HEADER TRANSPORT PROTEIN 27-MAY-22 8A0H TITLE CRYSTAL STRUCTURE OF THE E25A MUTANT OF THE ORANGE CAROTENOID PROTEIN TITLE 2 X FROM GLOEOBACTER KILAUEENSIS JS1 COMPLEXED WITH ECHINENONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OCP N-TERMINAL DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLOEOBACTER KILAUEENSIS JS1; SOURCE 3 ORGANISM_TAXID: 1183438; SOURCE 4 GENE: GKIL_2275; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAROTENOID-BINDING PROTEIN, CAROTENOID TRANSPORT, CBP, GLOEOBACTER KEYWDS 2 KILAUEENSIS, TRANSPORT PROTEIN, NUCLEAR TRANSPORT FACTOR 2 EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,Y.B.SLONIMSKIY,A.O.ZUPNIK,L.A.VARFOLOMEEVA,E.G.MAKSIMOV, AUTHOR 2 N.N.SLUCHANKO REVDAT 3 01-MAY-24 8A0H 1 REMARK REVDAT 2 09-AUG-23 8A0H 1 JRNL REVDAT 1 01-FEB-23 8A0H 0 JRNL AUTH Y.B.SLONIMSKIY,A.O.ZUPNIK,L.A.VARFOLOMEEVA,K.M.BOYKO, JRNL AUTH 2 E.G.MAKSIMOV,N.N.SLUCHANKO JRNL TITL A PRIMORDIAL ORANGE CAROTENOID PROTEIN: STRUCTURE, JRNL TITL 2 PHOTOSWITCHING ACTIVITY AND EVOLUTIONARY ASPECTS. JRNL REF INT.J.BIOL.MACROMOL. V. 222 167 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 36165868 JRNL DOI 10.1016/J.IJBIOMAC.2022.09.131 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0350 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 33412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.022 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2625 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2403 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3582 ; 2.084 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5584 ; 0.771 ; 1.545 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.610 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;12.323 ; 7.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;14.981 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3062 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8A0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 72.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M MES REMARK 280 MONOHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER REMARK 280 5000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.86750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.53750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.68300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.53750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.86750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.68300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 48 CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CD OE1 OE2 REMARK 470 LYS A 71 CE NZ REMARK 470 GLN A 72 CB CG CD OE1 NE2 REMARK 470 LYS A 73 CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS A 142 CD CE NZ REMARK 470 LYS A 173 CE NZ REMARK 470 LYS A 230 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 245 CD GLU A 245 OE1 0.076 REMARK 500 GLU A 259 CD GLU A 259 OE1 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 235 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 243 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 123 37.64 -83.48 REMARK 500 TYR A 321 60.94 69.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 19 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 903 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 904 DISTANCE = 6.74 ANGSTROMS DBREF 8A0H A 1 322 UNP U5QHX0 U5QHX0_9CYAN 1 322 SEQADV 8A0H GLY A -2 UNP U5QHX0 EXPRESSION TAG SEQADV 8A0H PRO A -1 UNP U5QHX0 EXPRESSION TAG SEQADV 8A0H HIS A 0 UNP U5QHX0 EXPRESSION TAG SEQADV 8A0H ALA A 25 UNP U5QHX0 GLU 25 ENGINEERED MUTATION SEQRES 1 A 325 GLY PRO HIS MET PRO PHE THR LEU ALA SER ALA GLN ALA SEQRES 2 A 325 ILE PHE ALA GLY VAL ALA PRO SER ARG ILE PRO ALA ILE SEQRES 3 A 325 LEU ALA GLU PHE ASN ARG LEU SER ILE GLU ASP ARG LEU SEQRES 4 A 325 GLY LEU LEU TRP PHE ALA TYR THR GLU THR GLY ARG SER SEQRES 5 A 325 ILE THR ARG ALA ALA LEU GLY ALA ALA SER MET SER LEU SEQRES 6 A 325 VAL GLU ASN LEU LEU ASN GLU ILE LYS GLN LYS SER ARG SEQRES 7 A 325 ALA GLU GLN THR GLN VAL MET ILE ASP ILE ALA SER ARG SEQRES 8 A 325 ALA ASP THR PRO ILE SER ARG SER TYR GLY TYR PHE SER SEQRES 9 A 325 ALA ASN THR LYS LEU GLY PHE TRP TYR GLN LEU ALA GLU SEQRES 10 A 325 TRP MET ALA GLN GLY LEU VAL ALA PRO ALA PRO LYS ASP SEQRES 11 A 325 TYR GLN LEU SER SER ALA ALA ASN ASP LEU PHE ASN THR SEQRES 12 A 325 ILE LYS LYS LEU ASP GLY GLY GLN GLN ILE GLN VAL LEU SEQRES 13 A 325 ARG ASP ILE VAL VAL ASN MET GLY PHE ASP ALA SER VAL SEQRES 14 A 325 ALA PRO ALA PRO ALA PRO LYS ALA GLU GLU PHE GLN PHE SEQRES 15 A 325 GLU ARG THR GLU PRO VAL VAL SER GLY LEU LYS VAL ASP SEQRES 16 A 325 GLY ILE ASN ASP PRO THR PRO LEU ALA TYR PHE GLU ALA SEQRES 17 A 325 MET ASN ARG ASP ASP PHE GLU THR ALA VAL ASN LEU PHE SEQRES 18 A 325 ALA GLU ASP GLY ALA LEU GLN PRO PRO PHE GLN LYS PRO SEQRES 19 A 325 ILE VAL GLY ARG GLU ALA ILE LEU LYS TYR MET ARG GLU SEQRES 20 A 325 GLU ALA GLN GLY LEU ASN MET ARG PRO ALA GLN GLY ILE SEQRES 21 A 325 ALA GLU VAL LEU PRO ASP GLY SER LYS GLN LEU ARG VAL SEQRES 22 A 325 THR GLY LYS VAL GLN THR PRO TRP PHE GLY VAL ASN VAL SEQRES 23 A 325 ALA MET ASN LEU ALA TRP ARG PHE ALA LEU ASN PRO ASP SEQRES 24 A 325 GLY LYS ILE PHE PHE VAL ALA ILE ASP MET LEU GLY SER SEQRES 25 A 325 PRO GLU GLU LEU LEU ASN LEU ARG PRO PRO SER TYR ARG HET ECH A 401 41 HET SO4 A 402 5 HET SO4 A 403 5 HETNAM ECH BETA,BETA-CAROTEN-4-ONE HETNAM SO4 SULFATE ION HETSYN ECH ECHINENONE FORMUL 2 ECH C40 H54 O FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *404(H2 O) HELIX 1 AA1 THR A 4 ALA A 10 1 7 HELIX 2 AA2 ILE A 11 GLY A 14 5 4 HELIX 3 AA3 ARG A 19 LEU A 30 1 12 HELIX 4 AA4 SER A 31 GLY A 47 1 17 HELIX 5 AA5 ARG A 48 ILE A 50 5 3 HELIX 6 AA6 GLY A 56 GLN A 72 1 17 HELIX 7 AA7 SER A 74 SER A 87 1 14 HELIX 8 AA8 THR A 91 PHE A 100 1 10 HELIX 9 AA9 SER A 101 GLY A 119 1 19 HELIX 10 AB1 PRO A 123 TYR A 128 1 6 HELIX 11 AB2 SER A 131 LYS A 143 1 13 HELIX 12 AB3 ASP A 145 ASN A 159 1 15 HELIX 13 AB4 PRO A 172 GLU A 176 5 5 HELIX 14 AB5 ASP A 196 ARG A 208 1 13 HELIX 15 AB6 ASP A 210 LEU A 217 1 8 HELIX 16 AB7 GLY A 234 ALA A 246 1 13 HELIX 17 AB8 PHE A 279 VAL A 283 5 5 HELIX 18 AB9 SER A 309 LEU A 314 5 6 SHEET 1 AA1 6 ILE A 232 VAL A 233 0 SHEET 2 AA1 6 PHE A 218 GLN A 225 -1 N LEU A 224 O ILE A 232 SHEET 3 AA1 6 ILE A 299 MET A 306 1 O VAL A 302 N GLN A 225 SHEET 4 AA1 6 MET A 285 LEU A 293 -1 N ALA A 292 O PHE A 301 SHEET 5 AA1 6 LYS A 266 GLN A 275 -1 N LYS A 266 O LEU A 293 SHEET 6 AA1 6 ASN A 250 VAL A 260 -1 N GLN A 255 O THR A 271 CISPEP 1 MET A 1 PRO A 2 0 -4.26 CISPEP 2 PRO A 318 PRO A 319 0 3.56 CRYST1 37.735 61.366 145.075 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006893 0.00000