HEADER BIOSYNTHETIC PROTEIN 21-JUN-22 8A7J TITLE PCIDS1 IN COMPLEX WITH MN2+, IPP, AND ZOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEDON COCHLEARIAE; SOURCE 3 ORGANISM_COMMON: MUSTARD BEETLE; SOURCE 4 ORGANISM_TAXID: 80249; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INSECTS, BIOSYNTHESIS, TERPENES, METAL REGULATION, CATALYSIS, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.ECKER,W.BOLAND,M.GROLL REVDAT 4 07-FEB-24 8A7J 1 REMARK REVDAT 3 16-AUG-23 8A7J 1 JRNL REVDAT 2 21-JUN-23 8A7J 1 JRNL REVDAT 1 31-MAY-23 8A7J 0 JRNL AUTH F.ECKER,A.VATTEKKATTE,W.BOLAND,M.GROLL JRNL TITL METAL-DEPENDENT ENZYME SYMMETRY GUIDES THE BIOSYNTHETIC FLUX JRNL TITL 2 OF TERPENE PRECURSORS. JRNL REF NAT.CHEM. V. 15 1188 2023 JRNL REFN ESSN 1755-4349 JRNL PMID 37308711 JRNL DOI 10.1038/S41557-023-01235-9 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 218246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15941 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 839 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 739 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5894 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5468 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7980 ; 1.705 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12715 ; 1.613 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 5.055 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;35.007 ;22.147 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1068 ;12.267 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;16.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6503 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1257 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11362 ; 2.483 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8A7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 229848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8A6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 0.1 M NACL, 23%PEG REMARK 280 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.31500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 84 REMARK 465 GLY B 84 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 832 O HOH B 949 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 291 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET B 178 CG - SD - CE ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 107 51.56 -150.04 REMARK 500 VAL A 200 -83.00 -103.86 REMARK 500 THR A 277 -51.36 -133.69 REMARK 500 SER A 409 -135.99 -131.03 REMARK 500 ASP B 107 54.91 -146.10 REMARK 500 VAL B 200 -84.85 -108.68 REMARK 500 THR B 277 -52.55 -131.78 REMARK 500 SER B 409 141.02 -37.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD2 REMARK 620 2 ASP A 183 OD2 89.6 REMARK 620 3 ZOL A 506 O11 90.1 169.7 REMARK 620 4 ZOL A 506 O16 92.9 80.1 89.6 REMARK 620 5 HOH A 677 O 82.6 97.8 92.4 175.1 REMARK 620 6 HOH A 817 O 171.8 86.1 95.4 93.2 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 ASP A 183 OD2 90.2 REMARK 620 3 ZOL A 506 O16 91.8 78.8 REMARK 620 4 HOH A 621 O 86.2 91.0 169.7 REMARK 620 5 HOH A 636 O 88.6 176.1 97.4 92.7 REMARK 620 6 HOH A 695 O 175.4 94.0 90.9 91.8 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 319 OD2 REMARK 620 2 ZOL A 506 O15 99.4 REMARK 620 3 ZOL A 506 O10 91.6 91.6 REMARK 620 4 HOH A 631 O 170.6 87.1 95.0 REMARK 620 5 HOH A 671 O 88.1 90.8 177.6 85.0 REMARK 620 6 HOH A 777 O 87.5 173.1 87.9 86.1 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 OD1 REMARK 620 2 ASP B 183 OD2 90.4 REMARK 620 3 ZOL B 506 O15 92.0 80.0 REMARK 620 4 HOH B 624 O 89.0 174.9 95.0 REMARK 620 5 HOH B 625 O 85.7 92.2 171.8 92.8 REMARK 620 6 HOH B 752 O 175.2 94.0 90.6 86.8 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 OD2 REMARK 620 2 ASP B 183 OD2 88.7 REMARK 620 3 ZOL B 506 O15 91.1 79.2 REMARK 620 4 ZOL B 506 O12 92.2 169.8 90.6 REMARK 620 5 HOH B 690 O 83.7 99.0 174.5 91.2 REMARK 620 6 HOH B 837 O 173.2 86.3 92.6 93.6 92.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 319 OD2 REMARK 620 2 ZOL B 506 O17 98.6 REMARK 620 3 ZOL B 506 O11 90.6 90.2 REMARK 620 4 HOH B 627 O 170.8 88.4 95.3 REMARK 620 5 HOH B 651 O 88.1 91.7 177.8 85.8 REMARK 620 6 HOH B 816 O 87.1 174.2 88.9 86.0 89.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8A6U RELATED DB: PDB REMARK 900 PCIDS1 IN COMPLEX WITH MG2+ DBREF 8A7J A 86 429 UNP M1JS91 M1JS91_PHACE 86 429 DBREF 8A7J B 86 429 UNP M1JS91 M1JS91_PHACE 86 429 SEQADV 8A7J GLY A 84 UNP M1JS91 EXPRESSION TAG SEQADV 8A7J SER A 85 UNP M1JS91 EXPRESSION TAG SEQADV 8A7J GLY B 84 UNP M1JS91 EXPRESSION TAG SEQADV 8A7J SER B 85 UNP M1JS91 EXPRESSION TAG SEQRES 1 A 346 GLY SER PHE SER LYS GLU GLU SER ARG GLU PHE MET ALA SEQRES 2 A 346 ILE PHE PRO ASP ILE VAL ARG ASP LEU THR ASP ALA GLY SEQRES 3 A 346 ARG HIS THR ASP ILE PRO GLU VAL THR LYS ARG PHE ALA SEQRES 4 A 346 LYS VAL LEU GLN TYR ASN VAL PRO THR GLY LYS LYS THR SEQRES 5 A 346 ARG GLY LEU SER THR VAL ILE ALA TYR LYS MET LEU GLU SEQRES 6 A 346 LYS PRO GLU ASN LEU THR PRO GLU ASN VAL ARG LEU ALA SEQRES 7 A 346 GLY ILE LEU GLY TRP CYS VAL GLU LEU LEU GLN ALA SER SEQRES 8 A 346 LEU LEU ILE MET ASP ASP LEU MET ASP ARG SER GLU THR SEQRES 9 A 346 ARG ARG GLY GLN PRO CYS TRP TYR ARG GLN GLU ASN VAL SEQRES 10 A 346 GLY PHE LEU ALA ILE ASN ASP CYS LEU HIS VAL GLU SER SEQRES 11 A 346 SER LEU TYR SER VAL LEU ARG LYS TYR PHE SER HIS LEU SEQRES 12 A 346 PRO CYS TYR VAL PRO ILE ILE GLU LEU PHE HIS ASP VAL SEQRES 13 A 346 ASN PHE LYS THR ASN MET GLY GLN SER LEU ASP ALA LEU SEQRES 14 A 346 CYS MET LYS ASP GLY ARG PRO ILE LEU SER GLN PHE THR SEQRES 15 A 346 MET LYS ARG TYR SER SER ILE VAL LYS TYR LYS THR SER SEQRES 16 A 346 TYR TYR THR PHE GLN LEU PRO VAL SER LEU GLY MET TYR SEQRES 17 A 346 LEU ALA ASP MET TYR ASP PRO GLU GLN HIS ARG GLN ALA SEQRES 18 A 346 LYS THR ILE LEU MET GLU ILE GLY GLU PHE PHE GLN ILE SEQRES 19 A 346 GLN ASP ASP PHE LEU ASP ALA PHE GLY ASP SER GLN VAL SEQRES 20 A 346 THR GLY LYS VAL GLY THR ASP ILE LYS GLU GLY LYS CYS SEQRES 21 A 346 SER TRP LEU ALA VAL VAL ALA LEU GLN ARG SER ASN PRO SEQRES 22 A 346 ALA GLN ARG GLN ILE MET GLU GLU HIS TYR GLY ARG PRO SEQRES 23 A 346 GLU PRO GLU SER THR GLN ILE ILE LYS ASN LEU TYR ILE SEQRES 24 A 346 GLU LEU GLY LEU PRO ALA THR PHE ALA VAL TYR GLU GLU SEQRES 25 A 346 GLU SER PHE ASN ILE ILE ARG THR HIS ILE HIS GLN ILE SEQRES 26 A 346 SER LYS GLY LEU PRO HIS ASP LEU PHE PHE LYS ILE MET SEQRES 27 A 346 LYS LYS ILE TYR LYS ARG ASP ALA SEQRES 1 B 346 GLY SER PHE SER LYS GLU GLU SER ARG GLU PHE MET ALA SEQRES 2 B 346 ILE PHE PRO ASP ILE VAL ARG ASP LEU THR ASP ALA GLY SEQRES 3 B 346 ARG HIS THR ASP ILE PRO GLU VAL THR LYS ARG PHE ALA SEQRES 4 B 346 LYS VAL LEU GLN TYR ASN VAL PRO THR GLY LYS LYS THR SEQRES 5 B 346 ARG GLY LEU SER THR VAL ILE ALA TYR LYS MET LEU GLU SEQRES 6 B 346 LYS PRO GLU ASN LEU THR PRO GLU ASN VAL ARG LEU ALA SEQRES 7 B 346 GLY ILE LEU GLY TRP CYS VAL GLU LEU LEU GLN ALA SER SEQRES 8 B 346 LEU LEU ILE MET ASP ASP LEU MET ASP ARG SER GLU THR SEQRES 9 B 346 ARG ARG GLY GLN PRO CYS TRP TYR ARG GLN GLU ASN VAL SEQRES 10 B 346 GLY PHE LEU ALA ILE ASN ASP CYS LEU HIS VAL GLU SER SEQRES 11 B 346 SER LEU TYR SER VAL LEU ARG LYS TYR PHE SER HIS LEU SEQRES 12 B 346 PRO CYS TYR VAL PRO ILE ILE GLU LEU PHE HIS ASP VAL SEQRES 13 B 346 ASN PHE LYS THR ASN MET GLY GLN SER LEU ASP ALA LEU SEQRES 14 B 346 CYS MET LYS ASP GLY ARG PRO ILE LEU SER GLN PHE THR SEQRES 15 B 346 MET LYS ARG TYR SER SER ILE VAL LYS TYR LYS THR SER SEQRES 16 B 346 TYR TYR THR PHE GLN LEU PRO VAL SER LEU GLY MET TYR SEQRES 17 B 346 LEU ALA ASP MET TYR ASP PRO GLU GLN HIS ARG GLN ALA SEQRES 18 B 346 LYS THR ILE LEU MET GLU ILE GLY GLU PHE PHE GLN ILE SEQRES 19 B 346 GLN ASP ASP PHE LEU ASP ALA PHE GLY ASP SER GLN VAL SEQRES 20 B 346 THR GLY LYS VAL GLY THR ASP ILE LYS GLU GLY LYS CYS SEQRES 21 B 346 SER TRP LEU ALA VAL VAL ALA LEU GLN ARG SER ASN PRO SEQRES 22 B 346 ALA GLN ARG GLN ILE MET GLU GLU HIS TYR GLY ARG PRO SEQRES 23 B 346 GLU PRO GLU SER THR GLN ILE ILE LYS ASN LEU TYR ILE SEQRES 24 B 346 GLU LEU GLY LEU PRO ALA THR PHE ALA VAL TYR GLU GLU SEQRES 25 B 346 GLU SER PHE ASN ILE ILE ARG THR HIS ILE HIS GLN ILE SEQRES 26 B 346 SER LYS GLY LEU PRO HIS ASP LEU PHE PHE LYS ILE MET SEQRES 27 B 346 LYS LYS ILE TYR LYS ARG ASP ALA HET MN A 501 1 HET MN A 502 1 HET MN A 503 1 HET GOL A 504 6 HET IPE A 505 14 HET ZOL A 506 16 HET MN B 501 1 HET MN B 502 1 HET MN B 503 1 HET GOL B 504 6 HET IPE B 505 14 HET ZOL B 506 16 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM ZOL ZOLEDRONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN ZOL (1-HYDROXY-2-IMIDAZOL-1-YLETHYLIDENE)DIPHOSPHONIC ACID FORMUL 3 MN 6(MN 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 IPE 2(C5 H12 O7 P2) FORMUL 8 ZOL 2(C5 H10 N2 O7 P2) FORMUL 15 HOH *739(H2 O) HELIX 1 AA1 SER A 87 ASP A 107 1 21 HELIX 2 AA2 ILE A 114 VAL A 129 1 16 HELIX 3 AA3 LYS A 134 GLU A 148 1 15 HELIX 4 AA4 LYS A 149 LEU A 153 5 5 HELIX 5 AA5 THR A 154 ARG A 184 1 31 HELIX 6 AA6 TRP A 194 GLN A 197 5 4 HELIX 7 AA7 PHE A 202 SER A 224 1 23 HELIX 8 AA8 CYS A 228 LEU A 252 1 25 HELIX 9 AA9 LEU A 261 PHE A 264 5 4 HELIX 10 AB1 THR A 265 THR A 277 1 13 HELIX 11 AB2 THR A 277 PHE A 282 1 6 HELIX 12 AB3 PHE A 282 ALA A 293 1 12 HELIX 13 AB4 ASP A 297 GLY A 326 1 30 HELIX 14 AB5 ASP A 327 GLY A 332 1 6 HELIX 15 AB6 THR A 336 GLY A 341 1 6 HELIX 16 AB7 SER A 344 SER A 354 1 11 HELIX 17 AB8 ASN A 355 TYR A 366 1 12 HELIX 18 AB9 GLU A 370 LEU A 384 1 15 HELIX 19 AC1 GLY A 385 GLN A 407 1 23 HELIX 20 AC2 PRO A 413 TYR A 425 1 13 HELIX 21 AC3 SER B 87 ALA B 96 1 10 HELIX 22 AC4 ILE B 97 ASP B 107 1 11 HELIX 23 AC5 ILE B 114 VAL B 129 1 16 HELIX 24 AC6 LYS B 134 GLU B 148 1 15 HELIX 25 AC7 LYS B 149 LEU B 153 5 5 HELIX 26 AC8 THR B 154 ARG B 184 1 31 HELIX 27 AC9 TRP B 194 GLN B 197 5 4 HELIX 28 AD1 PHE B 202 SER B 224 1 23 HELIX 29 AD2 CYS B 228 LEU B 252 1 25 HELIX 30 AD3 LEU B 261 PHE B 264 5 4 HELIX 31 AD4 THR B 265 THR B 277 1 13 HELIX 32 AD5 THR B 277 PHE B 282 1 6 HELIX 33 AD6 PHE B 282 ALA B 293 1 12 HELIX 34 AD7 ASP B 297 GLY B 326 1 30 HELIX 35 AD8 ASP B 327 GLY B 332 1 6 HELIX 36 AD9 THR B 336 GLY B 341 1 6 HELIX 37 AE1 SER B 344 SER B 354 1 11 HELIX 38 AE2 ASN B 355 TYR B 366 1 12 HELIX 39 AE3 GLU B 370 LEU B 384 1 15 HELIX 40 AE4 GLY B 385 GLN B 407 1 23 HELIX 41 AE5 PRO B 413 LYS B 426 1 14 SHEET 1 AA1 2 THR A 187 ARG A 188 0 SHEET 2 AA1 2 GLN A 191 PRO A 192 -1 O GLN A 191 N ARG A 188 SHEET 1 AA2 2 MET A 254 LYS A 255 0 SHEET 2 AA2 2 ARG A 258 PRO A 259 -1 O ARG A 258 N LYS A 255 SHEET 1 AA3 2 THR B 187 ARG B 188 0 SHEET 2 AA3 2 GLN B 191 PRO B 192 -1 O GLN B 191 N ARG B 188 SHEET 1 AA4 2 MET B 254 LYS B 255 0 SHEET 2 AA4 2 ARG B 258 PRO B 259 -1 O ARG B 258 N LYS B 255 LINK OD2 ASP A 179 MN MN A 501 1555 1555 2.04 LINK OD1 ASP A 179 MN MN A 502 1555 1555 2.09 LINK OD2 ASP A 183 MN MN A 501 1555 1555 2.17 LINK OD2 ASP A 183 MN MN A 502 1555 1555 2.19 LINK OD2 ASP A 319 MN MN A 503 1555 1555 2.15 LINK MN MN A 501 O11 ZOL A 506 1555 1555 2.04 LINK MN MN A 501 O16 ZOL A 506 1555 1555 2.11 LINK MN MN A 501 O HOH A 677 1555 1555 2.07 LINK MN MN A 501 O HOH A 817 1555 1555 2.08 LINK MN MN A 502 O16 ZOL A 506 1555 1555 2.15 LINK MN MN A 502 O HOH A 621 1555 1555 2.10 LINK MN MN A 502 O HOH A 636 1555 1555 2.09 LINK MN MN A 502 O HOH A 695 1555 1555 2.13 LINK MN MN A 503 O15 ZOL A 506 1555 1555 2.08 LINK MN MN A 503 O10 ZOL A 506 1555 1555 2.00 LINK MN MN A 503 O HOH A 631 1555 1555 2.17 LINK MN MN A 503 O HOH A 671 1555 1555 2.08 LINK MN MN A 503 O HOH A 777 1555 1555 2.15 LINK OD1 ASP B 179 MN MN B 501 1555 1555 2.08 LINK OD2 ASP B 179 MN MN B 503 1555 1555 2.05 LINK OD2 ASP B 183 MN MN B 501 1555 1555 2.14 LINK OD2 ASP B 183 MN MN B 503 1555 1555 2.16 LINK OD2 ASP B 319 MN MN B 502 1555 1555 2.11 LINK MN MN B 501 O15 ZOL B 506 1555 1555 2.13 LINK MN MN B 501 O HOH B 624 1555 1555 2.11 LINK MN MN B 501 O HOH B 625 1555 1555 2.10 LINK MN MN B 501 O HOH B 752 1555 1555 2.12 LINK MN MN B 502 O17 ZOL B 506 1555 1555 2.10 LINK MN MN B 502 O11 ZOL B 506 1555 1555 1.98 LINK MN MN B 502 O HOH B 627 1555 1555 2.15 LINK MN MN B 502 O HOH B 651 1555 1555 2.05 LINK MN MN B 502 O HOH B 816 1555 1555 2.12 LINK MN MN B 503 O15 ZOL B 506 1555 1555 2.15 LINK MN MN B 503 O12 ZOL B 506 1555 1555 2.03 LINK MN MN B 503 O HOH B 690 1555 1555 2.07 LINK MN MN B 503 O HOH B 837 1555 1555 2.12 CRYST1 57.830 70.630 94.090 90.00 91.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017292 0.000000 0.000431 0.00000 SCALE2 0.000000 0.014158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010631 0.00000