HEADER HYDROLASE 02-JUN-22 8A1Z TITLE CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE SERB FROM MYCOBACTERIUM TITLE 2 AVIUM IN COMPLEX WITH 1-(2,4-DICHLOROPHENYL)-3-HYDROXYUREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: O-PHOSPHOSERINE PHOSPHOHYDROLASE; COMPND 5 EC: 3.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM 104; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 GENE: O972_03940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHOSERINE PHOSPHATASE, FRAGMENT, AVIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HAUFROID,J.WOUTERS REVDAT 3 31-JAN-24 8A1Z 1 REMARK REVDAT 2 30-NOV-22 8A1Z 1 JRNL REVDAT 1 23-NOV-22 8A1Z 0 JRNL AUTH M.HAUFROID,A.N.VOLKOV,J.WOUTERS JRNL TITL TARGETING THE PHOSPHOSERINE PHOSPHATASE MTSERB2 FOR JRNL TITL 2 TUBERCULOSIS DRUG DISCOVERY, AN HYBRID KNOWLEDGE BASED JRNL TITL 3 /FRAGMENT BASED APPROACH. JRNL REF EUR.J.MED.CHEM. V. 245 14935 2022 JRNL REFN ISSN 0223-5234 JRNL PMID 36403421 JRNL DOI 10.1016/J.EJMECH.2022.114935 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5900 - 4.5600 1.00 2837 149 0.1782 0.1899 REMARK 3 2 4.5600 - 3.6200 1.00 2732 144 0.1662 0.2140 REMARK 3 3 3.6200 - 3.1600 1.00 2702 142 0.2005 0.2589 REMARK 3 4 3.1600 - 2.8700 1.00 2689 142 0.2320 0.3192 REMARK 3 5 2.8700 - 2.6700 1.00 2686 141 0.2566 0.3247 REMARK 3 6 2.6700 - 2.5100 1.00 2673 141 0.2581 0.2926 REMARK 3 7 2.5100 - 2.3800 1.00 2675 140 0.2815 0.3427 REMARK 3 8 2.3800 - 2.2800 0.91 2401 127 0.3662 0.3903 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.359 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.676 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2937 REMARK 3 ANGLE : 0.951 4005 REMARK 3 CHIRALITY : 0.056 502 REMARK 3 PLANARITY : 0.012 524 REMARK 3 DIHEDRAL : 6.426 429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.7103 43.1773 27.6446 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.3957 REMARK 3 T33: 0.4791 T12: -0.1628 REMARK 3 T13: 0.0512 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.9379 L22: 2.2126 REMARK 3 L33: 3.2597 L12: 0.9114 REMARK 3 L13: 1.1693 L23: 1.4344 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.0019 S13: -0.1280 REMARK 3 S21: -0.0647 S22: -0.0028 S23: -0.0783 REMARK 3 S31: 0.1878 S32: 0.0226 S33: -0.0383 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 43.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.11560 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 1.71800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3P96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE PH 6.1, 16% PEG REMARK 280 6000, 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.30000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.30000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.70000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 730 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 401 REMARK 465 GLU A 402 REMARK 465 VAL A 403 REMARK 465 ARG A 404 REMARK 465 ARG A 405 REMARK 465 VAL A 406 REMARK 465 GLU A 407 REMARK 465 ILE A 408 REMARK 465 PRO A 409 REMARK 465 PRO A 410 REMARK 465 GLU A 411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 PRO A 284 CG CD REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLN A 337 CG CD OE1 NE2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 606 O HOH A 638 1.93 REMARK 500 OD1 ASP A 151 NH1 ARG A 155 2.10 REMARK 500 OE1 GLU A 196 N05 KVU A 502 2.16 REMARK 500 O HOH A 711 O HOH A 726 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 47 O HOH A 707 2665 1.91 REMARK 500 O HOH A 679 O HOH A 703 2665 2.14 REMARK 500 O HOH A 692 O HOH A 718 2665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 32 -167.49 -126.74 REMARK 500 HIS A 46 10.96 59.73 REMARK 500 ASP A 62 58.57 -106.83 REMARK 500 SER A 86 -78.02 -76.71 REMARK 500 ASP A 87 -45.89 76.81 REMARK 500 ARG A 178 -8.40 -57.21 REMARK 500 ARG A 182 -6.06 -148.60 REMARK 500 THR A 191 -79.36 -122.11 REMARK 500 ASP A 303 54.32 31.63 REMARK 500 ILE A 315 99.68 -68.72 REMARK 500 ASN A 361 62.51 34.85 REMARK 500 PRO A 377 46.20 -74.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 33 VAL A 34 -149.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 143 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 724 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 726 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 727 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 10.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD1 REMARK 620 2 ASP A 187 OD2 51.1 REMARK 620 3 ASP A 189 O 108.0 81.5 REMARK 620 4 ASP A 343 OD1 119.9 72.4 78.3 REMARK 620 5 KVU A 502 O01 167.4 140.7 81.2 69.6 REMARK 620 6 KVU A 502 O04 83.5 131.6 100.8 155.9 86.4 REMARK 620 7 HOH A 637 O 87.7 99.6 159.6 82.6 85.4 93.6 REMARK 620 N 1 2 3 4 5 6 DBREF 8A1Z A 1 411 UNP V7LE91 V7LE91_MYCAV 1 411 SEQADV 8A1Z GLY A -3 UNP V7LE91 EXPRESSION TAG SEQADV 8A1Z PRO A -2 UNP V7LE91 EXPRESSION TAG SEQADV 8A1Z GLY A -1 UNP V7LE91 EXPRESSION TAG SEQADV 8A1Z SER A 0 UNP V7LE91 EXPRESSION TAG SEQRES 1 A 415 GLY PRO GLY SER MET ASN SER PRO PRO LYS VAL SER VAL SEQRES 2 A 415 LEU ILE THR VAL THR GLY VAL ASP GLN PRO GLY VAL THR SEQRES 3 A 415 ALA THR LEU PHE GLU VAL LEU SER ARG HIS GLY VAL GLU SEQRES 4 A 415 LEU LEU ASN VAL GLU GLN VAL VAL ILE ARG HIS ARG LEU SEQRES 5 A 415 THR LEU GLY VAL LEU VAL CYS CYS PRO ALA ASP VAL ALA SEQRES 6 A 415 ASP GLY PRO ALA LEU ARG HIS ASP VAL GLU ALA ALA ILE SEQRES 7 A 415 ARG LYS VAL GLY LEU ASP VAL SER ILE GLU ARG SER ASP SEQRES 8 A 415 ASP VAL PRO ILE ILE ARG GLU PRO SER THR HIS THR ILE SEQRES 9 A 415 PHE VAL LEU GLY ARG PRO ILE THR ALA ALA ALA PHE GLY SEQRES 10 A 415 ALA VAL ALA ARG GLU VAL ALA ALA LEU GLY VAL ASN ILE SEQRES 11 A 415 ASP LEU ILE ARG GLY VAL SER ASP TYR PRO VAL ILE GLY SEQRES 12 A 415 LEU GLU LEU ARG VAL SER VAL PRO PRO GLY ALA ASP GLU SEQRES 13 A 415 ALA LEU ARG THR ALA LEU ASN ARG VAL SER SER GLU GLU SEQRES 14 A 415 HIS VAL ASP VAL ALA VAL GLU ASP TYR THR LEU GLU ARG SEQRES 15 A 415 ARG ALA LYS ARG LEU ILE VAL PHE ASP VAL ASP SER THR SEQRES 16 A 415 LEU VAL GLN GLY GLU VAL ILE GLU MET LEU ALA ALA LYS SEQRES 17 A 415 ALA GLY ALA GLU GLY GLN VAL ALA ALA ILE THR ASP ALA SEQRES 18 A 415 ALA MET ARG GLY GLU LEU ASP PHE ALA GLN SER LEU GLN SEQRES 19 A 415 GLN ARG VAL ALA THR LEU ALA GLY LEU PRO ALA THR VAL SEQRES 20 A 415 ILE ASP GLU VAL ALA GLY GLN LEU GLU LEU MET PRO GLY SEQRES 21 A 415 ALA ARG THR THR LEU ARG THR LEU ARG ARG LEU GLY TYR SEQRES 22 A 415 ALA CYS GLY VAL VAL SER GLY GLY PHE ARG ARG ILE ILE SEQRES 23 A 415 GLU PRO LEU ALA GLU GLU LEU MET LEU ASP TYR VAL ALA SEQRES 24 A 415 ALA ASN GLU LEU GLU ILE VAL ASP GLY THR LEU THR GLY SEQRES 25 A 415 ARG VAL VAL GLY PRO ILE ILE ASP ARG ALA GLY LYS ALA SEQRES 26 A 415 THR ALA LEU ARG GLU PHE ALA GLN ARG ALA GLY VAL PRO SEQRES 27 A 415 MET ALA GLN THR VAL ALA VAL GLY ASP GLY ALA ASN ASP SEQRES 28 A 415 ILE ASP MET LEU ALA ALA ALA GLY LEU GLY ILE ALA PHE SEQRES 29 A 415 ASN ALA LYS PRO ALA LEU ARG GLU VAL ALA ASP ALA SER SEQRES 30 A 415 LEU SER HIS PRO TYR LEU ASP THR VAL LEU PHE LEU LEU SEQRES 31 A 415 GLY VAL THR ARG GLY GLU ILE GLU ALA ALA ASP ALA ILE SEQRES 32 A 415 ASP GLY GLU VAL ARG ARG VAL GLU ILE PRO PRO GLU HET MG A 501 1 HET KVU A 502 19 HET CL A 503 1 HETNAM MG MAGNESIUM ION HETNAM KVU 1-(2,4-DICHLOROPHENYL)-3-OXIDANYL-UREA HETNAM CL CHLORIDE ION FORMUL 2 MG MG 2+ FORMUL 3 KVU C7 H6 CL2 N2 O2 FORMUL 4 CL CL 1- FORMUL 5 HOH *132(H2 O) HELIX 1 AA1 GLY A 20 ARG A 31 1 12 HELIX 2 AA2 PRO A 57 ASP A 62 1 6 HELIX 3 AA3 GLY A 63 VAL A 77 1 15 HELIX 4 AA4 THR A 108 LEU A 122 1 15 HELIX 5 AA5 ALA A 150 HIS A 166 1 17 HELIX 6 AA6 THR A 175 ALA A 180 1 6 HELIX 7 AA7 GLU A 196 ALA A 205 1 10 HELIX 8 AA8 ALA A 207 ARG A 220 1 14 HELIX 9 AA9 ASP A 224 THR A 235 1 12 HELIX 10 AB1 ALA A 241 LEU A 251 1 11 HELIX 11 AB2 GLY A 256 LEU A 267 1 12 HELIX 12 AB3 ARG A 279 LEU A 289 1 11 HELIX 13 AB4 ASP A 316 ALA A 331 1 16 HELIX 14 AB5 PRO A 334 ALA A 336 5 3 HELIX 15 AB6 GLY A 344 ASN A 346 5 3 HELIX 16 AB7 ASP A 347 ALA A 354 1 8 HELIX 17 AB8 LYS A 363 GLU A 368 1 6 HELIX 18 AB9 ASP A 380 LEU A 386 1 7 HELIX 19 AC1 THR A 389 ASP A 400 1 12 SHEET 1 AA1 4 GLU A 35 ILE A 44 0 SHEET 2 AA1 4 ARG A 47 CYS A 56 -1 O GLY A 51 N GLU A 40 SHEET 3 AA1 4 VAL A 7 VAL A 16 -1 N GLY A 15 O LEU A 48 SHEET 4 AA1 4 ASP A 80 GLU A 84 -1 O GLU A 84 N LEU A 10 SHEET 1 AA2 4 ASN A 125 SER A 133 0 SHEET 2 AA2 4 ILE A 138 SER A 145 -1 O ARG A 143 N ASP A 127 SHEET 3 AA2 4 HIS A 98 GLY A 104 -1 N ILE A 100 O LEU A 142 SHEET 4 AA2 4 ASP A 168 ASP A 173 -1 O GLU A 172 N THR A 99 SHEET 1 AA3 6 TYR A 293 ASN A 297 0 SHEET 2 AA3 6 ALA A 270 PHE A 278 1 N VAL A 273 O TYR A 293 SHEET 3 AA3 6 LEU A 183 PHE A 186 1 N ILE A 184 O ALA A 270 SHEET 4 AA3 6 THR A 338 GLY A 342 1 O VAL A 339 N LEU A 183 SHEET 5 AA3 6 LEU A 356 PHE A 360 1 O ILE A 358 N ALA A 340 SHEET 6 AA3 6 ALA A 372 LEU A 374 1 O LEU A 374 N ALA A 359 SHEET 1 AA4 2 LEU A 299 VAL A 302 0 SHEET 2 AA4 2 THR A 305 VAL A 310 -1 O THR A 305 N VAL A 302 LINK OD1 ASP A 187 MG MG A 501 1555 1555 2.79 LINK OD2 ASP A 187 MG MG A 501 1555 1555 1.98 LINK O ASP A 189 MG MG A 501 1555 1555 2.20 LINK OD1 ASP A 343 MG MG A 501 1555 1555 2.25 LINK MG MG A 501 O01 KVU A 502 1555 1555 1.98 LINK MG MG A 501 O04 KVU A 502 1555 1555 1.99 LINK MG MG A 501 O HOH A 637 1555 1555 2.07 CISPEP 1 ARG A 105 PRO A 106 0 11.46 CISPEP 2 TYR A 135 PRO A 136 0 -2.01 CRYST1 68.600 107.700 132.600 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007541 0.00000