HEADER MEMBRANE PROTEIN 12-JUN-22 8A4J TITLE HUMAN GDAP1, A247V MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GANGLIOSIDE-INDUCED DIFFERENTIATION-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDAP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GST FAMILY, MITOCHONDRIA, DISEASE MUTATION, DIMER, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SUTINEN,P.KURSULA REVDAT 2 07-FEB-24 8A4J 1 REMARK REVDAT 1 26-APR-23 8A4J 0 JRNL AUTH A.SUTINEN,D.PAFFENHOLZ,G.T.T.NGUYEN,S.RUSKAMO,A.E.TORDA, JRNL AUTH 2 P.KURSULA JRNL TITL CONSERVED INTRAMOLECULAR NETWORKS IN GDAP1 ARE CLOSELY JRNL TITL 2 CONNECTED TO CMT-LINKED MUTATIONS AND PROTEIN STABILITY. JRNL REF PLOS ONE V. 18 84532 2023 JRNL REFN ESSN 1932-6203 JRNL PMID 37058526 JRNL DOI 10.1371/JOURNAL.PONE.0284532 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2800 - 6.4600 0.99 2001 153 0.2353 0.2310 REMARK 3 2 6.4500 - 5.1300 1.00 1942 145 0.2656 0.3098 REMARK 3 3 5.1300 - 4.4800 0.99 1880 146 0.2153 0.2710 REMARK 3 4 4.4800 - 4.0700 1.00 1871 142 0.2308 0.2561 REMARK 3 5 4.0700 - 3.7800 1.00 1898 141 0.2323 0.3319 REMARK 3 6 3.7800 - 3.5600 1.00 1866 138 0.2251 0.2639 REMARK 3 7 3.5600 - 3.3800 1.00 1857 145 0.2769 0.3464 REMARK 3 8 3.3800 - 3.2300 0.99 1824 139 0.2570 0.2775 REMARK 3 9 3.2300 - 3.1100 0.99 1859 145 0.2535 0.2762 REMARK 3 10 3.1100 - 3.0000 1.00 1877 143 0.2618 0.2925 REMARK 3 11 3.0000 - 2.9100 1.00 1838 140 0.3114 0.3523 REMARK 3 12 2.9100 - 2.8200 1.00 1815 138 0.3663 0.3600 REMARK 3 13 2.8200 - 2.7500 1.00 1860 140 0.4483 0.4637 REMARK 3 14 2.7500 - 2.6800 0.99 1819 143 0.5489 0.5223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.487 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4080 REMARK 3 ANGLE : 1.449 5520 REMARK 3 CHIRALITY : 0.074 618 REMARK 3 PLANARITY : 0.013 699 REMARK 3 DIHEDRAL : 14.424 1554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9746 0.3300 -13.5359 REMARK 3 T TENSOR REMARK 3 T11: 0.7565 T22: 0.9388 REMARK 3 T33: 0.8665 T12: 0.1698 REMARK 3 T13: 0.0489 T23: 0.1527 REMARK 3 L TENSOR REMARK 3 L11: 7.5994 L22: 2.3333 REMARK 3 L33: 7.8387 L12: -0.3949 REMARK 3 L13: -0.5810 L23: 0.5689 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: -0.1698 S13: 0.3553 REMARK 3 S21: 0.1526 S22: -0.0867 S23: 0.1369 REMARK 3 S31: -0.3298 S32: -0.3556 S33: 0.0435 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8634 -7.9014 -26.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.7266 T22: 0.8278 REMARK 3 T33: 0.6748 T12: -0.2558 REMARK 3 T13: -0.0657 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 5.4424 L22: 2.1579 REMARK 3 L33: 7.9387 L12: -1.2803 REMARK 3 L13: -1.6390 L23: -0.6741 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.2957 S13: -0.1656 REMARK 3 S21: -0.3842 S22: 0.0835 S23: 0.5205 REMARK 3 S31: 1.0142 S32: -1.3033 S33: 0.0040 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2496 -5.2936 -9.0220 REMARK 3 T TENSOR REMARK 3 T11: 0.3936 T22: 0.6893 REMARK 3 T33: 0.6509 T12: -0.0248 REMARK 3 T13: 0.0189 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 7.6809 L22: 6.7164 REMARK 3 L33: 6.8672 L12: -4.7811 REMARK 3 L13: 0.3734 L23: 1.5178 REMARK 3 S TENSOR REMARK 3 S11: 0.1317 S12: 0.0751 S13: 0.3821 REMARK 3 S21: -0.3230 S22: 0.0007 S23: -0.1841 REMARK 3 S31: -0.2523 S32: 0.2588 S33: -0.1456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2141 -17.8681 6.1213 REMARK 3 T TENSOR REMARK 3 T11: 0.5767 T22: 0.8650 REMARK 3 T33: 0.7945 T12: -0.0129 REMARK 3 T13: -0.0275 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 6.6867 L22: 1.6176 REMARK 3 L33: 5.5160 L12: -0.4794 REMARK 3 L13: -3.3836 L23: 0.3669 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.1264 S13: 0.1193 REMARK 3 S21: 0.2231 S22: 0.2284 S23: -0.0057 REMARK 3 S31: -0.3056 S32: 0.5248 S33: 0.1568 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6803 -18.9783 3.9935 REMARK 3 T TENSOR REMARK 3 T11: 0.4513 T22: 0.6994 REMARK 3 T33: 0.5969 T12: 0.0002 REMARK 3 T13: -0.0386 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 7.1340 L22: 2.3916 REMARK 3 L33: 3.1384 L12: 0.1118 REMARK 3 L13: -1.9713 L23: -0.3736 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.3013 S13: -0.4799 REMARK 3 S21: 0.1107 S22: -0.3176 S23: -0.1851 REMARK 3 S31: 0.1600 S32: 0.2720 S33: 0.1948 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 23 through 72 or REMARK 3 resid 77 through 160 or resid 191 or REMARK 3 resid 194 or resid 200 through 228 or REMARK 3 resid 236 through 302)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7ALM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M DL-MALIC ACID (PH 7.3), 20% REMARK 280 (W/V) PEG3500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.64400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.96950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.84400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.96950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.64400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.84400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 GLY A 75 REMARK 465 ARG A 161 REMARK 465 SER A 162 REMARK 465 GLN A 163 REMARK 465 ILE A 164 REMARK 465 GLY A 165 REMARK 465 ASN A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 SER A 169 REMARK 465 GLU A 170 REMARK 465 LEU A 171 REMARK 465 LYS A 172 REMARK 465 LYS A 173 REMARK 465 LEU A 174 REMARK 465 ALA A 175 REMARK 465 GLU A 176 REMARK 465 GLU A 177 REMARK 465 ASN A 178 REMARK 465 PRO A 179 REMARK 465 ASP A 180 REMARK 465 LEU A 181 REMARK 465 GLN A 182 REMARK 465 GLU A 183 REMARK 465 ALA A 184 REMARK 465 TYR A 185 REMARK 465 ILE A 186 REMARK 465 ALA A 187 REMARK 465 LYS A 188 REMARK 465 SER B 73 REMARK 465 THR B 74 REMARK 465 GLY B 75 REMARK 465 GLU B 76 REMARK 465 GLN B 163 REMARK 465 ILE B 164 REMARK 465 GLY B 165 REMARK 465 ASN B 166 REMARK 465 THR B 167 REMARK 465 GLU B 168 REMARK 465 SER B 169 REMARK 465 GLU B 170 REMARK 465 LEU B 171 REMARK 465 LYS B 172 REMARK 465 LYS B 173 REMARK 465 LEU B 174 REMARK 465 ALA B 175 REMARK 465 GLU B 176 REMARK 465 GLU B 177 REMARK 465 ASN B 178 REMARK 465 PRO B 179 REMARK 465 ASP B 180 REMARK 465 LEU B 181 REMARK 465 GLN B 182 REMARK 465 GLU B 183 REMARK 465 ALA B 184 REMARK 465 TYR B 185 REMARK 465 ILE B 186 REMARK 465 ALA B 187 REMARK 465 LYS B 188 REMARK 465 GLN B 189 REMARK 465 LYS B 190 REMARK 465 ARG B 191 REMARK 465 LEU B 192 REMARK 465 LYS B 193 REMARK 465 SER B 194 REMARK 465 LYS B 195 REMARK 465 LEU B 196 REMARK 465 LEU B 197 REMARK 465 ASP B 198 REMARK 465 HIS B 199 REMARK 465 GLU B 229 REMARK 465 THR B 230 REMARK 465 PRO B 231 REMARK 465 GLU B 232 REMARK 465 GLU B 233 REMARK 465 GLY B 234 REMARK 465 GLN B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 82 OH TYR B 96 1.52 REMARK 500 HZ1 LYS A 47 OE1 GLU A 98 1.58 REMARK 500 OD1 ASP A 103 H ARG A 105 1.59 REMARK 500 OD2 ASP A 129 O HOH A 401 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 76 CD GLU A 76 OE2 0.086 REMARK 500 VAL A 247 CB VAL A 247 CG1 -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 64 71.30 49.84 REMARK 500 GLU A 89 140.35 82.14 REMARK 500 TRP A 238 -159.31 -95.18 REMARK 500 ASN A 270 59.52 38.10 REMARK 500 ASN B 64 70.71 52.21 REMARK 500 GLU B 89 138.65 84.70 REMARK 500 ARG B 225 87.08 -58.21 REMARK 500 TRP B 238 -158.47 -100.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7B2G RELATED DB: PDB REMARK 900 THE R120Q MUTANT DBREF 8A4J A 23 302 UNP Q8TB36 GDAP1_HUMAN 23 302 DBREF 8A4J B 23 302 UNP Q8TB36 GDAP1_HUMAN 23 302 SEQADV 8A4J VAL A 247 UNP Q8TB36 ALA 247 VARIANT SEQADV 8A4J VAL B 247 UNP Q8TB36 ALA 247 VARIANT SEQRES 1 A 280 GLU VAL LYS LEU ILE LEU TYR HIS TRP THR HIS SER PHE SEQRES 2 A 280 SER SER GLN LYS VAL ARG LEU VAL ILE ALA GLU LYS ALA SEQRES 3 A 280 LEU LYS CYS GLU GLU HIS ASP VAL SER LEU PRO LEU SER SEQRES 4 A 280 GLU HIS ASN GLU PRO TRP PHE MET ARG LEU ASN SER THR SEQRES 5 A 280 GLY GLU VAL PRO VAL LEU ILE HIS GLY GLU ASN ILE ILE SEQRES 6 A 280 CYS GLU ALA THR GLN ILE ILE ASP TYR LEU GLU GLN THR SEQRES 7 A 280 PHE LEU ASP GLU ARG THR PRO ARG LEU MET PRO ASP LYS SEQRES 8 A 280 GLU SER MET TYR TYR PRO ARG VAL GLN HIS TYR ARG GLU SEQRES 9 A 280 LEU LEU ASP SER LEU PRO MET ASP ALA TYR THR HIS GLY SEQRES 10 A 280 CYS ILE LEU HIS PRO GLU LEU THR VAL ASP SER MET ILE SEQRES 11 A 280 PRO ALA TYR ALA THR THR ARG ILE ARG SER GLN ILE GLY SEQRES 12 A 280 ASN THR GLU SER GLU LEU LYS LYS LEU ALA GLU GLU ASN SEQRES 13 A 280 PRO ASP LEU GLN GLU ALA TYR ILE ALA LYS GLN LYS ARG SEQRES 14 A 280 LEU LYS SER LYS LEU LEU ASP HIS ASP ASN VAL LYS TYR SEQRES 15 A 280 LEU LYS LYS ILE LEU ASP GLU LEU GLU LYS VAL LEU ASP SEQRES 16 A 280 GLN VAL GLU THR GLU LEU GLN ARG ARG ASN GLU GLU THR SEQRES 17 A 280 PRO GLU GLU GLY GLN GLN PRO TRP LEU CYS GLY GLU SER SEQRES 18 A 280 PHE THR LEU VAL ASP VAL SER LEU ALA VAL THR LEU HIS SEQRES 19 A 280 ARG LEU LYS PHE LEU GLY PHE ALA ARG ARG ASN TRP GLY SEQRES 20 A 280 ASN GLY LYS ARG PRO ASN LEU GLU THR TYR TYR GLU ARG SEQRES 21 A 280 VAL LEU LYS ARG LYS THR PHE ASN LYS VAL LEU GLY HIS SEQRES 22 A 280 VAL ASN ASN ILE LEU ILE SER SEQRES 1 B 280 GLU VAL LYS LEU ILE LEU TYR HIS TRP THR HIS SER PHE SEQRES 2 B 280 SER SER GLN LYS VAL ARG LEU VAL ILE ALA GLU LYS ALA SEQRES 3 B 280 LEU LYS CYS GLU GLU HIS ASP VAL SER LEU PRO LEU SER SEQRES 4 B 280 GLU HIS ASN GLU PRO TRP PHE MET ARG LEU ASN SER THR SEQRES 5 B 280 GLY GLU VAL PRO VAL LEU ILE HIS GLY GLU ASN ILE ILE SEQRES 6 B 280 CYS GLU ALA THR GLN ILE ILE ASP TYR LEU GLU GLN THR SEQRES 7 B 280 PHE LEU ASP GLU ARG THR PRO ARG LEU MET PRO ASP LYS SEQRES 8 B 280 GLU SER MET TYR TYR PRO ARG VAL GLN HIS TYR ARG GLU SEQRES 9 B 280 LEU LEU ASP SER LEU PRO MET ASP ALA TYR THR HIS GLY SEQRES 10 B 280 CYS ILE LEU HIS PRO GLU LEU THR VAL ASP SER MET ILE SEQRES 11 B 280 PRO ALA TYR ALA THR THR ARG ILE ARG SER GLN ILE GLY SEQRES 12 B 280 ASN THR GLU SER GLU LEU LYS LYS LEU ALA GLU GLU ASN SEQRES 13 B 280 PRO ASP LEU GLN GLU ALA TYR ILE ALA LYS GLN LYS ARG SEQRES 14 B 280 LEU LYS SER LYS LEU LEU ASP HIS ASP ASN VAL LYS TYR SEQRES 15 B 280 LEU LYS LYS ILE LEU ASP GLU LEU GLU LYS VAL LEU ASP SEQRES 16 B 280 GLN VAL GLU THR GLU LEU GLN ARG ARG ASN GLU GLU THR SEQRES 17 B 280 PRO GLU GLU GLY GLN GLN PRO TRP LEU CYS GLY GLU SER SEQRES 18 B 280 PHE THR LEU VAL ASP VAL SER LEU ALA VAL THR LEU HIS SEQRES 19 B 280 ARG LEU LYS PHE LEU GLY PHE ALA ARG ARG ASN TRP GLY SEQRES 20 B 280 ASN GLY LYS ARG PRO ASN LEU GLU THR TYR TYR GLU ARG SEQRES 21 B 280 VAL LEU LYS ARG LYS THR PHE ASN LYS VAL LEU GLY HIS SEQRES 22 B 280 VAL ASN ASN ILE LEU ILE SER FORMUL 3 HOH *11(H2 O) HELIX 1 AA1 SER A 34 ALA A 48 1 15 HELIX 2 AA2 PRO A 66 ARG A 70 5 5 HELIX 3 AA3 GLU A 89 PHE A 101 1 13 HELIX 4 AA4 TYR A 117 SER A 130 1 14 HELIX 5 AA5 PRO A 132 LEU A 142 1 11 HELIX 6 AA6 HIS A 143 THR A 147 5 5 HELIX 7 AA7 PRO A 153 ILE A 160 1 8 HELIX 8 AA8 LYS A 190 THR A 230 1 41 HELIX 9 AA9 THR A 245 GLY A 262 1 18 HELIX 10 AB1 ARG A 273 ARG A 286 1 14 HELIX 11 AB2 ARG A 286 GLY A 294 1 9 HELIX 12 AB3 SER B 34 LYS B 47 1 14 HELIX 13 AB4 PRO B 66 ARG B 70 5 5 HELIX 14 AB5 GLU B 89 PHE B 101 1 13 HELIX 15 AB6 TYR B 117 ASP B 129 1 13 HELIX 16 AB7 PRO B 132 LEU B 142 1 11 HELIX 17 AB8 HIS B 143 THR B 147 5 5 HELIX 18 AB9 PRO B 153 ARG B 161 1 9 HELIX 19 AC1 ASN B 201 GLN B 224 1 24 HELIX 20 AC2 THR B 245 GLY B 262 1 18 HELIX 21 AC3 ARG B 273 ARG B 286 1 14 HELIX 22 AC4 ARG B 286 GLY B 294 1 9 SHEET 1 AA1 4 GLU A 52 ASP A 55 0 SHEET 2 AA1 4 LEU A 26 HIS A 30 1 N LEU A 28 O HIS A 54 SHEET 3 AA1 4 VAL A 79 HIS A 82 -1 O ILE A 81 N ILE A 27 SHEET 4 AA1 4 ASN A 85 CYS A 88 -1 O ILE A 87 N LEU A 80 SHEET 1 AA2 4 GLU B 52 ASP B 55 0 SHEET 2 AA2 4 LEU B 26 HIS B 30 1 N LEU B 26 O GLU B 52 SHEET 3 AA2 4 VAL B 79 HIS B 82 -1 O ILE B 81 N ILE B 27 SHEET 4 AA2 4 ASN B 85 CYS B 88 -1 O ILE B 87 N LEU B 80 SSBOND 1 CYS A 88 CYS B 88 1555 1555 2.11 CRYST1 73.288 115.688 115.939 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008625 0.00000 MTRIX1 1 -0.848031 0.528414 -0.040269 33.41627 1 MTRIX2 1 0.529608 0.847753 -0.028800 -10.35604 1 MTRIX3 1 0.018920 -0.045750 -0.998774 -23.55916 1