YES b27A 17 2 'RNA (37-MER) - strand b' . 33 U C5 NO YES b33A 18 4 'RNA (32-MER) - strand d' . 7 U C5 NO YES d7D # # loop_ _flr_poly_probe_position_modified.id _flr_poly_probe_position_modified.chem_descriptor_id _flr_poly_probe_position_modified.atom_id 1 3 C5 2 3 C5 3 3 C5 4 6 N2 5 6 N2 6 3 C5 7 3 C5 8 3 C5 9 3 C5 10 3 C5 11 3 C5 12 3 C5 13 3 C5 14 3 C5 15 3 C5 16 3 C5 17 3 C5 18 3 C5 # # loop_ _flr_poly_probe_conjugate.id _flr_poly_probe_conjugate.sample_probe_id _flr_poly_probe_conjugate.chem_descriptor_id _flr_poly_probe_conjugate.ambiguous_stoichiometry_flag _flr_poly_probe_conjugate.probe_stoichiometry 1 1 7 NO . 2 3 7 NO . 3 5 7 NO . 4 7 7 NO . 5 9 7 NO . 6 11 7 NO . 7 13 7 NO . 8 15 7 NO . 9 17 7 NO . 10 19 7 NO . 11 21 7 NO . 12 23 7 NO . 13 25 7 NO . 14 27 7 NO . 15 29 7 NO . 16 31 7 NO . 17 33 7 NO . 18 35 7 NO . 19 37 7 NO . 20 39 7 NO . 21 41 7 NO . 22 43 7 NO . 23 45 7 NO . 24 47 7 NO . 25 49 7 NO . 26 51 7 NO . 27 53 7 NO . 28 55 7 NO . 29 57 7 NO . 30 59 7 NO . 31 61 7 NO . 32 63 7 NO . 33 65 7 NO . 34 67 7 NO . 35 69 7 NO . 36 71 7 NO . 37 73 7 NO . 38 75 7 NO . 39 77 7 NO . 40 79 7 NO . 41 81 7 NO . 42 83 7 NO . 43 85 7 NO . 44 87 7 NO . 45 89 7 NO . 46 91 7 NO . 47 93 7 NO . 48 95 7 NO . 49 97 7 NO . 50 99 7 NO . 51 2 8 NO . 52 4 8 NO . 53 6 9 NO . 54 8 9 NO . 55 10 8 NO . 56 12 8 NO . 57 14 8 NO . 58 16 8 NO . 59 18 9 NO . 60 20 9 NO . 61 22 8 NO . 62 24 8 NO . 63 26 8 NO . 64 28 8 NO . 65 30 8 NO . 66 32 9 NO . 67 34 9 NO . 68 36 8 NO . 69 38 8 NO . 70 40 8 NO . 71 42 8 NO . 72 44 8 NO . 73 46 9 NO . 74 48 9 NO . 75 50 8 NO . 76 52 8 NO . 77 54 8 NO . 78 56 9 NO . 79 58 9 NO . 80 60 8 NO . 81 62 8 NO . 82 64 8 NO . 83 66 8 NO . 84 68 8 NO . 85 70 9 NO . 86 72 8 NO . 87 74 8 NO . 88 76 8 NO . 89 78 8 NO . 90 80 8 NO . 91 82 8 NO . 92 84 8 NO . 93 86 8 NO . 94 88 8 NO . 95 90 8 NO . 96 92 8 NO . 97 94 8 NO . 98 96 8 NO . 99 98 8 NO . 100 100 8 NO . # # loop_ _flr_fret_forster_radius.id _flr_fret_forster_radius.donor_probe_id _flr_fret_forster_radius.acceptor_probe_id _flr_fret_forster_radius.forster_radius _flr_fret_forster_radius.reduced_forster_radius 1 1 2 52.000 53.970 # # loop_ _flr_fret_calibration_parameters.id _flr_fret_calibration_parameters.phi_acceptor _flr_fret_calibration_parameters.alpha _flr_fret_calibration_parameters.alpha_sd _flr_fret_calibration_parameters.gG_gR_ratio _flr_fret_calibration_parameters.beta _flr_fret_calibration_parameters.gamma _flr_fret_calibration_parameters.delta _flr_fret_calibration_parameters.a_b 1 0.330 2.400 . 0.400 . . . 0.800 2 0.340 2.200 . 0.400 . . . 0.800 3 0.320 1.300 . 0.730 . . . 0.800 4 0.350 1.200 . 0.710 . . . 0.800 5 0.310 2.400 . 0.400 . . . 0.800 6 0.410 3.000 . 0.320 . . . 0.800 7 0.330 2.500 . 0.400 . . . 0.800 8 0.340 1.300 . 0.700 . . . 0.800 9 0.320 1.400 . 0.740 . . . 0.800 10 0.350 1.300 . 0.740 . . . 0.800 11 0.310 1.400 . 0.850 . . . 0.800 12 0.410 2.600 . 0.320 . . . 0.800 13 0.470 1.400 . 0.850 . . . 0.800 14 0.330 2.300 . 0.400 . . . 0.800 15 0.340 1.300 . 0.800 . . . 0.800 16 0.320 1.400 . 0.710 . . . 0.800 17 0.350 1.500 . 0.710 . . . 0.800 18 0.310 1.300 . 0.670 . . . 0.800 19 0.470 1.200 . 0.700 . . . 0.800 20 0.330 2.900 . 0.400 . . . 0.800 21 0.350 1.900 . 0.740 . . . 0.800 22 0.310 1.500 . 0.850 . . . 0.800 23 0.410 2.700 . 0.400 . . . 0.800 24 0.470 1.300 . 0.850 . . . 0.800 25 0.350 1.500 . 0.740 . . . 0.800 26 0.310 1.200 . 0.850 . . . 0.800 27 0.410 0.700 . 0.750 . . . 0.800 28 0.470 1.200 . 0.750 . . . 0.800 29 0.330 2.800 . 0.320 . . . 0.800 30 0.330 2.700 . 0.400 . . . 0.800 31 0.350 1.500 . 0.730 . . . 0.800 32 0.310 2.600 . 0.320 . . . 0.800 33 0.410 2.200 . 0.400 . . . 0.800 34 0.470 1.400 . 0.670 . . . 0.800 35 0.330 1.500 . 0.850 . . . 0.800 36 0.320 2.000 . 0.800 . . . 0.800 37 0.460 1.900 . 0.800 . . . 0.800 38 0.310 1.300 . 0.800 . . . 0.800 39 0.410 2.300 . 0.400 . . . 0.800 40 0.470 1.300 . 0.800 . . . 0.800 41 0.330 3.200 . 0.350 . . . 0.800 42 0.330 1.600 . 0.800 . . . 0.800 43 0.320 1.900 . 0.800 . . . 0.800 44 0.460 1.500 . 0.690 . . . 0.800 45 0.340 1.300 . 0.750 . . . 0.800 # # loop_ _flr_fret_analysis.id _flr_fret_analysis.experiment_id _flr_fret_analysis.type _flr_fret_analysis.sample_probe_id_1 _flr_fret_analysis.sample_probe_id_2 _flr_fret_analysis.forster_radius_id _flr_fret_analysis.dataset_list_id _flr_fret_analysis.external_file_id _flr_fret_analysis.software_id 1 1 intensity-based 1 2 1 1 1 3 2 1 intensity-based 3 4 1 1 2 3 3 1 intensity-based 5 6 1 1 3 3 4 1 intensity-based 7 8 1 1 4 3 5 1 intensity-based 9 10 1 1 5 3 6 1 intensity-based 11 12 1 1 6 3 7 1 intensity-based 13 14 1 1 7 3 8 1 intensity-based 15 16 1 1 8 3 9 1 intensity-based 17 18 1 1 9 3 10 1 intensity-based 19 20 1 1 10 3 11 1 intensity-based 21 22 1 1 11 3 12 1 intensity-based 23 24 1 1 12 3 13 1 intensity-based 25 26 1 1 13 3 14 1 intensity-based 27 28 1 1 14 3 15 1 intensity-based 29 30 1 1 15 3 16 1 intensity-based 31 32 1 1 16 3 17 1 intensity-based 33 34 1 1 17 3 18 1 intensity-based 35 36 1 1 18 3 19 1 intensity-based 37 38 1 1 19 3 20 1 intensity-based 39 40 1 1 20 3 21 1 intensity-based 41 42 1 1 21 3 22 1 intensity-based 43 44 1 1 22 3 23 1 intensity-based 45 46 1 1 23 3 24 1 intensity-based 47 48 1 1 24 3 25 1 intensity-based 49 50 1 1 25 3 26 1 intensity-based 51 52 1 1 26 3 27 1 intensity-based 53 54 1 1 27 3 28 1 intensity-based 55 56 1 1 28 3 29 1 intensity-based 57 58 1 1 29 3 30 1 intensity-based 59 60 1 1 30 3 31 1 intensity-based 61 62 1 1 31 3 32 1 intensity-based 63 64 1 1 32 3 33 1 intensity-based 65 66 1 1 33 3 34 1 intensity-based 67 68 1 1 34 3 35 1 intensity-based 69 70 1 1 35 3 36 1 intensity-based 71 72 1 1 36 3 37 1 intensity-based 73 74 1 1 37 3 38 1 intensity-based 75 76 1 1 38 3 39 1 intensity-based 77 78 1 1 39 3 40 1 intensity-based 79 80 1 1 40 3 41 1 intensity-based 81 82 1 1 41 3 42 1 intensity-based 83 84 1 1 42 3 43 1 intensity-based 85 86 1 1 43 3 44 1 intensity-based 87 88 1 1 44 3 45 1 intensity-based 89 90 1 1 45 3 46 1 intensity-based 91 92 1 1 46 3 47 1 intensity-based 93 94 1 1 47 3 48 1 intensity-based 95 96 1 1 48 3 49 1 intensity-based 97 98 1 1 49 3 50 1 intensity-based 99 100 1 1 50 3 # # loop_ _flr_fret_analysis_intensity.ordinal_id _flr_fret_analysis_intensity.analysis_id _flr_fret_analysis_intensity.calibration_parameters_id _flr_fret_analysis_intensity.donor_only_fraction _flr_fret_analysis_intensity.chi_square_reduced _flr_fret_analysis_intensity.method_name _flr_fret_analysis_intensity.details 1 1 1 . 1.480 PDA . 2 2 2 . 0.780 PDA . 3 3 3 . 1.480 PDA . 4 4 4 . 2.320 PDA . 5 5 5 . 1.360 PDA . 6 6 6 . 1.170 PDA . 7 7 7 . 1.140 PDA . 8 8 8 . 1.990 PDA . 9 9 9 . 2.400 PDA . 10 10 10 . 0.780 PDA . 11 11 11 . 0.840 PDA . 12 12 12 . 0.980 PDA . 13 13 13 . 0.670 PDA . 14 14 14 . 0.970 PDA . 15 15 15 . 1.380 PDA . 16 16 16 . 1.730 PDA . 17 17 17 . 1.320 PDA . 18 18 18 . 1.880 PDA . 19 19 12 . 1.050 PDA . 20 20 19 . 0.780 PDA . 21 21 20 . 3.050 PDA . 22 22 15 . 1.420 PDA . 23 23 9 . 1.220 PDA . 24 24 21 . 1.690 PDA . 25 25 22 . 1.500 PDA . 26 26 23 . 0.780 PDA . 27 27 24 . 0.900 PDA . 28 28 3 . 1.710 PDA . 29 29 25 . 1.740 PDA . 30 30 26 . 1.170 PDA . 31 31 27 . 0.990 PDA . 32 32 28 . 2.060 PDA . 33 33 29 . 2.110 PDA . 34 34 30 . 1.060 PDA . 35 35 31 . 0.830 PDA . 36 36 32 . 0.680 PDA . 37 37 33 . 1.290 PDA . 38 38 34 . 1.510 PDA . 39 39 14 . 1.890 PDA . 40 40 35 . 1.200 PDA . 41 41 36 . 1.030 PDA . 42 42 37 . 1.420 PDA . 43 43 38 . 1.250 PDA . 44 44 39 . 0.700 PDA . 45 45 40 . 1.750 PDA . 46 46 41 . 1.780 PDA . 47 47 42 . 1.020 PDA . 48 48 43 . 1.210 PDA . 49 49 44 . 2.110 PDA . 50 50 45 . 2.740 PDA . # # loop_ _flr_peak_assignment.id _flr_peak_assignment.method_name _flr_peak_assignment.details 1 Population . # # loop_ _flr_fret_distance_restraint.ordinal_id _flr_fret_distance_restraint.id _flr_fret_distance_restraint.group_id _flr_fret_distance_restraint.sample_probe_id_1 _flr_fret_distance_restraint.sample_probe_id_2 _flr_fret_distance_restraint.state_id _flr_fret_distance_restraint.analysis_id _flr_fret_distance_restraint.distance _flr_fret_distance_restraint.distance_error_plus _flr_fret_distance_restraint.distance_error_minus _flr_fret_distance_restraint.distance_type _flr_fret_distance_restraint.population_fraction _flr_fret_distance_restraint.peak_assignment_id 1 1 1 1 2 1 1 53.400 2.700 2.700 _E 0.789 1 2 2 1 3 4 1 2 64.100 3.400 3.400 _E 0.735 1 3 3 1 5 6 1 3 48.700 2.500 2.500 _E 0.751 1 4 4 1 7 8 1 4 49.800 2.500 2.500 _E 0.626 1 5 5 1 9 10 1 5 44.400 2.200 2.200 _E 0.674 1 6 6 1 11 12 1 6 56.600 2.900 2.900 _E 0.782 1 7 7 1 13 14 1 7 58.700 3.000 3.000 _E 0.738 1 8 8 1 15 16 1 8 59.300 3.200 3.200 _E 0.729 1 9 9 1 17 18 1 9 48.300 2.500 2.500 _E 0.663 1 10 10 1 19 20 1 10 51.600 3.100 3.100 _E 0.618 1 11 11 1 21 22 1 11 45.500 2.300 2.300 _E 0.685 1 12 12 1 23 24 1 12 62.500 3.300 3.300 _E 0.599 1 13 13 1 25 26 1 13 58.100 2.900 2.900 _E 0.768 1 14 14 1 27 28 1 14 56.400 2.800 2.800 _E 0.856 1 15 15 1 29 30 1 15 50.700 2.600 2.600 _E 0.784 1 16 16 1 31 32 1 16 51.700 2.600 2.600 _E 0.823 1 17 17 1 33 34 1 17 52.800 2.700 2.700 _E 0.816 1 18 18 1 35 36 1 18 44.200 2.200 2.200 _E 0.729 1 19 19 1 37 38 1 19 58.800 3.000 3.000 _E 0.794 1 20 20 1 39 40 1 20 57.700 2.900 2.900 _E 0.839 1 21 21 1 41 42 1 21 44.200 2.200 2.200 _E 0.783 1 22 22 1 43 44 1 22 46.100 2.400 2.400 _E 0.825 1 23 23 1 45 46 1 23 41.700 2.100 2.100 _E 0.570 1 24 24 1 47 48 1 24 41.900 2.100 2.100 _E 0.580 1 25 25 1 49 50 1 25 39.200 2.000 2.000 _E 0.625 1 26 26 1 51 52 1 26 51.600 2.600 2.600 _E 0.780 1 27 27 1 53 54 1 27 52.100 2.600 2.600 _E 0.694 1 28 28 1 55 56 1 28 45.100 2.400 2.400 _E 0.548 1 29 29 1 57 58 1 29 45.800 2.800 2.800 _E 0.580 1 30 30 1 59 60 1 30 53.800 2.700 2.700 _E 0.821 1 31 31 1 61 62 1 31 63.000 3.400 3.400 _E 0.744 1 32 32 1 63 64 1 32 67.400 3.600 3.600 _E 0.648 1 33 33 1 65 66 1 33 46.800 2.400 2.400 _E 0.822 1 34 34 1 67 68 1 34 44.300 2.300 2.300 _E 0.808 1 35 35 1 69 70 1 35 46.900 2.400 2.400 _E 0.770 1 36 36 1 71 72 1 36 51.000 2.600 2.600 _E 0.793 1 37 37 1 73 74 1 37 56.800 3.100 3.100 _E 0.824 1 38 38 1 75 76 1 38 61.400 3.300 3.300 _E 0.816 1 39 39 1 77 78 1 39 55.100 2.800 2.800 _E 0.857 1 40 40 1 79 80 1 40 52.200 2.700 2.700 _E 0.838 1 41 41 1 81 82 1 41 42.100 2.100 2.100 _E 0.695 1 42 42 1 83 84 1 42 49.500 2.500 2.500 _E 0.807 1 43 43 1 85 86 1 43 65.600 4.400 4.400 _E 0.849 1 44 44 1 87 88 1 44 78.000 4.600 4.600 _E 0.690 1 45 45 1 89 90 1 45 80.100 4.600 4.600 _E 0.765 1 46 46 1 91 92 1 46 39.800 2.000 2.000 _E 0.705 1 47 47 1 93 94 1 47 43.900 2.200 2.200 _E 0.880 1 48 48 1 95 96 1 48 39.300 2.000 2.000 _E 0.664 1 49 49 1 97 98 1 49 52.700 2.600 2.600 _E 0.679 1 50 50 1 99 100 1 50 41.200 2.100 2.100 _E 0.670 1 # # loop_ _flr_fret_model_quality.model_id _flr_fret_model_quality.chi_square_reduced _flr_fret_model_quality.dataset_group_id _flr_fret_model_quality.method _flr_fret_model_quality.details 1 1.930 1 . . 2 2.229 1 . . 3 2.284 1 . . 4 2.422 1 . . 5 2.512 1 . . 6 2.530 1 . . 7 2.749 1 . . 8 1.872 2 . . 9 1.898 2 . . 10 1.976 2 . . # # loop_ _flr_fret_model_distance.id _flr_fret_model_distance.restraint_id _flr_fret_model_distance.model_id _flr_fret_model_distance.distance _flr_fret_model_distance.distance_deviation 1 1 1 51.400 2.000 2 2 1 65.600 -1.500 3 3 1 44.400 4.300 4 4 1 46.400 3.400 5 5 1 41.000 3.400 6 6 1 52.200 4.400 7 7 1 52.700 6.000 8 8 1 60.200 -0.900 9 9 1 46.500 1.800 10 10 1 46.600 5.000 11 11 1 47.000 -1.500 12 12 1 60.100 2.400 13 13 1 66.000 -7.900 14 14 1 50.400 6.000 15 15 1 50.700 0 16 16 1 53.700 -2.000 17 17 1 52.500 0.300 18 18 1 44.800 -0.600 19 19 1 58.500 0.300 20 20 1 62.500 -4.800 21 21 1 38.700 5.500 22 22 1 43.500 2.600 23 23 1 47.300 -5.600 24 24 1 42.300 -0.400 25 25 1 35.300 3.900 26 26 1 47.100 4.500 27 27 1 50.300 1.800 28 28 1 42.200 2.900 29 29 1 48.300 -2.500 30 30 1 55.300 -1.500 31 31 1 63.100 -0.100 32 32 1 62.200 5.200 33 33 1 43.800 3.000 34 34 1 43.400 0.900 35 35 1 47.100 -0.200 36 36 1 53.200 -2.200 37 37 1 61.100 -4.300 38 38 1 60.300 1.100 39 39 1 52.100 3.000 40 40 1 54.900 -2.700 41 41 1 40.900 1.200 42 42 1 51.800 -2.300 43 43 1 68.100 -2.500 44 44 1 76.700 1.300 45 45 1 79.000 1.100 46 46 1 36.400 3.400 47 47 1 48.500 -4.600 48 48 1 37.100 2.200 49 49 1 54.800 -2.100 50 50 1 38.400 2.800 51 1 2 48.800 4.600 52 2 2 66.100 -2.000 53 3 2 52.500 -3.800 54 4 2 51.100 -1.300 55 5 2 41.300 3.100 56 6 2 52.000 4.600 57 7 2 50.600 8.100 58 8 2 61.100 -1.800 59 9 2 45.800 2.500 60 10 2 45.700 5.900 61 11 2 47.700 -2.200 62 12 2 60.600 1.900 63 13 2 66.700 -8.600 64 14 2 49.400 7.000 65 15 2 51.800 -1.100 66 16 2 47.400 4.300 67 17 2 48.500 4.300 68 18 2 44.200 0 69 19 2 58.500 0.300 70 20 2 62.800 -5.100 71 21 2 37.200 7.000 72 22 2 43.900 2.200 73 23 2 41.800 -0.100 74 24 2 41.900 0 75 25 2 34.500 4.700 76 26 2 46.800 4.800 77 27 2 50.200 1.900 78 28 2 44.300 0.800 79 29 2 46.900 -1.100 80 30 2 55.700 -1.900 81 31 2 64.000 -1.000 82 32 2 62.800 4.600 83 33 2 44.200 2.600 84 34 2 43.800 0.500 85 35 2 47.800 -0.900 86 36 2 52.400 -1.400 87 37 2 61.000 -4.200 88 38 2 59.700 1.700 89 39 2 51.000 4.100 90 40 2 55.000 -2.800 91 41 2 40.700 1.400 92 42 2 52.000 -2.500 93 43 2 69.100 -3.500 94 44 2 77.800 0.200 95 45 2 79.200 0.900 96 46 2 35.600 4.200 97 47 2 48.000 -4.100 98 48 2 37.300 2.000 99 49 2 55.200 -2.500 100 50 2 38.800 2.400 101 1 3 51.400 2.000 102 2 3 65.300 -1.200 103 3 3 54.500 -5.800 104 4 3 53.700 -3.900 105 5 3 42.000 2.400 106 6 3 54.200 2.400 107 7 3 51.900 6.800 108 8 3 60.200 -0.900 109 9 3 46.500 1.800 110 10 3 46.900 4.700 111 11 3 48.300 -2.800 112 12 3 62.000 0.500 113 13 3 67.700 -9.600 114 14 3 50.500 5.900 115 15 3 50.400 0.300 116 16 3 47.200 4.500 117 17 3 48.800 4.000 118 18 3 46.500 -2.300 119 19 3 61.100 -2.300 120 20 3 65.000 -7.300 121 21 3 38.400 5.800 122 22 3 43.200 2.900 123 23 3 42.800 -1.100 124 24 3 43.200 -1.300 125 25 3 35.800 3.400 126 26 3 48.400 3.200 127 27 3 51.500 0.600 128 28 3 44.200 0.900 129 29 3 46.500 -0.700 130 30 3 56.300 -2.500 131 31 3 64.200 -1.200 132 32 3 63.000 4.400 133 33 3 43.300 3.500 134 34 3 43.000 1.300 135 35 3 47.200 -0.300 136 36 3 53.000 -2.000 137 37 3 61.200 -4.400 138 38 3 60.100 1.300 139 39 3 51.600 3.500 140 40 3 55.200 -3.000 141 41 3 40.200 1.900 142 42 3 51.200 -1.700 143 43 3 69.900 -4.300 144 44 3 78.700 -0.700 145 45 3 80.300 -0.200 146 46 3 35.900 3.900 147 47 3 48.200 -4.300 148 48 3 35.600 3.700 149 49 3 53.200 -0.500 150 50 3 37.100 4.100 151 1 4 51.300 2.100 152 2 4 65.400 -1.300 153 3 4 53.600 -4.900 154 4 4 52.700 -2.900 155 5 4 41.300 3.100 156 6 4 52.500 4.100 157 7 4 51.900 6.800 158 8 4 58.800 0.500 159 9 4 45.900 2.400 160 10 4 46.300 5.300 161 11 4 46.800 -1.300 162 12 4 60.200 2.300 163 13 4 66.000 -7.900 164 14 4 50.200 6.200 165 15 4 49.600 1.100 166 16 4 47.300 4.400 167 17 4 48.700 4.100 168 18 4 43.600 0.600 169 19 4 57.900 0.900 170 20 4 61.800 -4.100 171 21 4 38.100 6.100 172 22 4 43.900 2.200 173 23 4 42.600 -0.900 174 24 4 42.900 -1.000 175 25 4 33.100 6.100 176 26 4 45.600 6.000 177 27 4 48.900 3.200 178 28 4 41.600 3.500 179 29 4 44.500 1.300 180 30 4 56.600 -2.800 181 31 4 66.500 -3.500 182 32 4 66.100 1.300 183 33 4 44.800 2.000 184 34 4 43.700 0.600 185 35 4 45.700 1.200 186 36 4 53.300 -2.300 187 37 4 62.800 -6.000 188 38 4 62.000 -0.600 189 39 4 51.500 3.600 190 40 4 55.600 -3.400 191 41 4 37.700 4.400 192 42 4 52.100 -2.600 193 43 4 68.300 -2.700 194 44 4 78.100 -0.100 195 45 4 79.800 0.300 196 46 4 35.900 3.900 197 47 4 48.500 -4.600 198 48 4 36.800 2.500 199 49 4 55.400 -2.700 200 50 4 37.400 3.800 201 1 5 49.200 4.200 202 2 5 65.900 -1.800 203 3 5 55.100 -6.400 204 4 5 53.100 -3.300 205 5 5 43.000 1.400 206 6 5 54.100 2.500 207 7 5 51.100 7.600 208 8 5 60.500 -1.200 209 9 5 47.300 1.000 210 10 5 46.400 5.200 211 11 5 48.600 -3.100 212 12 5 62.100 0.400 213 13 5 67.800 -9.700 214 14 5 49.100 7.300 215 15 5 50.600 0.100 216 16 5 47.700 4.000 217 17 5 48.200 4.600 218 18 5 43.400 0.800 219 19 5 57.700 1.100 220 20 5 61.800 -4.100 221 21 5 36.800 7.400 222 22 5 43.800 2.300 223 23 5 42.800 -1.100 224 24 5 42.500 -0.600 225 25 5 33.800 5.400 226 26 5 46.100 5.500 227 27 5 49.500 2.600 228 28 5 43.000 2.100 229 29 5 45.900 -0.100 230 30 5 54.700 -0.900 231 31 5 63.300 -0.300 232 32 5 61.500 5.900 233 33 5 45.200 1.600 234 34 5 43.600 0.700 235 35 5 46.700 0.200 236 36 5 50.700 0.300 237 37 5 59.000 -2.200 238 38 5 57.300 4.100 239 39 5 53.400 1.700 240 40 5 56.100 -3.900 241 41 5 39.500 2.600 242 42 5 54.400 -4.900 243 43 5 69.900 -4.300 244 44 5 79.000 -1.000 245 45 5 79.000 1.100 246 46 5 36.400 3.400 247 47 5 47.000 -3.100 248 48 5 38.100 1.200 249 49 5 57.000 -4.300 250 50 5 38.700 2.500 251 1 6 52.200 1.200 252 2 6 64.300 -0.200 253 3 6 54.400 -5.700 254 4 6 53.200 -3.400 255 5 6 38.500 5.900 256 6 6 50.700 5.900 257 7 6 51.700 7.000 258 8 6 60.000 -0.700 259 9 6 46.000 2.300 260 10 6 45.700 5.900 261 11 6 43.800 1.700 262 12 6 57.300 5.200 263 13 6 62.600 -4.500 264 14 6 50.900 5.500 265 15 6 50.900 -0.200 266 16 6 46.800 4.900 267 17 6 48.000 4.800 268 18 6 45.900 -1.700 269 19 6 60.500 -1.700 270 20 6 64.200 -6.500 271 21 6 39.400 4.800 272 22 6 42.500 3.600 273 23 6 43.100 -1.400 274 24 6 43.500 -1.600 275 25 6 36.100 3.100 276 26 6 48.700 2.900 277 27 6 51.300 0.800 278 28 6 44.300 0.800 279 29 6 46.800 -1.000 280 30 6 55.800 -2.000 281 31 6 63.200 -0.200 282 32 6 63.100 4.300 283 33 6 40.500 6.300 284 34 6 42.300 2.000 285 35 6 47.400 -0.500 286 36 6 53.300 -2.300 287 37 6 61.300 -4.500 288 38 6 61.100 0.300 289 39 6 48.300 6.800 290 40 6 55.800 -3.600 291 41 6 41.300 0.800 292 42 6 50.800 -1.300 293 43 6 65.900 -0.300 294 44 6 73.700 4.300 295 45 6 77.200 2.900 296 46 6 32.700 7.100 297 47 6 49.000 -5.100 298 48 6 36.900 2.400 299 49 6 54.100 -1.400 300 50 6 38.700 2.500 301 1 7 52.200 1.200 302 2 7 66.000 -1.900 303 3 7 52.500 -3.800 304 4 7 51.600 -1.800 305 5 7 41.500 2.900 306 6 7 52.300 4.300 307 7 7 50.500 8.200 308 8 7 60.200 -0.900 309 9 7 43.600 4.700 310 10 7 43.700 7.900 311 11 7 46.400 -0.900 312 12 7 58.200 4.300 313 13 7 64.700 -6.600 314 14 7 50.200 6.200 315 15 7 51.600 -0.900 316 16 7 45.200 6.500 317 17 7 46.700 6.100 318 18 7 46.500 -2.300 319 19 7 60.500 -1.700 320 20 7 65.600 -7.900 321 21 7 39.400 4.800 322 22 7 44.300 1.800 323 23 7 42.800 -1.100 324 24 7 43.300 -1.400 325 25 7 35.400 3.800 326 26 7 48.200 3.400 327 27 7 51.900 0.200 328 28 7 43.900 1.200 329 29 7 46.200 -0.400 330 30 7 55.900 -2.100 331 31 7 64.500 -1.500 332 32 7 64.600 2.800 333 33 7 40.900 5.900 334 34 7 44.000 0.300 335 35 7 46.900 0 336 36 7 52.600 -1.600 337 37 7 61.400 -4.600 338 38 7 61.400 0 339 39 7 48.900 6.200 340 40 7 56.000 -3.800 341 41 7 40.800 1.300 342 42 7 54.100 -4.600 343 43 7 67.300 -1.700 344 44 7 74.900 3.100 345 45 7 78.000 2.100 346 46 7 33.900 5.900 347 47 7 49.800 -5.900 348 48 7 36.200 3.100 349 49 7 54.500 -1.800 350 50 7 37.500 3.700 351 1 8 53.046 0.354 352 2 8 61.903 2.197 353 3 8 51.987 -3.287 354 4 8 53.019 -3.219 355 5 8 41.024 3.376 356 6 8 52.916 3.684 357 7 8 55.628 3.072 358 8 8 55.757 3.543 359 9 8 47.507 0.793 360 10 8 50.512 1.088 361 11 8 46.640 -1.140 362 12 8 61.557 0.943 363 13 8 66.951 -8.851 364 14 8 50.048 6.352 365 15 8 45.114 5.586 366 16 8 49.462 2.238 367 17 8 52.773 0.027 368 18 8 41.583 2.617 369 19 8 56.331 2.469 370 20 8 58.514 -0.814 371 21 8 39.319 4.881 372 22 8 40.618 5.482 373 23 8 41.376 0.324 374 24 8 43.340 -1.440 375 25 8 33.644 5.556 376 26 8 47.845 3.755 377 27 8 47.757 4.343 378 28 8 44.779 0.321 379 29 8 46.545 -0.745 380 30 8 51.549 2.251 381 31 8 62.031 0.969 382 32 8 62.907 4.493 383 33 8 42.364 4.436 384 34 8 40.432 3.868 385 35 8 50.262 -3.362 386 36 8 47.201 3.799 387 37 8 58.281 -1.481 388 38 8 57.381 4.019 389 39 8 50.329 4.771 390 40 8 50.197 2.003 391 41 8 34.413 7.687 392 42 8 50.867 -1.367 393 43 8 63.919 1.681 394 44 8 77.183 0.817 395 45 8 80.606 -0.506 396 46 8 36.589 3.211 397 47 8 46.070 -2.170 398 48 8 35.846 3.454 399 49 8 52.868 -0.168 400 50 8 40.950 0.250 401 1 9 51.737 1.663 402 2 9 63.036 1.064 403 3 9 47.368 1.332 404 4 9 47.559 2.241 405 5 9 41.768 2.632 406 6 9 50.417 6.183 407 7 9 57.076 1.624 408 8 9 56.700 2.600 409 9 9 47.060 1.240 410 10 9 49.830 1.770 411 11 9 47.223 -1.723 412 12 9 59.141 3.359 413 13 9 65.719 -7.619 414 14 9 51.170 5.230 415 15 9 48.021 2.679 416 16 9 48.102 3.598 417 17 9 50.763 2.037 418 18 9 41.281 2.919 419 19 9 53.384 5.416 420 20 9 56.572 1.128 421 21 9 41.241 2.959 422 22 9 42.944 3.156 423 23 9 42.096 -0.396 424 24 9 43.622 -1.722 425 25 9 33.632 5.568 426 26 9 45.799 5.801 427 27 9 45.901 6.199 428 28 9 44.059 1.041 429 29 9 46.249 -0.449 430 30 9 50.739 3.061 431 31 9 61.054 1.946 432 32 9 63.869 3.531 433 33 9 44.771 2.029 434 34 9 42.807 1.493 435 35 9 49.695 -2.795 436 36 9 47.899 3.101 437 37 9 58.330 -1.530 438 38 9 59.536 1.864 439 39 9 51.948 3.152 440 40 9 51.059 1.141 441 41 9 32.421 9.679 442 42 9 47.753 1.747 443 43 9 63.221 2.379 444 44 9 76.888 1.112 445 45 9 81.323 -1.223 446 46 9 37.183 2.617 447 47 9 47.686 -3.786 448 48 9 34.530 4.770 449 49 9 49.873 2.827 450 50 9 38.642 2.558 451 1 10 54.963 -1.563 452 2 10 62.768 1.332 453 3 10 52.840 -4.140 454 4 10 53.210 -3.410 455 5 10 42.730 1.670 456 6 10 53.339 3.261 457 7 10 56.447 2.253 458 8 10 57.080 2.220 459 9 10 47.132 1.168 460 10 10 49.794 1.806 461 11 10 47.001 -1.501 462 12 10 60.396 2.104 463 13 10 66.275 -8.175 464 14 10 52.430 3.970 465 15 10 47.363 3.337 466 16 10 48.275 3.425 467 17 10 51.563 1.237 468 18 10 42.680 1.520 469 19 10 56.794 2.006 470 20 10 60.255 -2.555 471 21 10 42.047 2.153 472 22 10 41.104 4.996 473 23 10 44.029 -2.329 474 24 10 45.839 -3.939 475 25 10 34.057 5.143 476 26 10 47.166 4.434 477 27 10 46.819 5.281 478 28 10 43.240 1.860 479 29 10 45.668 0.132 480 30 10 50.312 3.488 481 31 10 61.157 1.843 482 32 10 62.586 4.814 483 33 10 43.159 3.641 484 34 10 40.849 3.451 485 35 10 50.105 -3.205 486 36 10 46.325 4.675 487 37 10 57.556 -0.756 488 38 10 57.021 4.379 489 39 10 50.092 5.008 490 40 10 54.219 -2.019 491 41 10 34.093 8.007 492 42 10 51.761 -2.261 493 43 10 63.533 2.067 494 44 10 76.344 1.656 495 45 10 79.665 0.435 496 46 10 36.266 3.534 497 47 10 47.540 -3.640 498 48 10 33.900 5.400 499 49 10 49.791 2.909 500 50 10 39.160 2.040 # # loop_ _flr_FPS_modeling.id _flr_FPS_modeling.ihm_modeling_protocol_ordinal_id _flr_FPS_modeling.restraint_group_id _flr_FPS_modeling.global_parameter_id _flr_FPS_modeling.probe_modeling_method _flr_FPS_modeling.details 1 1 1 1 AV3 'Rigid body docking' 2 2 1 2 AV3 Refinement 3 3 1 3 AV3 'Error estimation (Bootstrapping)' 4 1 1 4 AV3 'Rigid body docking' 5 2 1 5 AV3 Refinement 6 3 1 6 AV3 'Error estimation (Bootstrapping)' 7 1 1 1 MPP 'Rigid body docking' 8 2 1 2 MPP Refinement 9 3 1 3 MPP 'Error estimation (Bootstrapping)' 10 1 1 4 MPP 'Rigid body docking' 11 2 1 5 MPP Refinement 12 3 1 6 MPP 'Error estimation (Bootstrapping)' # # loop_ _flr_FPS_global_parameter.id _flr_FPS_global_parameter.forster_radius_value _flr_FPS_global_parameter.conversion_function_polynom_order _flr_FPS_global_parameter.repetition _flr_FPS_global_parameter.AV_grid_rel _flr_FPS_global_parameter.AV_min_grid_A _flr_FPS_global_parameter.AV_allowed_sphere _flr_FPS_global_parameter.AV_search_nodes _flr_FPS_global_parameter.AV_E_samples_k _flr_FPS_global_parameter.sim_viscosity_adjustment _flr_FPS_global_parameter.sim_dt_adjustment _flr_FPS_global_parameter.sim_max_iter_k _flr_FPS_global_parameter.sim_max_force _flr_FPS_global_parameter.sim_clash_tolerance_A _flr_FPS_global_parameter.sim_reciprocal_kT _flr_FPS_global_parameter.sim_clash_potential _flr_FPS_global_parameter.convergence_E _flr_FPS_global_parameter.convergence_K _flr_FPS_global_parameter.convergence_F _flr_FPS_global_parameter.convergence_T 1 52 3 1000 0.200 0.400 0.500 3 200 1.000 1.000 200 400 1.000 10 '"^2"' 100 0.001 0.001 0.002 2 52 3 1000 0.200 0.400 0.500 3 200 0.700 0.500 500 10000 0.500 10 '"^2"' 100 0.0005 0.0005 0.010 3 52 3 1000 0.200 0.400 0.500 3 200 0.700 1.000 100 10000 0.500 10 '"^2"' 100 0.001 0.001 0.020 4 52 3 1000 0.200 0.400 0.500 3 200 1.000 1.000 200 400 1.000 10 '"^2"' 100 0.001 0.001 0.002 5 52 3 1000 0.200 0.400 0.500 3 200 0.700 0.500 500 10000 0.500 10 '"^2"' 100 0.0005 0.0005 0.010 6 52 3 1000 0.200 0.400 0.500 3 200 0.700 1.000 100 10000 0.500 10 '"^2"' 100 0.001 0.001 0.020 # # loop_ _flr_FPS_AV_parameter.id _flr_FPS_AV_parameter.num_linker_atoms _flr_FPS_AV_parameter.linker_length _flr_FPS_AV_parameter.linker_width _flr_FPS_AV_parameter.probe_radius_1 _flr_FPS_AV_parameter.probe_radius_2 _flr_FPS_AV_parameter.probe_radius_3 1 17 20.000 4.500 5.000 4.500 1.500 2 18 22.000 4.500 11.000 3.000 1.500 3 15 20.500 4.500 11.000 3.000 1.500 # # loop_ _flr_FPS_AV_modeling.id _flr_FPS_AV_modeling.sample_probe_id _flr_FPS_AV_modeling.FPS_modeling_id _flr_FPS_AV_modeling.parameter_id 1 1 1 1 2 1 2 1 3 1 3 1 4 1 4 1 5 1 5 1 6 1 6 1 7 2 1 2 8 2 2 2 9 2 3 2 10 2 4 2 11 2 5 2 12 2 6 2 13 3 1 1 14 3 2 1 15 3 3 1 16 3 4 1 17 3 5 1 18 3 6 1 19 4 1 2 20 4 2 2 21 4 3 2 22 4 4 2 23 4 5 2 24 4 6 2 25 5 1 1 26 5 2 1 27 5 3 1 28 5 4 1 29 5 5 1 30 5 6 1 31 6 1 3 32 6 2 3 33 6 3 3 34 6 4 3 35 6 5 3 36 6 6 3 37 7 1 1 38 7 2 1 39 7 3 1 40 7 4 1 41 7 5 1 42 7 6 1 43 8 1 3 44 8 2 3 45 8 3 3 46 8 4 3 47 8 5 3 48 8 6 3 49 9 1 1 50 9 2 1 51 9 3 1 52 9 4 1 53 9 5 1 54 9 6 1 55 10 1 2 56 10 2 2 57 10 3 2 58 10 4 2 59 10 5 2 60 10 6 2 61 11 1 1 62 11 2 1 63 11 3 1 64 11 4 1 65 11 5 1 66 11 6 1 67 12 1 2 68 12 2 2 69 12 3 2 70 12 4 2 71 12 5 2 72 12 6 2 73 13 1 1 74 13 2 1 75 13 3 1 76 13 4 1 77 13 5 1 78 13 6 1 79 14 1 2 80 14 2 2 81 14 3 2 82 14 4 2 83 14 5 2 84 14 6 2 85 15 1 1 86 15 2 1 87 15 3 1 88 15 4 1 89 15 5 1 90 15 6 1 91 16 1 2 92 16 2 2 93 16 3 2 94 16 4 2 95 16 5 2 96 16 6 2 97 17 1 1 98 17 2 1 99 17 3 1 100 17 4 1 101 17 5 1 102 17 6 1 103 18 1 3 104 18 2 3 105 18 3 3 106 18 4 3 107 18 5 3 108 18 6 3 109 19 1 1 110 19 2 1 111 19 3 1 112 19 4 1 113 19 5 1 114 19 6 1 115 20 1 3 116 20 2 3 117 20 3 3 118 20 4 3 119 20 5 3 120 20 6 3 121 21 1 1 122 21 2 1 123 21 3 1 124 21 4 1 125 21 5 1 126 21 6 1 127 22 1 2 128 22 2 2 129 22 3 2 130 22 4 2 131 22 5 2 132 22 6 2 133 23 1 1 134 23 2 1 135 23 3 1 136 23 4 1 137 23 5 1 138 23 6 1 139 24 1 2 140 24 2 2 141 24 3 2 142 24 4 2 143 24 5 2 144 24 6 2 145 25 1 1 146 25 2 1 147 25 3 1 148 25 4 1 149 25 5 1 150 25 6 1 151 27 1 1 152 27 2 1 153 27 3 1 154 27 4 1 155 27 5 1 156 27 6 1 157 28 1 2 158 28 2 2 159 28 3 2 160 28 4 2 161 28 5 2 162 28 6 2 163 29 1 1 164 29 2 1 165 29 3 1 166 29 4 1 167 29 5 1 168 29 6 1 169 30 1 2 170 30 2 2 171 30 3 2 172 30 4 2 173 30 5 2 174 30 6 2 175 31 1 1 176 31 2 1 177 31 3 1 178 31 4 1 179 31 5 1 180 31 6 1 181 32 1 3 182 32 2 3 183 32 3 3 184 32 4 3 185 32 5 3 186 32 6 3 187 33 1 1 188 33 2 1 189 33 3 1 190 33 4 1 191 33 5 1 192 33 6 1 193 34 1 3 194 34 2 3 195 34 3 3 196 34 4 3 197 34 5 3 198 34 6 3 199 35 1 1 200 35 2 1 201 35 3 1 202 35 4 1 203 35 5 1 204 35 6 1 205 36 1 2 206 36 2 2 207 36 3 2 208 36 4 2 209 36 5 2 210 36 6 2 211 37 1 1 212 37 2 1 213 37 3 1 214 37 4 1 215 37 5 1 216 37 6 1 217 38 1 2 218 38 2 2 219 38 3 2 220 38 4 2 221 38 5 2 222 38 6 2 223 39 1 1 224 39 2 1 225 39 3 1 226 39 4 1 227 39 5 1 228 39 6 1 229 41 1 1 230 41 2 1 231 41 3 1 232 41 4 1 233 41 5 1 234 41 6 1 235 42 1 2 236 42 2 2 237 42 3 2 238 42 4 2 239 42 5 2 240 42 6 2 241 43 1 1 242 43 2 1 243 43 3 1 244 43 4 1 245 43 5 1 246 43 6 1 247 44 1 2 248 44 2 2 249 44 3 2 250 44 4 2 251 44 5 2 252 44 6 2 253 45 1 1 254 45 2 1 255 45 3 1 256 45 4 1 257 45 5 1 258 45 6 1 259 46 1 3 260 46 2 3 261 46 3 3 262 46 4 3 263 46 5 3 264 46 6 3 265 47 1 1 266 47 2 1 267 47 3 1 268 47 4 1 269 47 5 1 270 47 6 1 271 48 1 3 272 48 2 3 273 48 3 3 274 48 4 3 275 48 5 3 276 48 6 3 277 49 1 1 278 49 2 1 279 49 3 1 280 49 4 1 281 49 5 1 282 49 6 1 283 50 1 2 284 50 2 2 285 50 3 2 286 50 4 2 287 50 5 2 288 50 6 2 289 51 1 1 290 51 2 1 291 51 3 1 292 51 4 1 293 51 5 1 294 51 6 1 295 52 1 2 296 52 2 2 297 52 3 2 298 52 4 2 299 52 5 2 300 52 6 2 301 53 1 1 302 53 2 1 303 53 3 1 304 53 4 1 305 53 5 1 306 53 6 1 307 55 1 1 308 55 2 1 309 55 3 1 310 55 4 1 311 55 5 1 312 55 6 1 313 56 1 3 314 56 2 3 315 56 3 3 316 56 4 3 317 56 5 3 318 56 6 3 319 57 1 1 320 57 2 1 321 57 3 1 322 57 4 1 323 57 5 1 324 57 6 1 325 58 1 3 326 58 2 3 327 58 3 3 328 58 4 3 329 58 5 3 330 58 6 3 331 59 1 1 332 59 2 1 333 59 3 1 334 59 4 1 335 59 5 1 336 59 6 1 337 60 1 2 338 60 2 2 339 60 3 2 340 60 4 2 341 60 5 2 342 60 6 2 343 61 1 1 344 61 2 1 345 61 3 1 346 61 4 1 347 61 5 1 348 61 6 1 349 62 1 2 350 62 2 2 351 62 3 2 352 62 4 2 353 62 5 2 354 62 6 2 355 63 1 1 356 63 2 1 357 63 3 1 358 63 4 1 359 63 5 1 360 63 6 1 361 65 1 1 362 65 2 1 363 65 3 1 364 65 4 1 365 65 5 1 366 65 6 1 367 66 1 2 368 66 2 2 369 66 3 2 370 66 4 2 371 66 5 2 372 66 6 2 373 67 1 1 374 67 2 1 375 67 3 1 376 67 4 1 377 67 5 1 378 67 6 1 379 68 1 2 380 68 2 2 381 68 3 2 382 68 4 2 383 68 5 2 384 68 6 2 385 69 1 1 386 69 2 1 387 69 3 1 388 69 4 1 389 69 5 1 390 69 6 1 391 70 1 3 392 70 2 3 393 70 3 3 394 70 4 3 395 70 5 3 396 70 6 3 397 71 1 1 398 71 2 1 399 71 3 1 400 71 4 1 401 71 5 1 402 71 6 1 403 72 1 2 404 72 2 2 405 72 3 2 406 72 4 2 407 72 5 2 408 72 6 2 409 73 1 1 410 73 2 1 411 73 3 1 412 73 4 1 413 73 5 1 414 73 6 1 415 74 1 2 416 74 2 2 417 74 3 2 418 74 4 2 419 74 5 2 420 74 6 2 421 75 1 1 422 75 2 1 423 75 3 1 424 75 4 1 425 75 5 1 426 75 6 1 427 78 1 2 428 78 2 2 429 78 3 2 430 78 4 2 431 78 5 2 432 78 6 2 433 80 1 2 434 80 2 2 435 80 3 2 436 80 4 2 437 80 5 2 438 80 6 2 439 82 1 2 440 82 2 2 441 82 3 2 442 82 4 2 443 82 5 2 444 82 6 2 445 86 1 2 446 86 2 2 447 86 3 2 448 86 4 2 449 86 5 2 450 86 6 2 451 88 1 2 452 88 2 2 453 88 3 2 454 88 4 2 455 88 5 2 456 88 6 2 457 91 1 1 458 91 2 1 459 91 3 1 460 91 4 1 461 91 5 1 462 91 6 1 463 92 1 2 464 92 2 2 465 92 3 2 466 92 4 2 467 92 5 2 468 92 6 2 469 93 1 1 470 93 2 1 471 93 3 1 472 93 4 1 473 93 5 1 474 93 6 1 475 94 1 2 476 94 2 2 477 94 3 2 478 94 4 2 479 94 5 2 480 94 6 2 481 95 1 1 482 95 2 1 483 95 3 1 484 95 4 1 485 95 5 1 486 95 6 1 487 96 1 2 488 96 2 2 489 96 3 2 490 96 4 2 491 96 5 2 492 96 6 2 493 97 1 1 494 97 2 1 495 97 3 1 496 97 4 1 497 97 5 1 498 97 6 1 499 99 1 1 500 99 2 1 501 99 3 1 502 99 4 1 503 99 5 1 504 99 6 1 505 100 1 2 506 100 2 2 507 100 3 2 508 100 4 2 509 100 5 2 510 100 6 2 # # loop_ _flr_FPS_mean_probe_position.id _flr_FPS_mean_probe_position.sample_probe_id _flr_FPS_mean_probe_position.mpp_xcoord _flr_FPS_mean_probe_position.mpp_ycoord _flr_FPS_mean_probe_position.mpp_zcoord 1 26 1.195 -9.536 8.967 2 40 1.195 -9.536 8.967 3 54 1.195 -9.536 8.967 4 64 1.195 -9.536 8.967 5 76 1.195 -9.536 8.967 6 77 -4.886 -8.887 5.789 7 79 -4.886 -8.887 5.789 8 81 -4.886 -8.887 5.789 9 83 -4.886 -8.887 5.789 10 84 1.195 -9.536 8.967 11 85 -4.886 -8.887 5.789 12 87 -4.886 -8.887 5.789 13 89 -4.886 -8.887 5.789 14 90 1.195 -9.536 8.967 15 98 1.195 -9.536 8.967 # # loop_ _flr_FPS_MPP_atom_position.id _flr_FPS_MPP_atom_position.entity_id _flr_FPS_MPP_atom_position.seq_id _flr_FPS_MPP_atom_position.comp_id _flr_FPS_MPP_atom_position.atom_id _flr_FPS_MPP_atom_position.asym_id _flr_FPS_MPP_atom_position.xcoord _flr_FPS_MPP_atom_position.ycoord _flr_FPS_MPP_atom_position.zcoord _flr_FPS_MPP_atom_position.group_id 1 4 27 G P D -0.501 -8.696 13.110 1 2 4 27 G "C4'" D -4.380 -8.633 13.760 1 3 4 27 G N9 D -4.245 -5.716 15.470 1 4 4 28 U P D -5.120 -7.047 10.300 1 5 4 28 U "C4'" D -8.349 -4.898 10.950 1 6 4 28 U N1 D -6.660 -2.517 12.660 1 7 4 29 G P D -8.115 -3.164 7.490 1 8 4 29 G "C4'" D -9.672 0.388 8.140 1 9 4 29 G N9 D -6.964 1.480 9.850 1 10 3 28 G P C -5.120 -7.047 10.300 2 11 3 28 G "C4'" C -8.349 -4.898 10.950 2 12 3 28 G N9 C -6.660 -2.517 12.660 2 13 3 29 U P C -8.115 -3.164 7.490 2 14 3 29 U "C4'" C -9.672 0.388 8.140 2 15 3 29 U N1 C -6.964 1.480 9.850 2 16 3 30 C P C -8.538 1.722 4.680 2 17 3 30 C "C4'" C -7.929 5.552 5.330 2 18 3 30 C N1 C -5.061 5.008 7.040 2 19 2 32 G P B -0.501 -8.696 13.110 3 20 2 32 G "C4'" B -4.380 -8.633 13.760 3 21 2 32 G N9 B -4.245 -5.716 15.470 3 22 2 33 U P B -5.120 -7.047 10.300 3 23 2 33 U "C4'" B -8.349 -4.898 10.950 3 24 2 33 U N1 B -6.660 -2.517 12.660 3 25 2 34 G P B -8.115 -3.164 7.490 3 26 2 34 G "C4'" B -9.672 0.388 8.140 3 27 2 34 G N9 B -6.964 1.480 9.850 3 # # loop_ _flr_FPS_MPP_modeling.ordinal_id _flr_FPS_MPP_modeling.FPS_modeling_id _flr_FPS_MPP_modeling.mpp_id _flr_FPS_MPP_modeling.mpp_atom_position_group_id 1 7 1 1 2 8 1 1 3 9 1 1 4 10 1 1 5 11 1 1 6 12 1 1 7 7 2 1 8 8 2 1 9 9 2 1 10 10 2 1 11 11 2 1 12 12 2 1 13 7 3 1 14 8 3 1 15 9 3 1 16 10 3 1 17 11 3 1 18 12 3 1 19 7 4 1 20 8 4 1 21 9 4 1 22 10 4 1 23 11 4 1 24 12 4 1 25 7 5 1 26 8 5 1 27 9 5 1 28 10 5 1 29 11 5 1 30 12 5 1 31 7 6 2 32 8 6 2 33 9 6 2 34 10 6 2 35 11 6 2 36 12 6 2 37 7 7 2 38 8 7 2 39 9 7 2 40 10 7 2 41 11 7 2 42 12 7 2 43 7 8 2 44 8 8 2 45 9 8 2 46 10 8 2 47 11 8 2 48 12 8 2 49 7 9 2 50 8 9 2 51 9 9 2 52 10 9 2 53 11 9 2 54 12 9 2 55 7 10 3 56 8 10 3 57 9 10 3 58 10 10 3 59 11 10 3 60 12 10 3 61 7 11 2 62 8 11 2 63 9 11 2 64 10 11 2 65 11 11 2 66 12 11 2 67 7 12 2 68 8 12 2 69 9 12 2 70 10 12 2 71 11 12 2 72 12 12 2 73 7 13 2 74 8 13 2 75 9 13 2 76 10 13 2 77 11 13 2 78 12 13 2 79 7 14 1 80 8 14 1 81 9 14 1 82 10 14 1 83 11 14 1 84 12 14 1 85 7 15 3 86 8 15 3 87 9 15 3 88 10 15 3 89 11 15 3 90 12 15 3 #