HEADER DNA BINDING PROTEIN 30-MAY-22 8A0X TITLE CRYSTAL STRUCTURE OF THE HIGB2-HIGA2 TETRAMER IN COMPLEX WITH OPERATOR TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITOXIN HIGA-2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TOXIN HIGB-2; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (30-MER); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA (31-MER); COMPND 15 CHAIN: F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 5 GENE: HIGA-2, VC_A0469; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 10 ORGANISM_TAXID: 666; SOURCE 11 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 12 GENE: HIGB-2, VC_A0468; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 18 ORGANISM_TAXID: 666; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 22 ORGANISM_TAXID: 666 KEYWDS ANTITOXIN, HIGA2, REPRESSOR, TOXIN-ANTITOXIN MODULE, HIGB2, VIBRIO KEYWDS 2 CHOLERAE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HADZI,R.LORIS REVDAT 2 07-FEB-24 8A0X 1 REMARK REVDAT 1 03-MAY-23 8A0X 0 JRNL AUTH S.HADZI,R.LORIS JRNL TITL FUZZY DNA RECOGNITION BY A PROKARYOTIC TRANSCRIPTION FACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3420 - 5.2303 0.98 3058 161 0.2019 0.2294 REMARK 3 2 5.2303 - 4.1522 1.00 2947 155 0.2268 0.2529 REMARK 3 3 4.1522 - 3.6275 1.00 2913 153 0.2683 0.2992 REMARK 3 4 3.6275 - 3.2960 0.99 2857 151 0.3476 0.3835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4794 REMARK 3 ANGLE : 1.009 6740 REMARK 3 CHIRALITY : 0.051 751 REMARK 3 PLANARITY : 0.006 658 REMARK 3 DIHEDRAL : 22.964 2635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 104) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8530 50.8006 -0.0621 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.4880 REMARK 3 T33: 0.4382 T12: 0.0039 REMARK 3 T13: -0.1030 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.7837 L22: 6.1864 REMARK 3 L33: 2.3750 L12: -1.2875 REMARK 3 L13: -0.4047 L23: 1.0531 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.1370 S13: -0.0873 REMARK 3 S21: 0.2578 S22: -0.0656 S23: -0.0773 REMARK 3 S31: -0.3056 S32: 0.3139 S33: 0.1006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 104) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7138 58.8071 -11.8397 REMARK 3 T TENSOR REMARK 3 T11: 0.4165 T22: 0.5326 REMARK 3 T33: 0.6070 T12: -0.0352 REMARK 3 T13: 0.0857 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 3.6803 L22: 1.7695 REMARK 3 L33: 3.9626 L12: 1.4057 REMARK 3 L13: 1.3599 L23: 0.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.2212 S12: 0.2664 S13: 0.0292 REMARK 3 S21: -0.0735 S22: 0.2384 S23: -0.0373 REMARK 3 S31: -0.5480 S32: 0.6485 S33: 0.0174 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4164 77.1395 -4.8430 REMARK 3 T TENSOR REMARK 3 T11: 1.2355 T22: 1.3084 REMARK 3 T33: 0.9833 T12: -0.6623 REMARK 3 T13: -0.1013 T23: 0.0991 REMARK 3 L TENSOR REMARK 3 L11: 1.1655 L22: 1.0105 REMARK 3 L33: 4.0751 L12: -0.5419 REMARK 3 L13: -0.7400 L23: -1.2625 REMARK 3 S TENSOR REMARK 3 S11: -0.2540 S12: -0.0764 S13: 0.4294 REMARK 3 S21: 0.5078 S22: 0.3171 S23: -0.4090 REMARK 3 S31: -0.6699 S32: 0.7037 S33: 0.0600 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 0 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4734 25.5546 -6.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.4625 T22: 0.5366 REMARK 3 T33: 0.6978 T12: 0.1733 REMARK 3 T13: -0.0337 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 6.7126 L22: 7.4040 REMARK 3 L33: 8.0279 L12: -0.4220 REMARK 3 L13: -0.6629 L23: -0.6919 REMARK 3 S TENSOR REMARK 3 S11: 0.2928 S12: 0.7982 S13: 0.1481 REMARK 3 S21: -0.4117 S22: -0.4339 S23: 0.4286 REMARK 3 S31: 0.4893 S32: -0.0723 S33: 0.1504 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 3 THROUGH 33) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5338 61.8374 -5.7257 REMARK 3 T TENSOR REMARK 3 T11: 0.6189 T22: 0.6509 REMARK 3 T33: 0.5205 T12: 0.0774 REMARK 3 T13: 0.0979 T23: 0.1068 REMARK 3 L TENSOR REMARK 3 L11: 3.0888 L22: 2.1820 REMARK 3 L33: 5.6841 L12: 0.1838 REMARK 3 L13: 1.8314 L23: 3.4520 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.3704 S13: -0.0632 REMARK 3 S21: 0.0108 S22: -0.3124 S23: 0.1949 REMARK 3 S31: -0.1638 S32: -0.7968 S33: 0.2334 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 4 THROUGH 34) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5305 58.0652 -7.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.7206 T22: 0.7035 REMARK 3 T33: 0.6516 T12: 0.1107 REMARK 3 T13: 0.0797 T23: 0.1408 REMARK 3 L TENSOR REMARK 3 L11: 4.0879 L22: 2.0735 REMARK 3 L33: 4.6212 L12: 1.1838 REMARK 3 L13: 2.1456 L23: 3.2008 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: -0.1231 S13: -0.3648 REMARK 3 S21: 0.0148 S22: -0.1753 S23: -0.1017 REMARK 3 S31: -0.1475 S32: -0.6645 S33: 0.1642 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : (CHAIN D AND (RESID 2 THROUGH 38 OR REMARK 3 (RESID 39 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 40 REMARK 3 THROUGH 50 OR (RESID 51 THROUGH 55 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 56 THROUGH 70 OR REMARK 3 (RESID 71 THROUGH 73 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 74 THROUGH 84 OR (RESID 85 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 86 THROUGH 105 OR REMARK 3 (RESID 106 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 107 OR REMARK 3 (RESID 108 THROUGH 109 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))) REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 942 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 8 OR (RESID REMARK 3 9 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 10 THROUGH REMARK 3 17 OR (RESID 18 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 19 THROUGH 23 OR (RESID 24 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 25 THROUGH 104)) REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 936 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12408 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.342 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JAA REMARK 200 REMARK 200 REMARK: RECTANGULAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM IODIDE, 0.1 M MES PH REMARK 280 6.5, 25% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.81000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.26250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.81000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.78750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.81000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.81000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.26250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.81000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.81000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.78750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 110 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 SER D 110 REMARK 465 DC E 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 PHE B 7 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 LEU B 25 CG CD1 CD2 REMARK 470 LYS C 2 CG CD CE NZ REMARK 470 ASP C 39 CG OD1 OD2 REMARK 470 GLN C 42 CG CD OE1 NE2 REMARK 470 THR C 44 OG1 CG2 REMARK 470 ARG C 51 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 52 CG1 CG2 REMARK 470 SER C 54 OG REMARK 470 LYS C 55 CG CD CE NZ REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 LYS C 59 CG CD CE NZ REMARK 470 ARG C 64 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 71 CG OD1 OD2 REMARK 470 GLU C 72 CG CD OE1 OE2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 84 CG CD CE NZ REMARK 470 ASN C 85 CG OD1 ND2 REMARK 470 LYS C 96 CG CD CE NZ REMARK 470 MET C 99 CG SD CE REMARK 470 ARG C 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 108 CG CD OE1 OE2 REMARK 470 GLN C 109 CG CD OE1 NE2 REMARK 470 HIS D 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET D 1 CB CG SD CE REMARK 470 GLU D 17 CG CD OE1 OE2 REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 SER D 54 OG REMARK 470 LYS D 55 CG CD CE NZ REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 LYS D 59 CG CD CE NZ REMARK 470 ARG D 64 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 72 CG CD OE1 OE2 REMARK 470 LYS D 84 CG CD CE NZ REMARK 470 LYS D 96 CG CD CE NZ REMARK 470 MET D 99 CG SD CE REMARK 470 DG F 1 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT E 10 O3' DT E 10 C3' -0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 20 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG F 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 55 30.12 -85.58 REMARK 500 LYS D 2 139.88 174.71 REMARK 500 SER D 63 154.96 85.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 8A0X A 2 104 UNP Q9KMA5 HIGA2_VIBCH 2 104 DBREF 8A0X B 2 104 UNP Q9KMA5 HIGA2_VIBCH 2 104 DBREF 8A0X C 1 110 UNP Q9KMA6 HIGB2_VIBCH 1 110 DBREF 8A0X D 1 110 UNP Q9KMA6 HIGB2_VIBCH 1 110 DBREF 8A0X E 1 31 PDB 8A0X 8A0X 1 31 DBREF 8A0X F 1 31 PDB 8A0X 8A0X 1 31 SEQADV 8A0X GLY C -2 UNP Q9KMA6 EXPRESSION TAG SEQADV 8A0X SER C -1 UNP Q9KMA6 EXPRESSION TAG SEQADV 8A0X HIS C 0 UNP Q9KMA6 EXPRESSION TAG SEQADV 8A0X GLY D -2 UNP Q9KMA6 EXPRESSION TAG SEQADV 8A0X SER D -1 UNP Q9KMA6 EXPRESSION TAG SEQADV 8A0X HIS D 0 UNP Q9KMA6 EXPRESSION TAG SEQRES 1 A 103 SER ASN ARG ASP LEU PHE ALA GLU LEU SER SER ALA LEU SEQRES 2 A 103 VAL GLU ALA LYS GLN HIS SER GLU GLY LYS LEU THR LEU SEQRES 3 A 103 LYS THR HIS HIS VAL ASN ASP VAL GLY GLU LEU ASN ILE SEQRES 4 A 103 SER PRO ASP GLU ILE VAL SER ILE ARG GLU GLN PHE ASN SEQRES 5 A 103 MET SER ARG GLY VAL PHE ALA ARG LEU LEU HIS THR SER SEQRES 6 A 103 SER ARG THR LEU GLU ASN TRP GLU GLN GLY ARG SER VAL SEQRES 7 A 103 PRO ASN GLY GLN ALA VAL THR LEU LEU LYS LEU VAL GLN SEQRES 8 A 103 ARG HIS PRO GLU THR LEU SER HIS ILE ALA GLU LEU SEQRES 1 B 103 SER ASN ARG ASP LEU PHE ALA GLU LEU SER SER ALA LEU SEQRES 2 B 103 VAL GLU ALA LYS GLN HIS SER GLU GLY LYS LEU THR LEU SEQRES 3 B 103 LYS THR HIS HIS VAL ASN ASP VAL GLY GLU LEU ASN ILE SEQRES 4 B 103 SER PRO ASP GLU ILE VAL SER ILE ARG GLU GLN PHE ASN SEQRES 5 B 103 MET SER ARG GLY VAL PHE ALA ARG LEU LEU HIS THR SER SEQRES 6 B 103 SER ARG THR LEU GLU ASN TRP GLU GLN GLY ARG SER VAL SEQRES 7 B 103 PRO ASN GLY GLN ALA VAL THR LEU LEU LYS LEU VAL GLN SEQRES 8 B 103 ARG HIS PRO GLU THR LEU SER HIS ILE ALA GLU LEU SEQRES 1 C 113 GLY SER HIS MET LYS SER VAL PHE VAL GLU SER THR ILE SEQRES 2 C 113 PHE GLU LYS TYR ARG ASP GLU TYR LEU SER ASP GLU GLU SEQRES 3 C 113 TYR ARG LEU PHE GLN ALA GLU LEU MET LEU ASN PRO LYS SEQRES 4 C 113 LEU GLY ASP VAL ILE GLN GLY THR GLY GLY LEU ARG LYS SEQRES 5 C 113 ILE ARG VAL ALA SER LYS GLY LYS GLY LYS ARG GLY GLY SEQRES 6 C 113 SER ARG ILE ILE TYR TYR PHE LEU ASP GLU LYS ARG ARG SEQRES 7 C 113 PHE TYR LEU LEU THR ILE TYR GLY LYS ASN GLU MET SER SEQRES 8 C 113 ASP LEU ASN ALA ASN GLN ARG LYS GLN LEU MET ALA PHE SEQRES 9 C 113 MET GLU ALA TRP ARG ASN GLU GLN SER SEQRES 1 D 113 GLY SER HIS MET LYS SER VAL PHE VAL GLU SER THR ILE SEQRES 2 D 113 PHE GLU LYS TYR ARG ASP GLU TYR LEU SER ASP GLU GLU SEQRES 3 D 113 TYR ARG LEU PHE GLN ALA GLU LEU MET LEU ASN PRO LYS SEQRES 4 D 113 LEU GLY ASP VAL ILE GLN GLY THR GLY GLY LEU ARG LYS SEQRES 5 D 113 ILE ARG VAL ALA SER LYS GLY LYS GLY LYS ARG GLY GLY SEQRES 6 D 113 SER ARG ILE ILE TYR TYR PHE LEU ASP GLU LYS ARG ARG SEQRES 7 D 113 PHE TYR LEU LEU THR ILE TYR GLY LYS ASN GLU MET SER SEQRES 8 D 113 ASP LEU ASN ALA ASN GLN ARG LYS GLN LEU MET ALA PHE SEQRES 9 D 113 MET GLU ALA TRP ARG ASN GLU GLN SER SEQRES 1 E 31 DC DG DC DC DA DT DC DT DG DT DA DC DG SEQRES 2 E 31 DC DT DT DG DG DT DG DC DG DT DA DC DA SEQRES 3 E 31 DC DT DT DC DC SEQRES 1 F 31 DG DG DG DA DA DG DT DG DT DA DC DG DC SEQRES 2 F 31 DA DC DC DA DA DG DC DG DT DA DC DA DG SEQRES 3 F 31 DA DT DG DG DC HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET MG B 201 1 HET MG D 201 1 HET MG E 101 1 HET MG F 101 1 HET MG F 102 1 HET MG F 103 1 HET MG F 104 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG 10(MG 2+) HELIX 1 AA1 ASP A 5 GLY A 23 1 19 HELIX 2 AA2 SER A 41 PHE A 52 1 12 HELIX 3 AA3 SER A 55 LEU A 63 1 9 HELIX 4 AA4 SER A 66 GLN A 75 1 10 HELIX 5 AA5 ASN A 81 HIS A 94 1 14 HELIX 6 AA6 GLU A 96 LEU A 104 1 9 HELIX 7 AA7 ASP B 5 GLY B 23 1 19 HELIX 8 AA8 SER B 41 PHE B 52 1 12 HELIX 9 AA9 SER B 55 LEU B 63 1 9 HELIX 10 AB1 SER B 66 GLN B 75 1 10 HELIX 11 AB2 ASN B 81 HIS B 94 1 14 HELIX 12 AB3 GLU B 96 LEU B 104 1 9 HELIX 13 AB4 SER C 8 LEU C 19 1 12 HELIX 14 AB5 SER C 20 ASN C 34 1 15 HELIX 15 AB6 ASP C 71 LYS C 73 5 3 HELIX 16 AB7 ASN C 91 GLN C 109 1 19 HELIX 17 AB8 SER D 8 LEU D 19 1 12 HELIX 18 AB9 SER D 20 ASN D 34 1 15 HELIX 19 AC1 ASP D 71 LYS D 73 5 3 HELIX 20 AC2 ASN D 91 GLN D 109 1 19 SHEET 1 AA1 6 THR A 29 VAL A 32 0 SHEET 2 AA1 6 SER D 3 GLU D 7 -1 O PHE D 5 N HIS A 30 SHEET 3 AA1 6 ARG D 75 TYR D 82 1 O PHE D 76 N VAL D 6 SHEET 4 AA1 6 ARG D 64 LEU D 70 -1 N LEU D 70 O ARG D 75 SHEET 5 AA1 6 ARG D 48 ARG D 51 -1 N ARG D 48 O TYR D 67 SHEET 6 AA1 6 ASP D 39 VAL D 40 -1 N ASP D 39 O LYS D 49 SHEET 1 AA2 6 THR B 29 VAL B 32 0 SHEET 2 AA2 6 SER C 3 GLU C 7 -1 O PHE C 5 N HIS B 30 SHEET 3 AA2 6 ARG C 75 GLY C 83 1 O PHE C 76 N VAL C 4 SHEET 4 AA2 6 SER C 63 LEU C 70 -1 N TYR C 68 O TYR C 77 SHEET 5 AA2 6 ARG C 48 ARG C 51 -1 N ARG C 48 O TYR C 67 SHEET 6 AA2 6 ASP C 39 VAL C 40 -1 N ASP C 39 O LYS C 49 LINK OD1 ASP A 43 MG MG A 202 1555 1555 2.78 LINK OD1 ASP B 43 MG MG B 201 1555 1555 2.66 LINK OP2 DG F 21 MG MG F 102 1555 1555 2.16 CRYST1 113.620 113.620 121.050 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008261 0.00000