HEADER LYASE 14-JUN-22 8A5C TITLE CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS ENDONUCLEASE III-1 Y100L TITLE 2 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE III; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: DR_2438; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA GLYCOSYLASE, RESISTANT BACTERIUM, DEINOCOCCUS RADIODURANS, KEYWDS 2 MUTATIONS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.T.BORGES,F.ROLLO,E.MOE REVDAT 2 01-MAY-24 8A5C 1 REMARK REVDAT 1 03-AUG-22 8A5C 0 JRNL AUTH F.ROLLO,P.T.BORGES,C.M.SILVEIRA,M.T.G.ROSA,S.TODOROVIC,E.MOE JRNL TITL DISENTANGLING UNUSUAL CATALYTIC PROPERTIES AND THE ROLE OF JRNL TITL 2 THE [4FE-4S] CLUSTER OF THREE ENDONUCLEASE III FROM THE JRNL TITL 3 EXTREMOPHILE D. RADIODURANS. JRNL REF MOLECULES V. 27 2022 JRNL REFN ESSN 1420-3049 JRNL PMID 35807515 JRNL DOI 10.3390/MOLECULES27134270 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3026 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 17528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6290 - 4.4645 0.97 1376 152 0.1461 0.2036 REMARK 3 2 4.4645 - 3.5441 0.97 1341 152 0.1628 0.2095 REMARK 3 3 3.5441 - 3.0962 0.97 1310 142 0.2158 0.2814 REMARK 3 4 3.0962 - 2.8132 0.98 1333 148 0.2312 0.2896 REMARK 3 5 2.8132 - 2.6116 0.97 1315 145 0.2326 0.2533 REMARK 3 6 2.6116 - 2.4576 0.97 1321 141 0.2326 0.3027 REMARK 3 7 2.4576 - 2.3345 0.97 1309 145 0.2485 0.2925 REMARK 3 8 2.3345 - 2.2329 0.98 1319 141 0.2688 0.3537 REMARK 3 9 2.2329 - 2.1470 0.96 1287 149 0.2767 0.3477 REMARK 3 10 2.1470 - 2.0729 0.97 1311 149 0.2889 0.3249 REMARK 3 11 2.0729 - 2.0081 0.97 1291 144 0.3322 0.3586 REMARK 3 12 2.0081 - 1.9510 0.95 1271 136 0.3566 0.3738 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 19:26) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5163 25.3152 2.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.9643 T22: 0.8140 REMARK 3 T33: 0.7617 T12: 0.1870 REMARK 3 T13: -0.0415 T23: 0.1655 REMARK 3 L TENSOR REMARK 3 L11: 5.0217 L22: 3.2729 REMARK 3 L33: 4.7489 L12: 3.8132 REMARK 3 L13: 4.2824 L23: 3.8349 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: 0.4408 S13: 3.0252 REMARK 3 S21: -0.8650 S22: 0.0092 S23: 1.0933 REMARK 3 S31: -1.6619 S32: -1.9590 S33: 0.0684 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 27:47) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3478 12.2856 10.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.5785 T22: 0.9246 REMARK 3 T33: 0.6941 T12: 0.1429 REMARK 3 T13: 0.0896 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 7.6094 L22: 2.7418 REMARK 3 L33: 8.9117 L12: 1.7835 REMARK 3 L13: -0.3516 L23: -3.4124 REMARK 3 S TENSOR REMARK 3 S11: 0.2366 S12: -0.1481 S13: 0.1962 REMARK 3 S21: 1.4095 S22: 0.9505 S23: 0.7877 REMARK 3 S31: -0.2679 S32: -1.6977 S33: -0.9579 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 48:67) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0725 -6.6686 9.3997 REMARK 3 T TENSOR REMARK 3 T11: 0.8748 T22: 0.8343 REMARK 3 T33: 1.6350 T12: 0.0849 REMARK 3 T13: -0.3290 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 4.2221 L22: 0.2077 REMARK 3 L33: 7.8723 L12: -0.6775 REMARK 3 L13: 4.5697 L23: -0.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.1471 S12: -0.5948 S13: 0.4297 REMARK 3 S21: -1.0081 S22: 0.5500 S23: 2.6727 REMARK 3 S31: -0.7980 S32: -1.3720 S33: -0.4947 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 68:80) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0042 -12.8325 1.2111 REMARK 3 T TENSOR REMARK 3 T11: 1.2531 T22: 0.9206 REMARK 3 T33: 1.0994 T12: -0.1174 REMARK 3 T13: -0.2402 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 8.4598 L22: 5.0631 REMARK 3 L33: 3.8412 L12: 0.4608 REMARK 3 L13: 0.8864 L23: -4.2624 REMARK 3 S TENSOR REMARK 3 S11: -0.1749 S12: 1.6190 S13: -0.1303 REMARK 3 S21: -1.5529 S22: 0.2794 S23: 1.4327 REMARK 3 S31: -1.2468 S32: 0.0408 S33: -0.0920 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 81:93) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1980 -17.7219 11.0298 REMARK 3 T TENSOR REMARK 3 T11: 0.8395 T22: 0.6464 REMARK 3 T33: 1.0916 T12: 0.0017 REMARK 3 T13: -0.0808 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 4.7350 L22: 4.2695 REMARK 3 L33: 8.9127 L12: 4.4244 REMARK 3 L13: 4.4734 L23: 3.3594 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -1.2873 S13: -0.3204 REMARK 3 S21: 0.1371 S22: -0.2381 S23: -2.1871 REMARK 3 S31: 0.7955 S32: 0.2935 S33: 0.2864 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 94:121) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2973 -11.5485 2.3420 REMARK 3 T TENSOR REMARK 3 T11: 1.2730 T22: 0.7451 REMARK 3 T33: 0.8713 T12: -0.2897 REMARK 3 T13: 0.2105 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 9.2031 L22: 4.9119 REMARK 3 L33: 7.0699 L12: 5.2555 REMARK 3 L13: 3.3673 L23: 3.4322 REMARK 3 S TENSOR REMARK 3 S11: -1.9717 S12: 1.4729 S13: 0.0255 REMARK 3 S21: -3.2883 S22: 1.3214 S23: -1.3162 REMARK 3 S31: -0.8514 S32: 0.6947 S33: 0.4820 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 122:139) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4121 -2.9110 22.2921 REMARK 3 T TENSOR REMARK 3 T11: 1.0246 T22: 0.7976 REMARK 3 T33: 0.5849 T12: -0.0208 REMARK 3 T13: -0.2133 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 9.5350 L22: 7.8466 REMARK 3 L33: 3.5453 L12: -3.7319 REMARK 3 L13: -1.8240 L23: 4.9135 REMARK 3 S TENSOR REMARK 3 S11: -0.1946 S12: -1.1560 S13: -0.2278 REMARK 3 S21: 2.1106 S22: 0.1694 S23: 0.1294 REMARK 3 S31: 1.5793 S32: -0.2695 S33: 0.0184 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 140:185) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8470 5.1378 10.3933 REMARK 3 T TENSOR REMARK 3 T11: 0.4869 T22: 0.4217 REMARK 3 T33: 0.4502 T12: 0.0244 REMARK 3 T13: -0.0572 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 6.0805 L22: 3.4947 REMARK 3 L33: 4.3684 L12: -3.2622 REMARK 3 L13: 3.2120 L23: -2.2913 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: -0.1803 S13: 0.1907 REMARK 3 S21: 0.0782 S22: -0.0401 S23: -0.2591 REMARK 3 S31: 0.3548 S32: -0.0513 S33: -0.0746 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 186:209) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6373 12.6462 10.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.3794 T22: 0.4908 REMARK 3 T33: 0.4141 T12: -0.0056 REMARK 3 T13: -0.0179 T23: -0.1018 REMARK 3 L TENSOR REMARK 3 L11: 8.1801 L22: 8.3327 REMARK 3 L33: 4.8265 L12: 3.7899 REMARK 3 L13: -5.1235 L23: -5.6903 REMARK 3 S TENSOR REMARK 3 S11: -0.3563 S12: -0.6785 S13: 0.5016 REMARK 3 S21: 0.0054 S22: 0.0907 S23: -0.5085 REMARK 3 S31: 0.4012 S32: 0.9175 S33: 0.2580 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 210:221) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2071 2.4230 7.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.5578 T22: 0.6857 REMARK 3 T33: 0.5331 T12: -0.0215 REMARK 3 T13: -0.0580 T23: 0.1319 REMARK 3 L TENSOR REMARK 3 L11: 9.2530 L22: 7.3852 REMARK 3 L33: 3.6935 L12: -1.1013 REMARK 3 L13: 5.4421 L23: -2.2743 REMARK 3 S TENSOR REMARK 3 S11: 0.6948 S12: -1.0170 S13: -0.9531 REMARK 3 S21: -0.2170 S22: 0.4447 S23: 0.5717 REMARK 3 S31: 0.1412 S32: -1.5997 S33: -0.9750 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 222:245) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9255 10.0556 -3.2868 REMARK 3 T TENSOR REMARK 3 T11: 0.4650 T22: 0.5942 REMARK 3 T33: 0.4435 T12: 0.0237 REMARK 3 T13: -0.1166 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 6.6814 L22: 7.4824 REMARK 3 L33: 8.6444 L12: -1.0108 REMARK 3 L13: -2.0582 L23: -0.7569 REMARK 3 S TENSOR REMARK 3 S11: 0.3606 S12: 0.4735 S13: -0.0604 REMARK 3 S21: -0.1757 S22: -0.2433 S23: 0.2497 REMARK 3 S31: 0.0562 S32: -0.8872 S33: -0.1238 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 246:255) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4730 12.2881 -10.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.7105 T22: 0.8139 REMARK 3 T33: 0.4955 T12: 0.1447 REMARK 3 T13: -0.0260 T23: 0.1147 REMARK 3 L TENSOR REMARK 3 L11: 8.2810 L22: 8.9060 REMARK 3 L33: 8.3801 L12: -5.0667 REMARK 3 L13: 3.5982 L23: -1.9294 REMARK 3 S TENSOR REMARK 3 S11: -0.2396 S12: 1.4198 S13: -0.0884 REMARK 3 S21: 0.1611 S22: -0.1834 S23: 0.3184 REMARK 3 S31: 0.5989 S32: 1.0821 S33: 0.3284 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1292123690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17563 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 44.629 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: ENDO III-1 WILD-TYPE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 9.0, 30% (W/V) PEG 500 REMARK 280 MME AND 0.1 M SODIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.26300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.91350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.26300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.91350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 256 REMARK 465 PRO A 257 REMARK 465 VAL A 258 REMARK 465 LYS A 259 REMARK 465 GLY A 260 REMARK 465 GLU A 261 REMARK 465 LYS A 262 REMARK 465 PRO A 263 REMARK 465 ALA A 264 REMARK 465 LYS A 265 REMARK 465 GLY A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 49 OH TYR A 210 2.13 REMARK 500 NH2 ARG A 188 O SER A 254 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 67 N - CA - C ANGL. DEV. = 30.1 DEGREES REMARK 500 ARG A 68 N - CA - C ANGL. DEV. = -25.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 44.89 -105.87 REMARK 500 PRO A 50 30.08 -93.08 REMARK 500 ARG A 68 71.39 -158.63 REMARK 500 ASP A 86 -177.00 -68.31 REMARK 500 LEU A 107 75.85 49.19 REMARK 500 TYR A 129 64.28 -60.91 REMARK 500 ASP A 136 45.53 -105.74 REMARK 500 VAL A 223 -64.19 -120.97 REMARK 500 ARG A 228 69.32 37.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 122 O REMARK 620 2 ALA A 125 O 93.8 REMARK 620 3 GLY A 127 O 151.1 84.6 REMARK 620 4 GLY A 128 O 109.6 156.3 72.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 147 O REMARK 620 2 VAL A 152 O 78.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 224 SG REMARK 620 2 SF4 A 301 S2 118.0 REMARK 620 3 SF4 A 301 S3 110.6 105.9 REMARK 620 4 SF4 A 301 S4 112.8 103.4 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 231 SG REMARK 620 2 SF4 A 301 S1 107.6 REMARK 620 3 SF4 A 301 S2 118.2 104.5 REMARK 620 4 SF4 A 301 S4 117.4 103.8 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 SF4 A 301 S1 114.6 REMARK 620 3 SF4 A 301 S3 115.5 104.8 REMARK 620 4 SF4 A 301 S4 111.5 102.9 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 240 SG REMARK 620 2 SF4 A 301 S1 110.4 REMARK 620 3 SF4 A 301 S2 112.7 103.5 REMARK 620 4 SF4 A 301 S3 117.9 105.8 105.4 REMARK 620 N 1 2 3 DBREF 8A5C A 19 266 UNP Q9RRQ0 Q9RRQ0_DEIRA 12 259 SEQADV 8A5C LEU A 107 UNP Q9RRQ0 TYR 100 ENGINEERED MUTATION SEQRES 1 A 248 ALA PRO LEU ASN ALA ALA ARG PRO ALA GLU GLU ARG ALA SEQRES 2 A 248 ALA LEU LEU ALA TRP VAL LYS GLU ARG LEU HIS GLU GLU SEQRES 3 A 248 TYR GLY ASP GLN ASP PRO THR PRO ARG ARG ASP PRO MET SEQRES 4 A 248 HIS GLU LEU ILE SER THR ILE LEU SER GLN ARG THR THR SEQRES 5 A 248 HIS ALA ASP GLU GLU ALA ALA TYR GLN GLU LEU ARG THR SEQRES 6 A 248 LEU GLY ASP TRP ASP ALA ILE THR LEU ALA PRO THR ASP SEQRES 7 A 248 ALA VAL ALA HIS ALA ILE ARG ARG SER ASN LEU PRO GLU SEQRES 8 A 248 SER LYS ALA PRO ARG ILE GLN GLU THR LEU ARG ARG ILE SEQRES 9 A 248 LYS ALA ALA PRO GLY GLY TYR ASP LEU ASP PHE LEU ARG SEQRES 10 A 248 ASP LEU PRO VAL LYS ASP ALA LEU LYS TRP LEU THR ASP SEQRES 11 A 248 LEU PRO GLY VAL GLY VAL LYS THR ALA SER LEU VAL LEU SEQRES 12 A 248 LEU PHE ASN TYR ALA ARG PRO VAL PHE PRO VAL ASP THR SEQRES 13 A 248 HIS VAL HIS ARG VAL SER THR ARG VAL GLY VAL ILE PRO SEQRES 14 A 248 ARG MET GLY GLU GLN ALA ALA HIS ARG ALA LEU LEU ALA SEQRES 15 A 248 LEU LEU PRO PRO ASP PRO PRO TYR LEU TYR GLU LEU HIS SEQRES 16 A 248 ILE ASN PHE LEU SER HIS GLY ARG GLN VAL CYS THR TRP SEQRES 17 A 248 THR ARG PRO LYS CYS GLY LYS CYS ILE LEU ARG GLU ARG SEQRES 18 A 248 CYS ASP ALA TYR ALA LEU TYR GLY ASP LYS VAL PRO SER SEQRES 19 A 248 PHE SER GLU LYS PRO VAL LYS GLY GLU LYS PRO ALA LYS SEQRES 20 A 248 GLY HET SF4 A 301 8 HET MG A 302 1 HET MG A 303 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MG MAGNESIUM ION FORMUL 2 SF4 FE4 S4 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *7(H2 O) HELIX 1 AA1 LEU A 21 ARG A 25 5 5 HELIX 2 AA2 PRO A 26 GLY A 46 1 21 HELIX 3 AA3 ASP A 55 SER A 66 1 12 HELIX 4 AA4 THR A 70 ARG A 82 1 13 HELIX 5 AA5 THR A 83 GLY A 85 5 3 HELIX 6 AA6 ASP A 86 ALA A 93 1 8 HELIX 7 AA7 PRO A 94 ILE A 102 1 9 HELIX 8 AA8 LEU A 107 ALA A 124 1 18 HELIX 9 AA9 LEU A 131 ARG A 135 5 5 HELIX 10 AB1 PRO A 138 ASP A 148 1 11 HELIX 11 AB2 GLY A 153 ALA A 166 1 14 HELIX 12 AB3 ASP A 173 GLY A 184 1 12 HELIX 13 AB4 GLY A 190 ALA A 200 1 11 HELIX 14 AB5 ASP A 205 VAL A 223 1 19 HELIX 15 AB6 LYS A 230 CYS A 234 5 5 HELIX 16 AB7 LEU A 236 ARG A 239 5 4 HELIX 17 AB8 CYS A 240 GLY A 247 1 8 HELIX 18 AB9 ASP A 248 VAL A 250 5 3 LINK O ILE A 122 MG MG A 302 1555 1555 2.80 LINK O ALA A 125 MG MG A 302 1555 1555 2.44 LINK O GLY A 127 MG MG A 302 1555 1555 1.99 LINK O GLY A 128 MG MG A 302 1555 1555 2.46 LINK O THR A 147 MG MG A 303 1555 1555 2.96 LINK O VAL A 152 MG MG A 303 1555 1555 2.59 LINK SG CYS A 224 FE1 SF4 A 301 1555 1555 2.34 LINK SG CYS A 231 FE3 SF4 A 301 1555 1555 2.30 LINK SG CYS A 234 FE2 SF4 A 301 1555 1555 2.17 LINK SG CYS A 240 FE4 SF4 A 301 1555 1555 2.12 CRYST1 178.526 37.827 36.550 90.00 90.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005601 0.000000 0.000059 0.00000 SCALE2 0.000000 0.026436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027361 0.00000