HEADER BIOSYNTHETIC PROTEIN 21-JUN-22 8A7L TITLE PCIDS1 IN COMPLEX WITH MG2+, GPP, AND ZOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEDON COCHLEARIAE; SOURCE 3 ORGANISM_COMMON: MUSTARD BEETLE; SOURCE 4 ORGANISM_TAXID: 80249; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INSECTS, BIOSYNTHESIS, TERPENES, METAL REGULATION, CATALYSIS, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.ECKER,W.BOLAND,M.GROLL REVDAT 4 07-FEB-24 8A7L 1 REMARK REVDAT 3 16-AUG-23 8A7L 1 JRNL REVDAT 2 21-JUN-23 8A7L 1 JRNL REVDAT 1 31-MAY-23 8A7L 0 JRNL AUTH F.ECKER,A.VATTEKKATTE,W.BOLAND,M.GROLL JRNL TITL METAL-DEPENDENT ENZYME SYMMETRY GUIDES THE BIOSYNTHETIC FLUX JRNL TITL 2 OF TERPENE PRECURSORS. JRNL REF NAT.CHEM. V. 15 1188 2023 JRNL REFN ESSN 1755-4349 JRNL PMID 37308711 JRNL DOI 10.1038/S41557-023-01235-9 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 40913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 2.15000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.054 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2933 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2730 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3968 ; 1.225 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6345 ; 1.246 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 351 ; 5.160 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;34.887 ;21.975 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;12.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3230 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 624 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5655 ; 0.882 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): -32.6212 36.4606 26.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.1131 REMARK 3 T33: 0.0140 T12: -0.0212 REMARK 3 T13: -0.0038 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.0905 L22: 1.0566 REMARK 3 L33: 2.2228 L12: -0.3370 REMARK 3 L13: 0.4051 L23: -0.8336 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.1434 S13: 0.0072 REMARK 3 S21: -0.0062 S22: -0.0952 S23: 0.0660 REMARK 3 S31: -0.0321 S32: -0.0520 S33: 0.0701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8A7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8A6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 45% PEG 400, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.74000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.87000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.87000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.74000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 200 -79.37 -107.91 REMARK 500 LEU A 252 31.51 -87.35 REMARK 500 THR A 277 -52.12 -133.27 REMARK 500 PHE A 282 -50.71 -120.23 REMARK 500 SER A 409 -145.60 -119.94 REMARK 500 LYS A 410 -157.25 51.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD2 REMARK 620 2 ASP A 183 OD2 84.7 REMARK 620 3 ZOL A 505 O16 90.1 78.4 REMARK 620 4 ZOL A 505 O11 93.3 171.2 93.1 REMARK 620 5 HOH A 618 O 85.7 95.2 172.6 93.2 REMARK 620 6 HOH A 737 O 170.5 87.4 93.3 95.4 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 ASP A 183 OD2 89.2 REMARK 620 3 ZOL A 505 O16 93.9 81.8 REMARK 620 4 HOH A 606 O 88.3 177.4 98.6 REMARK 620 5 HOH A 607 O 87.4 91.3 173.0 88.3 REMARK 620 6 HOH A 693 O 173.9 96.3 89.5 86.2 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 319 OD2 REMARK 620 2 ZOL A 505 O12 92.1 REMARK 620 3 ZOL A 505 O15 94.8 92.0 REMARK 620 4 HOH A 613 O 89.4 177.8 89.4 REMARK 620 5 HOH A 616 O 172.2 94.9 88.2 83.4 REMARK 620 6 HOH A 692 O 87.5 85.3 176.6 93.2 89.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8A6U RELATED DB: PDB REMARK 900 PCIDS1 IN COMPLEX WITH MG2+ DBREF 8A7L A 86 429 UNP M1JS91 M1JS91_PHACE 86 429 SEQADV 8A7L GLY A 84 UNP M1JS91 EXPRESSION TAG SEQADV 8A7L SER A 85 UNP M1JS91 EXPRESSION TAG SEQRES 1 A 346 GLY SER PHE SER LYS GLU GLU SER ARG GLU PHE MET ALA SEQRES 2 A 346 ILE PHE PRO ASP ILE VAL ARG ASP LEU THR ASP ALA GLY SEQRES 3 A 346 ARG HIS THR ASP ILE PRO GLU VAL THR LYS ARG PHE ALA SEQRES 4 A 346 LYS VAL LEU GLN TYR ASN VAL PRO THR GLY LYS LYS THR SEQRES 5 A 346 ARG GLY LEU SER THR VAL ILE ALA TYR LYS MET LEU GLU SEQRES 6 A 346 LYS PRO GLU ASN LEU THR PRO GLU ASN VAL ARG LEU ALA SEQRES 7 A 346 GLY ILE LEU GLY TRP CYS VAL GLU LEU LEU GLN ALA SER SEQRES 8 A 346 LEU LEU ILE MET ASP ASP LEU MET ASP ARG SER GLU THR SEQRES 9 A 346 ARG ARG GLY GLN PRO CYS TRP TYR ARG GLN GLU ASN VAL SEQRES 10 A 346 GLY PHE LEU ALA ILE ASN ASP CYS LEU HIS VAL GLU SER SEQRES 11 A 346 SER LEU TYR SER VAL LEU ARG LYS TYR PHE SER HIS LEU SEQRES 12 A 346 PRO CYS TYR VAL PRO ILE ILE GLU LEU PHE HIS ASP VAL SEQRES 13 A 346 ASN PHE LYS THR ASN MET GLY GLN SER LEU ASP ALA LEU SEQRES 14 A 346 CYS MET LYS ASP GLY ARG PRO ILE LEU SER GLN PHE THR SEQRES 15 A 346 MET LYS ARG TYR SER SER ILE VAL LYS TYR LYS THR SER SEQRES 16 A 346 TYR TYR THR PHE GLN LEU PRO VAL SER LEU GLY MET TYR SEQRES 17 A 346 LEU ALA ASP MET TYR ASP PRO GLU GLN HIS ARG GLN ALA SEQRES 18 A 346 LYS THR ILE LEU MET GLU ILE GLY GLU PHE PHE GLN ILE SEQRES 19 A 346 GLN ASP ASP PHE LEU ASP ALA PHE GLY ASP SER GLN VAL SEQRES 20 A 346 THR GLY LYS VAL GLY THR ASP ILE LYS GLU GLY LYS CYS SEQRES 21 A 346 SER TRP LEU ALA VAL VAL ALA LEU GLN ARG SER ASN PRO SEQRES 22 A 346 ALA GLN ARG GLN ILE MET GLU GLU HIS TYR GLY ARG PRO SEQRES 23 A 346 GLU PRO GLU SER THR GLN ILE ILE LYS ASN LEU TYR ILE SEQRES 24 A 346 GLU LEU GLY LEU PRO ALA THR PHE ALA VAL TYR GLU GLU SEQRES 25 A 346 GLU SER PHE ASN ILE ILE ARG THR HIS ILE HIS GLN ILE SEQRES 26 A 346 SER LYS GLY LEU PRO HIS ASP LEU PHE PHE LYS ILE MET SEQRES 27 A 346 LYS LYS ILE TYR LYS ARG ASP ALA HET MG A 501 1 HET MG A 502 1 HET MG A 503 1 HET GOL A 504 6 HET ZOL A 505 16 HET GPP A 506 19 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ZOL ZOLEDRONIC ACID HETNAM GPP GERANYL DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN ZOL (1-HYDROXY-2-IMIDAZOL-1-YLETHYLIDENE)DIPHOSPHONIC ACID FORMUL 2 MG 3(MG 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 ZOL C5 H10 N2 O7 P2 FORMUL 7 GPP C10 H20 O7 P2 FORMUL 8 HOH *177(H2 O) HELIX 1 AA1 SER A 87 ALA A 96 1 10 HELIX 2 AA2 ILE A 97 THR A 106 1 10 HELIX 3 AA3 ILE A 114 VAL A 129 1 16 HELIX 4 AA4 LYS A 134 GLU A 148 1 15 HELIX 5 AA5 LYS A 149 LEU A 153 5 5 HELIX 6 AA6 THR A 154 ASP A 183 1 30 HELIX 7 AA7 TRP A 194 GLN A 197 5 4 HELIX 8 AA8 PHE A 202 SER A 224 1 23 HELIX 9 AA9 CYS A 228 LEU A 252 1 25 HELIX 10 AB1 LEU A 261 PHE A 264 5 4 HELIX 11 AB2 THR A 265 THR A 277 1 13 HELIX 12 AB3 THR A 277 PHE A 282 1 6 HELIX 13 AB4 PHE A 282 ALA A 293 1 12 HELIX 14 AB5 ASP A 297 GLY A 326 1 30 HELIX 15 AB6 ASP A 327 GLY A 332 1 6 HELIX 16 AB7 SER A 344 SER A 354 1 11 HELIX 17 AB8 ASN A 355 TYR A 366 1 12 HELIX 18 AB9 GLU A 370 LEU A 384 1 15 HELIX 19 AC1 GLY A 385 GLN A 407 1 23 HELIX 20 AC2 PRO A 413 TYR A 425 1 13 SHEET 1 AA1 2 THR A 187 ARG A 188 0 SHEET 2 AA1 2 GLN A 191 PRO A 192 -1 O GLN A 191 N ARG A 188 SHEET 1 AA2 2 MET A 254 LYS A 255 0 SHEET 2 AA2 2 ARG A 258 PRO A 259 -1 O ARG A 258 N LYS A 255 LINK OD2 ASP A 179 MG MG A 502 1555 1555 2.10 LINK OD1 ASP A 179 MG MG A 503 1555 1555 2.10 LINK OD2 ASP A 183 MG MG A 502 1555 1555 2.25 LINK OD2 ASP A 183 MG MG A 503 1555 1555 2.17 LINK OD2 ASP A 319 MG MG A 501 1555 1555 2.17 LINK MG MG A 501 O12 ZOL A 505 1555 1555 2.03 LINK MG MG A 501 O15 ZOL A 505 1555 1555 2.14 LINK MG MG A 501 O HOH A 613 1555 1555 2.16 LINK MG MG A 501 O HOH A 616 1555 1555 2.18 LINK MG MG A 501 O HOH A 692 1555 1555 2.19 LINK MG MG A 502 O16 ZOL A 505 1555 1555 2.15 LINK MG MG A 502 O11 ZOL A 505 1555 1555 2.00 LINK MG MG A 502 O HOH A 618 1555 1555 2.13 LINK MG MG A 502 O HOH A 737 1555 1555 2.06 LINK MG MG A 503 O16 ZOL A 505 1555 1555 2.08 LINK MG MG A 503 O HOH A 606 1555 1555 2.08 LINK MG MG A 503 O HOH A 607 1555 1555 2.11 LINK MG MG A 503 O HOH A 693 1555 1555 2.10 CRYST1 86.170 86.170 119.610 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011605 0.006700 0.000000 0.00000 SCALE2 0.000000 0.013400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008361 0.00000