HEADER OXIDOREDUCTASE 20-JUN-22 8A6W TITLE CRYSTAL STRUCTURE OF CYP142 FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH CHOLESTENONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROID C26-MONOOXYGENASE; COMPND 3 CHAIN: B, E; COMPND 4 SYNONYM: CHOLEST-4-EN-3-ONE C26-MONOOXYGENASE,CHOLEST-4-EN-3-ONE C26- COMPND 5 MONOOXYGENASE [(25R)-3-OXOCHOLEST-4-EN-26-OATE FORMING],CHOLESTEROL COMPND 6 C26-MONOOXYGENASE,CHOLESTEROL C26-MONOOXYGENASE [(25R)-3BETA- COMPND 7 HYDROXYCHOLEST-5-EN-26-OATE FORMING],CYTOCHROME P450 142,STEROID C27- COMPND 8 MONOOXYGENASE; COMPND 9 EC: 1.14.15.28; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 GENE: CYP142, CYP142A1, RV3518C, MTV023.25C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CYP, P450, CHOLESTENONE, COMPLEX, CYP142, TUBERCULOSIS, CHOLESTEROL, KEYWDS 2 CYTOCHROME, MONOOXYGENASE, HYDROXYLASE, HEME, ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SNEE,C.AMADI,C.LEVY REVDAT 2 07-FEB-24 8A6W 1 REMARK REVDAT 1 05-JUL-23 8A6W 0 JRNL AUTH M.SNEE,C.AMADI JRNL TITL CRYSTAL STRUCTURE OF CYP142 FROM MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 IN COMPLEX WITH CHOLESTENONE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.7000 - 6.1900 0.99 2940 135 0.2088 0.2138 REMARK 3 2 6.1900 - 4.9100 1.00 2827 126 0.1878 0.2175 REMARK 3 3 4.9100 - 4.2900 1.00 2764 143 0.1477 0.1717 REMARK 3 4 4.2900 - 3.9000 1.00 2723 144 0.1553 0.1807 REMARK 3 5 3.9000 - 3.6200 1.00 2744 155 0.1657 0.2135 REMARK 3 6 3.6200 - 3.4100 1.00 2734 134 0.1935 0.2474 REMARK 3 7 3.4100 - 3.2400 1.00 2734 139 0.2043 0.2293 REMARK 3 8 3.2400 - 3.1000 1.00 2716 142 0.2050 0.2524 REMARK 3 9 3.1000 - 2.9800 1.00 2675 143 0.2082 0.2443 REMARK 3 10 2.9800 - 2.8700 1.00 2707 131 0.2135 0.2274 REMARK 3 11 2.8700 - 2.7800 1.00 2697 147 0.2095 0.2778 REMARK 3 12 2.7800 - 2.7000 1.00 2706 139 0.2073 0.2495 REMARK 3 13 2.7000 - 2.6300 1.00 2668 154 0.1986 0.2188 REMARK 3 14 2.6300 - 2.5700 1.00 2701 141 0.2140 0.2714 REMARK 3 15 2.5700 - 2.5100 1.00 2703 139 0.2054 0.2717 REMARK 3 16 2.5100 - 2.4600 1.00 2689 137 0.2102 0.2394 REMARK 3 17 2.4600 - 2.4100 1.00 2678 141 0.2149 0.2716 REMARK 3 18 2.4100 - 2.3600 1.00 2662 141 0.2195 0.2224 REMARK 3 19 2.3600 - 2.3200 1.00 2729 118 0.2273 0.2668 REMARK 3 20 2.3200 - 2.2800 1.00 2674 140 0.2330 0.2814 REMARK 3 21 2.2800 - 2.2400 1.00 2688 158 0.2420 0.2987 REMARK 3 22 2.2400 - 2.2100 1.00 2641 140 0.2503 0.2942 REMARK 3 23 2.2100 - 2.1800 1.00 2682 147 0.2575 0.2798 REMARK 3 24 2.1800 - 2.1500 1.00 2673 143 0.2703 0.3362 REMARK 3 25 2.1500 - 2.1200 1.00 2655 116 0.2835 0.3245 REMARK 3 26 2.1200 - 2.0900 1.00 2728 136 0.2962 0.3342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6463 REMARK 3 ANGLE : 0.620 8811 REMARK 3 CHIRALITY : 0.036 973 REMARK 3 PLANARITY : 0.004 1160 REMARK 3 DIHEDRAL : 7.465 905 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 63.8619 -43.2121 -37.0058 REMARK 3 T TENSOR REMARK 3 T11: 0.2013 T22: 0.1881 REMARK 3 T33: 0.2240 T12: -0.0017 REMARK 3 T13: -0.0062 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.5473 L22: 0.0810 REMARK 3 L33: 0.6258 L12: -0.0158 REMARK 3 L13: -0.3313 L23: 0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0006 S13: 0.1609 REMARK 3 S21: 0.0003 S22: -0.0597 S23: -0.0034 REMARK 3 S31: -0.0479 S32: -0.0010 S33: 0.0463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 58.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.90500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 MET E -19 REMARK 465 GLY E -18 REMARK 465 SER E -17 REMARK 465 SER E -16 REMARK 465 HIS E -15 REMARK 465 HIS E -14 REMARK 465 HIS E -13 REMARK 465 HIS E -12 REMARK 465 HIS E -11 REMARK 465 HIS E -10 REMARK 465 SER E -9 REMARK 465 SER E -8 REMARK 465 GLY E -7 REMARK 465 LEU E -6 REMARK 465 VAL E -5 REMARK 465 PRO E -4 REMARK 465 ARG E -3 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 GLU E 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU E 122 O HOH E 501 2.05 REMARK 500 O HOH B 695 O HOH B 696 2.10 REMARK 500 O HOH E 725 O HOH E 732 2.13 REMARK 500 O HOH B 566 O HOH B 717 2.18 REMARK 500 O HOH E 741 O HOH E 759 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 68 57.95 -107.56 REMARK 500 LEU B 129 -52.97 -132.05 REMARK 500 THR B 198 -162.19 -127.56 REMARK 500 ASP B 200 -177.48 -68.37 REMARK 500 ASP B 211 84.69 -0.68 REMARK 500 THR B 234 -70.38 -126.50 REMARK 500 PHE B 380 -76.10 -117.02 REMARK 500 MET B 387 77.77 -156.20 REMARK 500 GLN E 31 78.64 -155.83 REMARK 500 SER E 164 142.06 -173.86 REMARK 500 THR E 198 -158.34 -119.36 REMARK 500 THR E 234 -67.76 -123.93 REMARK 500 ALA E 275 67.12 39.36 REMARK 500 PHE E 335 148.23 -170.48 REMARK 500 LEU E 361 61.50 -119.77 REMARK 500 PHE E 380 -76.89 -121.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 729 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 730 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B 731 DISTANCE = 7.74 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 340 SG REMARK 620 2 HEM B 402 NA 102.8 REMARK 620 3 HEM B 402 NB 88.6 88.7 REMARK 620 4 HEM B 402 NC 90.9 166.2 89.8 REMARK 620 5 HEM B 402 ND 104.8 88.9 166.6 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 340 SG REMARK 620 2 HEM E 402 NA 104.0 REMARK 620 3 HEM E 402 NB 88.7 90.2 REMARK 620 4 HEM E 402 NC 88.9 167.0 89.3 REMARK 620 5 HEM E 402 ND 103.1 87.3 168.1 90.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XKR RELATED DB: PDB REMARK 900 2XKR CONTAINS THE SAME PROTEIN IN THE ABSENCE OF SUBSTRATE DBREF 8A6W B 1 398 UNP P9WPL5 CP142_MYCTU 1 398 DBREF 8A6W E 1 398 UNP P9WPL5 CP142_MYCTU 1 398 SEQADV 8A6W MET B -19 UNP P9WPL5 INITIATING METHIONINE SEQADV 8A6W GLY B -18 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER B -17 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER B -16 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B -15 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B -14 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B -13 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B -12 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B -11 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B -10 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER B -9 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER B -8 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W GLY B -7 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W LEU B -6 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W VAL B -5 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W PRO B -4 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W ARG B -3 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W GLY B -2 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER B -1 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS B 0 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W MET E -19 UNP P9WPL5 INITIATING METHIONINE SEQADV 8A6W GLY E -18 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER E -17 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER E -16 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E -15 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E -14 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E -13 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E -12 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E -11 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E -10 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER E -9 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER E -8 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W GLY E -7 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W LEU E -6 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W VAL E -5 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W PRO E -4 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W ARG E -3 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W GLY E -2 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W SER E -1 UNP P9WPL5 EXPRESSION TAG SEQADV 8A6W HIS E 0 UNP P9WPL5 EXPRESSION TAG SEQRES 1 B 418 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 418 LEU VAL PRO ARG GLY SER HIS MET THR GLU ALA PRO ASP SEQRES 3 B 418 VAL ASP LEU ALA ASP GLY ASN PHE TYR ALA SER ARG GLU SEQRES 4 B 418 ALA ARG ALA ALA TYR ARG TRP MET ARG ALA ASN GLN PRO SEQRES 5 B 418 VAL PHE ARG ASP ARG ASN GLY LEU ALA ALA ALA SER THR SEQRES 6 B 418 TYR GLN ALA VAL ILE ASP ALA GLU ARG GLN PRO GLU LEU SEQRES 7 B 418 PHE SER ASN ALA GLY GLY ILE ARG PRO ASP GLN PRO ALA SEQRES 8 B 418 LEU PRO MET MET ILE ASP MET ASP ASP PRO ALA HIS LEU SEQRES 9 B 418 LEU ARG ARG LYS LEU VAL ASN ALA GLY PHE THR ARG LYS SEQRES 10 B 418 ARG VAL LYS ASP LYS GLU ALA SER ILE ALA ALA LEU CYS SEQRES 11 B 418 ASP THR LEU ILE ASP ALA VAL CYS GLU ARG GLY GLU CYS SEQRES 12 B 418 ASP PHE VAL ARG ASP LEU ALA ALA PRO LEU PRO MET ALA SEQRES 13 B 418 VAL ILE GLY ASP MET LEU GLY VAL ARG PRO GLU GLN ARG SEQRES 14 B 418 ASP MET PHE LEU ARG TRP SER ASP ASP LEU VAL THR PHE SEQRES 15 B 418 LEU SER SER HIS VAL SER GLN GLU ASP PHE GLN ILE THR SEQRES 16 B 418 MET ASP ALA PHE ALA ALA TYR ASN ASP PHE THR ARG ALA SEQRES 17 B 418 THR ILE ALA ALA ARG ARG ALA ASP PRO THR ASP ASP LEU SEQRES 18 B 418 VAL SER VAL LEU VAL SER SER GLU VAL ASP GLY GLU ARG SEQRES 19 B 418 LEU SER ASP ASP GLU LEU VAL MET GLU THR LEU LEU ILE SEQRES 20 B 418 LEU ILE GLY GLY ASP GLU THR THR ARG HIS THR LEU SER SEQRES 21 B 418 GLY GLY THR GLU GLN LEU LEU ARG ASN ARG ASP GLN TRP SEQRES 22 B 418 ASP LEU LEU GLN ARG ASP PRO SER LEU LEU PRO GLY ALA SEQRES 23 B 418 ILE GLU GLU MET LEU ARG TRP THR ALA PRO VAL LYS ASN SEQRES 24 B 418 MET CYS ARG VAL LEU THR ALA ASP THR GLU PHE HIS GLY SEQRES 25 B 418 THR ALA LEU CYS ALA GLY GLU LYS MET MET LEU LEU PHE SEQRES 26 B 418 GLU SER ALA ASN PHE ASP GLU ALA VAL PHE CYS GLU PRO SEQRES 27 B 418 GLU LYS PHE ASP VAL GLN ARG ASN PRO ASN SER HIS LEU SEQRES 28 B 418 ALA PHE GLY PHE GLY THR HIS PHE CYS LEU GLY ASN GLN SEQRES 29 B 418 LEU ALA ARG LEU GLU LEU SER LEU MET THR GLU ARG VAL SEQRES 30 B 418 LEU ARG ARG LEU PRO ASP LEU ARG LEU VAL ALA ASP ASP SEQRES 31 B 418 SER VAL LEU PRO LEU ARG PRO ALA ASN PHE VAL SER GLY SEQRES 32 B 418 LEU GLU SER MET PRO VAL VAL PHE THR PRO SER PRO PRO SEQRES 33 B 418 LEU GLY SEQRES 1 E 418 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 E 418 LEU VAL PRO ARG GLY SER HIS MET THR GLU ALA PRO ASP SEQRES 3 E 418 VAL ASP LEU ALA ASP GLY ASN PHE TYR ALA SER ARG GLU SEQRES 4 E 418 ALA ARG ALA ALA TYR ARG TRP MET ARG ALA ASN GLN PRO SEQRES 5 E 418 VAL PHE ARG ASP ARG ASN GLY LEU ALA ALA ALA SER THR SEQRES 6 E 418 TYR GLN ALA VAL ILE ASP ALA GLU ARG GLN PRO GLU LEU SEQRES 7 E 418 PHE SER ASN ALA GLY GLY ILE ARG PRO ASP GLN PRO ALA SEQRES 8 E 418 LEU PRO MET MET ILE ASP MET ASP ASP PRO ALA HIS LEU SEQRES 9 E 418 LEU ARG ARG LYS LEU VAL ASN ALA GLY PHE THR ARG LYS SEQRES 10 E 418 ARG VAL LYS ASP LYS GLU ALA SER ILE ALA ALA LEU CYS SEQRES 11 E 418 ASP THR LEU ILE ASP ALA VAL CYS GLU ARG GLY GLU CYS SEQRES 12 E 418 ASP PHE VAL ARG ASP LEU ALA ALA PRO LEU PRO MET ALA SEQRES 13 E 418 VAL ILE GLY ASP MET LEU GLY VAL ARG PRO GLU GLN ARG SEQRES 14 E 418 ASP MET PHE LEU ARG TRP SER ASP ASP LEU VAL THR PHE SEQRES 15 E 418 LEU SER SER HIS VAL SER GLN GLU ASP PHE GLN ILE THR SEQRES 16 E 418 MET ASP ALA PHE ALA ALA TYR ASN ASP PHE THR ARG ALA SEQRES 17 E 418 THR ILE ALA ALA ARG ARG ALA ASP PRO THR ASP ASP LEU SEQRES 18 E 418 VAL SER VAL LEU VAL SER SER GLU VAL ASP GLY GLU ARG SEQRES 19 E 418 LEU SER ASP ASP GLU LEU VAL MET GLU THR LEU LEU ILE SEQRES 20 E 418 LEU ILE GLY GLY ASP GLU THR THR ARG HIS THR LEU SER SEQRES 21 E 418 GLY GLY THR GLU GLN LEU LEU ARG ASN ARG ASP GLN TRP SEQRES 22 E 418 ASP LEU LEU GLN ARG ASP PRO SER LEU LEU PRO GLY ALA SEQRES 23 E 418 ILE GLU GLU MET LEU ARG TRP THR ALA PRO VAL LYS ASN SEQRES 24 E 418 MET CYS ARG VAL LEU THR ALA ASP THR GLU PHE HIS GLY SEQRES 25 E 418 THR ALA LEU CYS ALA GLY GLU LYS MET MET LEU LEU PHE SEQRES 26 E 418 GLU SER ALA ASN PHE ASP GLU ALA VAL PHE CYS GLU PRO SEQRES 27 E 418 GLU LYS PHE ASP VAL GLN ARG ASN PRO ASN SER HIS LEU SEQRES 28 E 418 ALA PHE GLY PHE GLY THR HIS PHE CYS LEU GLY ASN GLN SEQRES 29 E 418 LEU ALA ARG LEU GLU LEU SER LEU MET THR GLU ARG VAL SEQRES 30 E 418 LEU ARG ARG LEU PRO ASP LEU ARG LEU VAL ALA ASP ASP SEQRES 31 E 418 SER VAL LEU PRO LEU ARG PRO ALA ASN PHE VAL SER GLY SEQRES 32 E 418 LEU GLU SER MET PRO VAL VAL PHE THR PRO SER PRO PRO SEQRES 33 E 418 LEU GLY HET K2B B 401 72 HET HEM B 402 73 HET K2B E 401 72 HET HEM E 402 73 HETNAM K2B (8ALPHA,9BETA)-CHOLEST-4-EN-3-ONE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 K2B 2(C27 H44 O) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 7 HOH *502(H2 O) HELIX 1 AA1 ASP B 11 SER B 17 1 7 HELIX 2 AA2 GLU B 19 GLN B 31 1 13 HELIX 3 AA3 THR B 45 ARG B 54 1 10 HELIX 4 AA4 MET B 74 MET B 78 5 5 HELIX 5 AA5 PRO B 81 ASN B 91 1 11 HELIX 6 AA6 ALA B 92 PHE B 94 5 3 HELIX 7 AA7 THR B 95 ASP B 101 1 7 HELIX 8 AA8 LYS B 102 GLU B 119 1 18 HELIX 9 AA9 PHE B 125 LEU B 129 1 5 HELIX 10 AB1 ALA B 131 GLY B 143 1 13 HELIX 11 AB2 ARG B 145 GLU B 147 5 3 HELIX 12 AB3 GLN B 148 THR B 161 1 14 HELIX 13 AB4 SER B 168 ASP B 196 1 29 HELIX 14 AB5 ASP B 200 SER B 207 1 8 HELIX 15 AB6 SER B 216 GLU B 233 1 18 HELIX 16 AB7 THR B 234 ASN B 249 1 16 HELIX 17 AB8 ASN B 249 ASP B 259 1 11 HELIX 18 AB9 LEU B 262 ALA B 275 1 14 HELIX 19 AC1 PHE B 305 PHE B 310 1 6 HELIX 20 AC2 GLY B 342 LEU B 361 1 20 HELIX 21 AC3 ASP E 11 SER E 17 1 7 HELIX 22 AC4 GLU E 19 GLN E 31 1 13 HELIX 23 AC5 THR E 45 ARG E 54 1 10 HELIX 24 AC6 MET E 74 MET E 78 5 5 HELIX 25 AC7 PRO E 81 ASN E 91 1 11 HELIX 26 AC8 ALA E 92 PHE E 94 5 3 HELIX 27 AC9 THR E 95 ASP E 101 1 7 HELIX 28 AD1 LYS E 102 ALA E 116 1 15 HELIX 29 AD2 PHE E 125 LEU E 129 1 5 HELIX 30 AD3 ALA E 131 GLY E 143 1 13 HELIX 31 AD4 ARG E 145 GLU E 147 5 3 HELIX 32 AD5 GLN E 148 THR E 161 1 14 HELIX 33 AD6 SER E 168 ASP E 196 1 29 HELIX 34 AD7 ASP E 200 SER E 208 1 9 HELIX 35 AD8 SER E 216 GLU E 233 1 18 HELIX 36 AD9 THR E 234 ASN E 249 1 16 HELIX 37 AE1 ASN E 249 ASP E 259 1 11 HELIX 38 AE2 LEU E 262 ALA E 275 1 14 HELIX 39 AE3 PHE E 305 PHE E 310 1 6 HELIX 40 AE4 GLY E 342 LEU E 361 1 20 SHEET 1 AA1 5 VAL B 33 ARG B 35 0 SHEET 2 AA1 5 ALA B 41 ALA B 43 -1 O ALA B 42 N PHE B 34 SHEET 3 AA1 5 LYS B 300 LEU B 304 1 O MET B 302 N ALA B 43 SHEET 4 AA1 5 ASN B 279 LEU B 284 -1 N ARG B 282 O MET B 301 SHEET 5 AA1 5 PHE B 59 SER B 60 -1 N SER B 60 O VAL B 283 SHEET 1 AA2 3 GLU B 122 ASP B 124 0 SHEET 2 AA2 3 PRO B 388 VAL B 390 -1 O VAL B 389 N CYS B 123 SHEET 3 AA2 3 ARG B 365 LEU B 366 -1 N ARG B 365 O VAL B 390 SHEET 1 AA3 2 GLU B 209 VAL B 210 0 SHEET 2 AA3 2 GLU B 213 ARG B 214 -1 O GLU B 213 N VAL B 210 SHEET 1 AA4 2 THR B 288 PHE B 290 0 SHEET 2 AA4 2 THR B 293 LEU B 295 -1 O THR B 293 N PHE B 290 SHEET 1 AA5 5 VAL E 33 ARG E 35 0 SHEET 2 AA5 5 ALA E 41 ALA E 43 -1 O ALA E 42 N PHE E 34 SHEET 3 AA5 5 LYS E 300 LEU E 304 1 O MET E 302 N ALA E 43 SHEET 4 AA5 5 ASN E 279 LEU E 284 -1 N ARG E 282 O MET E 301 SHEET 5 AA5 5 PHE E 59 SER E 60 -1 N SER E 60 O VAL E 283 SHEET 1 AA6 3 GLU E 122 ASP E 124 0 SHEET 2 AA6 3 PRO E 388 VAL E 390 -1 O VAL E 389 N CYS E 123 SHEET 3 AA6 3 ARG E 365 LEU E 366 -1 N ARG E 365 O VAL E 390 SHEET 1 AA7 2 GLU E 209 VAL E 210 0 SHEET 2 AA7 2 GLU E 213 ARG E 214 -1 O GLU E 213 N VAL E 210 SHEET 1 AA8 2 THR E 288 PHE E 290 0 SHEET 2 AA8 2 THR E 293 LEU E 295 -1 O LEU E 295 N THR E 288 LINK SG CYS B 340 FE HEM B 402 1555 1555 2.40 LINK SG CYS E 340 FE HEM E 402 1555 1555 2.35 CISPEP 1 ASP B 80 PRO B 81 0 5.46 CISPEP 2 ASP B 211 GLY B 212 0 -16.37 CISPEP 3 ASN B 326 PRO B 327 0 0.73 CISPEP 4 ASP E 80 PRO E 81 0 4.53 CISPEP 5 ASN E 326 PRO E 327 0 2.24 CRYST1 65.810 128.130 146.600 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006821 0.00000