HEADER VIRUS 29-JUN-22 8A9U TITLE FULL AAV3B-VP1KO VIRION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: 0; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FOR PXR3B-VP1KO, THE ATG START CODON OF VP1 WAS COMPND 6 CHANGED TO TGA, AND THE GAT CODON OF ASP4 WAS CHANGED TO GAC TO COMPND 7 REMOVE AN ALTERNATIVE ATG. THUS THIS SAMPLE ONLY HAS VP2 AND VP3. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: PRO10TM; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PXR3B KEYWDS ADENO-ASSOCIATED VIRUS, AAV, AAV3B, AAV SEROTYPE 3B, FULL, VP1KO, KEYWDS 2 VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR I.ARRIAGA,N.G.A.ABRESCIA REVDAT 2 23-NOV-22 8A9U 1 JRNL REVDAT 1 21-SEP-22 8A9U 0 JRNL AUTH I.ARRIAGA,A.NAVARRO,A.ETXABE,C.TRIGUEROS,R.J.SAMULSKI, JRNL AUTH 2 P.MOULLIER,A.FRANCOIS,N.G.A.ABRESCIA JRNL TITL CELLULAR AND STRUCTURAL CHARACTERIZATION OF VP1 AND VP2 JRNL TITL 2 KNOCKOUT MUTANTS OF AAV3B SEROTYPE AND IMPLICATIONS FOR AAV JRNL TITL 3 MANUFACTURING. JRNL REF HUM GENE THER V. 33 1142 2022 JRNL REFN ISSN 1557-7422 JRNL PMID 36082996 JRNL DOI 10.1089/HUM.2022.119 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, CTFFIND, PHENIX, PHENIX, REMARK 3 RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3KIC REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 340947 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8A9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123781. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS - 3 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : PARAMETERS: 2 SECONDS OF BLOT REMARK 245 TIME, -2 OFFSET VALUE, AFTER 45 REMARK 245 SECONDS OF INCUBATION. REMARK 245 QUANTIFOIL CU 300-MESH R1.2/1.3 REMARK 245 HOLEY-CARBON GRIDS WITH AN REMARK 245 EXTRA LAYER OF CARBON ON TOP REMARK 245 ADDED IN-HOUSE. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : FOR THE RECOMBINANT PRODUCTION REMARK 245 OF THE VP1KO VIRION, WE USED THE PRO10TM CELL LINE. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2384 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 92000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.502083 -0.310276 -0.807243 377.09971 REMARK 350 BIOMT2 2 -0.308458 0.807783 -0.502335 234.43374 REMARK 350 BIOMT3 2 0.807940 0.501214 0.309867 -144.59132 REMARK 350 BIOMT1 3 0.503163 0.310885 0.806336 -144.70053 REMARK 350 BIOMT2 3 0.307690 0.807462 -0.503321 90.93928 REMARK 350 BIOMT3 3 -0.807561 0.501354 0.310629 232.26243 REMARK 350 BIOMT1 4 0.501448 0.311775 -0.807060 231.59990 REMARK 350 BIOMT2 4 0.305732 0.808779 0.502399 -144.17006 REMARK 350 BIOMT3 4 0.809369 -0.498671 0.310241 88.21095 REMARK 350 BIOMT1 5 0.496883 -0.310493 0.810371 0.68476 REMARK 350 BIOMT2 5 -0.312286 0.807274 0.500786 0.95028 REMARK 350 BIOMT3 5 -0.809682 -0.501899 0.304158 468.91534 REMARK 350 BIOMT1 6 0.810897 -0.496570 0.309619 87.39476 REMARK 350 BIOMT2 6 -0.498949 -0.310235 0.809199 233.53177 REMARK 350 BIOMT3 6 -0.305770 -0.810662 -0.499332 610.60523 REMARK 350 BIOMT1 7 0.306662 0.809939 -0.499958 89.36391 REMARK 350 BIOMT2 7 0.810939 -0.497335 -0.308279 231.93368 REMARK 350 BIOMT3 7 -0.498333 -0.310898 -0.809325 611.38189 REMARK 350 BIOMT1 8 0.000174 0.999992 -0.004104 1.29356 REMARK 350 BIOMT2 8 0.003944 -0.004105 -0.999984 467.32268 REMARK 350 BIOMT3 8 -0.999992 0.000158 -0.003945 467.97687 REMARK 350 BIOMT1 9 0.306142 0.807889 0.503579 -144.36309 REMARK 350 BIOMT2 9 -0.809214 0.499473 -0.309353 377.93063 REMARK 350 BIOMT3 9 -0.501447 -0.312797 0.806665 235.57745 REMARK 350 BIOMT1 10 0.807348 0.501163 0.311488 -145.07743 REMARK 350 BIOMT2 10 -0.502153 0.306301 0.808716 90.43460 REMARK 350 BIOMT3 10 0.309890 -0.809330 0.498952 233.60343 REMARK 350 BIOMT1 11 0.810251 -0.496968 0.310670 87.44416 REMARK 350 BIOMT2 11 0.501400 0.313312 -0.806494 231.17618 REMARK 350 BIOMT3 11 0.303465 0.809233 0.503041 -144.18612 REMARK 350 BIOMT1 12 0.002440 -0.002783 -0.999993 467.13307 REMARK 350 BIOMT2 12 0.999997 -0.000158 0.002441 -0.75597 REMARK 350 BIOMT3 12 -0.000164 -0.999996 0.002782 465.93052 REMARK 350 BIOMT1 13 0.311794 -0.805564 -0.503836 466.44756 REMARK 350 BIOMT2 13 0.806625 0.504655 -0.307701 -1.36597 REMARK 350 BIOMT3 13 0.502136 -0.310467 0.807137 0.59347 REMARK 350 BIOMT1 14 0.310155 -0.810692 0.496571 234.59818 REMARK 350 BIOMT2 14 0.807082 0.500572 0.313124 -145.28412 REMARK 350 BIOMT3 14 -0.502417 0.303656 0.809550 91.14680 REMARK 350 BIOMT1 15 -0.000041 -0.999961 -0.008853 469.54105 REMARK 350 BIOMT2 15 0.003044 -0.008853 0.999956 2.04137 REMARK 350 BIOMT3 15 -0.999995 0.000014 0.003044 465.89418 REMARK 350 BIOMT1 16 0.315172 -0.804357 -0.503662 465.30475 REMARK 350 BIOMT2 16 -0.807387 -0.506185 0.303155 470.07327 REMARK 350 BIOMT3 16 -0.498791 0.311105 -0.808963 465.99616 REMARK 350 BIOMT1 17 0.496633 0.306309 0.812115 -143.69398 REMARK 350 BIOMT2 17 -0.310724 -0.810903 0.495869 379.67631 REMARK 350 BIOMT3 17 0.810436 -0.498609 -0.307544 232.08549 REMARK 350 BIOMT1 18 0.311384 0.806000 -0.503392 90.63230 REMARK 350 BIOMT2 18 -0.805822 0.504727 0.309680 231.20571 REMARK 350 BIOMT3 18 0.503678 0.309215 0.806656 -144.30714 REMARK 350 BIOMT1 19 -0.308777 -0.809012 -0.500157 610.95225 REMARK 350 BIOMT2 19 0.808514 -0.500222 0.309973 88.89799 REMARK 350 BIOMT3 19 -0.500961 -0.308671 0.808554 233.64861 REMARK 350 BIOMT1 20 -0.499542 -0.309715 -0.809033 611.18303 REMARK 350 BIOMT2 20 -0.305314 -0.811038 0.499000 377.87184 REMARK 350 BIOMT3 20 -0.810704 0.496281 0.310587 234.32831 REMARK 350 BIOMT1 21 -0.003077 -0.000842 -0.999995 467.68761 REMARK 350 BIOMT2 21 -0.999993 -0.002298 0.003079 466.64248 REMARK 350 BIOMT3 21 -0.002301 0.999997 -0.000835 0.73710 REMARK 350 BIOMT1 22 -0.305152 -0.808234 -0.503627 611.23139 REMARK 350 BIOMT2 22 -0.809220 0.498877 -0.310299 378.52114 REMARK 350 BIOMT3 22 0.502042 0.312857 -0.806272 230.94430 REMARK 350 BIOMT1 23 0.313408 -0.810536 0.494779 234.54875 REMARK 350 BIOMT2 23 -0.805219 -0.503023 -0.313992 612.70025 REMARK 350 BIOMT3 23 0.503387 -0.299998 -0.810310 374.65388 REMARK 350 BIOMT1 24 0.497287 -0.312506 0.809349 1.42418 REMARK 350 BIOMT2 24 0.315598 -0.803805 -0.504278 465.14774 REMARK 350 BIOMT3 24 0.808148 0.506200 -0.301095 -4.10855 REMARK 350 BIOMT1 25 0.000363 1.000000 -0.000056 -0.06090 REMARK 350 BIOMT2 25 -0.001734 0.000056 0.999998 0.42423 REMARK 350 BIOMT3 25 0.999998 -0.000363 0.001734 -0.42275 REMARK 350 BIOMT1 26 0.304244 0.807509 0.505337 -144.42630 REMARK 350 BIOMT2 26 0.810263 -0.498319 0.308466 88.58272 REMARK 350 BIOMT3 26 0.500908 0.315607 -0.805906 230.29271 REMARK 350 BIOMT1 27 -0.310097 0.810045 0.497661 0.68867 REMARK 350 BIOMT2 27 0.809601 0.499416 -0.308432 -0.14191 REMARK 350 BIOMT3 27 -0.498384 0.307262 -0.810681 467.51437 REMARK 350 BIOMT1 28 -0.501479 0.307049 -0.808851 467.65150 REMARK 350 BIOMT2 28 0.310821 -0.808548 -0.499640 466.16569 REMARK 350 BIOMT3 28 -0.807409 -0.501967 0.310032 466.78524 REMARK 350 BIOMT1 29 0.999994 -0.000461 0.003495 -0.90940 REMARK 350 BIOMT2 29 -0.000411 -0.999898 -0.014306 471.28566 REMARK 350 BIOMT3 29 0.003501 0.014304 -0.999892 461.82546 REMARK 350 BIOMT1 30 0.809280 -0.495009 -0.316277 234.09180 REMARK 350 BIOMT2 30 0.500774 0.299921 0.811956 -142.60130 REMARK 350 BIOMT3 30 -0.307068 -0.815483 0.490608 382.10917 REMARK 350 BIOMT1 31 0.495790 -0.313070 -0.810049 379.93686 REMARK 350 BIOMT2 31 0.313006 -0.805651 0.502945 230.78598 REMARK 350 BIOMT3 31 -0.810074 -0.502905 -0.301441 609.81675 REMARK 350 BIOMT1 32 0.502117 0.312279 -0.806449 231.34201 REMARK 350 BIOMT2 32 -0.305217 -0.808526 -0.503119 611.13963 REMARK 350 BIOMT3 32 -0.809149 0.498766 -0.310661 378.64575 REMARK 350 BIOMT1 33 0.808514 0.501779 -0.307446 -0.95177 REMARK 350 BIOMT2 33 -0.499384 0.308638 -0.809542 466.88523 REMARK 350 BIOMT3 33 -0.311322 0.808060 0.500118 0.78117 REMARK 350 BIOMT1 34 0.806554 0.502943 -0.310675 0.19970 REMARK 350 BIOMT2 34 0.503514 -0.309096 0.806804 0.04424 REMARK 350 BIOMT3 34 0.309748 -0.807160 -0.502542 466.87870 REMARK 350 BIOMT1 35 0.808277 0.501155 0.309084 -144.46884 REMARK 350 BIOMT2 35 0.500274 -0.307694 -0.809352 377.41470 REMARK 350 BIOMT3 35 -0.310507 0.808807 -0.499416 233.57789 REMARK 350 BIOMT1 36 0.813322 -0.491865 -0.310766 230.56837 REMARK 350 BIOMT2 36 -0.496274 -0.307704 -0.811807 610.70138 REMARK 350 BIOMT3 36 0.303676 0.814486 -0.494362 86.83767 REMARK 350 BIOMT1 37 -0.309591 0.807401 -0.502252 234.74720 REMARK 350 BIOMT2 37 -0.805469 -0.503398 -0.312746 612.50830 REMARK 350 BIOMT3 37 -0.505344 0.307725 0.806184 91.35735 REMARK 350 BIOMT1 38 -0.500124 0.305470 -0.810286 468.23743 REMARK 350 BIOMT2 38 -0.314536 0.807727 0.498643 1.91888 REMARK 350 BIOMT3 38 0.806811 0.504247 -0.307882 -1.08722 REMARK 350 BIOMT1 39 -0.306858 0.807501 -0.503766 234.62679 REMARK 350 BIOMT2 39 0.809626 0.499727 0.307861 -143.94219 REMARK 350 BIOMT3 39 0.500343 -0.313392 -0.807120 378.29677 REMARK 350 BIOMT1 40 -0.497794 -0.308782 -0.810466 610.95667 REMARK 350 BIOMT2 40 0.306755 0.811389 -0.497544 88.18556 REMARK 350 BIOMT3 40 0.811235 -0.496289 -0.309184 231.84934 REMARK 350 BIOMT1 41 0.004847 -0.999974 -0.005367 467.38778 REMARK 350 BIOMT2 41 0.003445 0.005384 -0.999980 464.52163 REMARK 350 BIOMT3 41 0.999982 0.004829 0.003471 -2.52386 REMARK 350 BIOMT1 42 -0.005014 -0.008194 0.999954 3.38466 REMARK 350 BIOMT2 42 0.999974 0.005110 0.005055 -3.10174 REMARK 350 BIOMT3 42 -0.005151 0.999953 0.008168 -1.48403 REMARK 350 BIOMT1 43 -0.501576 -0.316028 0.805325 236.95090 REMARK 350 BIOMT2 43 0.302897 0.807815 0.505657 -144.30465 REMARK 350 BIOMT3 43 -0.810355 0.497556 -0.309457 378.85667 REMARK 350 BIOMT1 44 -0.309322 -0.811852 0.495193 379.90092 REMARK 350 BIOMT2 44 -0.811048 0.497105 0.308364 234.90070 REMARK 350 BIOMT3 44 -0.496509 -0.306242 -0.812216 610.60191 REMARK 350 BIOMT1 45 -0.504847 0.310586 0.805398 90.77621 REMARK 350 BIOMT2 45 -0.307241 0.807274 -0.503896 234.74742 REMARK 350 BIOMT3 45 -0.806680 -0.501842 -0.312125 612.08673 REMARK 350 BIOMT1 46 -0.002294 -0.007024 0.999973 2.57843 REMARK 350 BIOMT2 46 -0.999993 -0.002974 -0.002315 468.51624 REMARK 350 BIOMT3 46 0.002990 -0.999971 -0.007017 468.28837 REMARK 350 BIOMT1 47 -0.807903 0.500423 -0.311238 378.06232 REMARK 350 BIOMT2 47 0.502660 0.309486 -0.807187 232.18738 REMARK 350 BIOMT3 47 -0.307611 -0.808576 -0.501578 611.08581 REMARK 350 BIOMT1 48 -0.809117 0.499829 0.309033 233.49084 REMARK 350 BIOMT2 48 -0.498812 -0.306147 -0.810839 610.56304 REMARK 350 BIOMT3 48 -0.310671 -0.810213 0.497029 379.33545 REMARK 350 BIOMT1 49 -0.309157 0.809517 0.499104 0.08856 REMARK 350 BIOMT2 49 -0.809372 -0.499525 0.308855 466.80805 REMARK 350 BIOMT3 49 0.499339 -0.308475 0.809632 -0.14859 REMARK 350 BIOMT1 50 -0.808353 -0.501432 -0.308433 611.14429 REMARK 350 BIOMT2 50 0.499729 -0.307526 -0.809752 377.44774 REMARK 350 BIOMT3 50 0.311185 -0.808699 0.499170 233.18518 REMARK 350 BIOMT1 51 -0.303759 -0.815895 0.491981 381.01230 REMARK 350 BIOMT2 51 0.815238 -0.489821 -0.308969 228.93978 REMARK 350 BIOMT3 51 0.493069 0.307230 0.813936 -143.80499 REMARK 350 BIOMT1 52 -0.809916 -0.499652 0.307221 467.33719 REMARK 350 BIOMT2 52 0.498410 -0.310120 0.809576 0.45345 REMARK 350 BIOMT3 52 -0.309231 0.808810 0.500203 0.20955 REMARK 350 BIOMT1 53 -0.808573 -0.501351 -0.307990 611.05482 REMARK 350 BIOMT2 53 -0.499556 0.308361 0.809541 89.17442 REMARK 350 BIOMT3 53 -0.310892 0.808431 -0.499785 233.90047 REMARK 350 BIOMT1 54 -0.999997 -0.002178 0.001014 467.25782 REMARK 350 BIOMT2 54 0.002177 -0.999997 -0.001398 466.91649 REMARK 350 BIOMT3 54 0.001017 -0.001396 0.999999 0.14595 REMARK 350 BIOMT1 55 -0.808586 0.499004 -0.311743 378.66943 REMARK 350 BIOMT2 55 -0.503431 -0.312515 0.805538 236.11326 REMARK 350 BIOMT3 55 0.304542 0.808288 0.503909 -144.37184 REMARK 350 BIOMT1 56 -0.500814 0.306660 0.809410 89.97912 REMARK 350 BIOMT2 56 0.311263 -0.808769 0.499008 233.10582 REMARK 350 BIOMT3 56 0.807651 0.501849 0.309591 -144.65654 REMARK 350 BIOMT1 57 -0.809889 0.500054 0.306636 234.31172 REMARK 350 BIOMT2 57 0.497464 0.308527 0.810766 -144.20149 REMARK 350 BIOMT3 57 0.310821 0.809171 -0.498631 88.36391 REMARK 350 BIOMT1 58 -0.806441 -0.504717 0.308079 468.04011 REMARK 350 BIOMT2 58 -0.501363 0.307396 -0.808791 467.46722 REMARK 350 BIOMT3 58 0.313509 -0.806702 -0.500943 465.61283 REMARK 350 BIOMT1 59 -0.501107 -0.311712 0.807296 235.00364 REMARK 350 BIOMT2 59 -0.305232 -0.809256 -0.501933 610.87208 REMARK 350 BIOMT3 59 0.809768 -0.497935 0.310379 87.83519 REMARK 350 BIOMT1 60 -0.999995 -0.001212 -0.003054 468.16521 REMARK 350 BIOMT2 60 -0.001229 0.999984 0.005578 -1.41268 REMARK 350 BIOMT3 60 0.003047 0.005582 -0.999980 464.48953 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR 0 138 REMARK 465 ALA 0 139 REMARK 465 PRO 0 140 REMARK 465 GLY 0 141 REMARK 465 LYS 0 142 REMARK 465 LYS 0 143 REMARK 465 ARG 0 144 REMARK 465 PRO 0 145 REMARK 465 VAL 0 146 REMARK 465 ASP 0 147 REMARK 465 GLN 0 148 REMARK 465 SER 0 149 REMARK 465 PRO 0 150 REMARK 465 GLN 0 151 REMARK 465 GLU 0 152 REMARK 465 PRO 0 153 REMARK 465 ASP 0 154 REMARK 465 SER 0 155 REMARK 465 SER 0 156 REMARK 465 SER 0 157 REMARK 465 GLY 0 158 REMARK 465 VAL 0 159 REMARK 465 GLY 0 160 REMARK 465 LYS 0 161 REMARK 465 SER 0 162 REMARK 465 GLY 0 163 REMARK 465 LYS 0 164 REMARK 465 GLN 0 165 REMARK 465 PRO 0 166 REMARK 465 ALA 0 167 REMARK 465 ARG 0 168 REMARK 465 LYS 0 169 REMARK 465 ARG 0 170 REMARK 465 LEU 0 171 REMARK 465 ASN 0 172 REMARK 465 PHE 0 173 REMARK 465 GLY 0 174 REMARK 465 GLN 0 175 REMARK 465 THR 0 176 REMARK 465 GLY 0 177 REMARK 465 ASP 0 178 REMARK 465 SER 0 179 REMARK 465 GLU 0 180 REMARK 465 SER 0 181 REMARK 465 VAL 0 182 REMARK 465 PRO 0 183 REMARK 465 ASP 0 184 REMARK 465 PRO 0 185 REMARK 465 GLN 0 186 REMARK 465 PRO 0 187 REMARK 465 LEU 0 188 REMARK 465 GLY 0 189 REMARK 465 GLU 0 190 REMARK 465 PRO 0 191 REMARK 465 PRO 0 192 REMARK 465 ALA 0 193 REMARK 465 ALA 0 194 REMARK 465 PRO 0 195 REMARK 465 THR 0 196 REMARK 465 SER 0 197 REMARK 465 LEU 0 198 REMARK 465 GLY 0 199 REMARK 465 SER 0 200 REMARK 465 ASN 0 201 REMARK 465 THR 0 202 REMARK 465 MET 0 203 REMARK 465 ALA 0 204 REMARK 465 SER 0 205 REMARK 465 GLY 0 206 REMARK 465 GLY 0 207 REMARK 465 GLY 0 208 REMARK 465 ALA 0 209 REMARK 465 PRO 0 210 REMARK 465 MET 0 211 REMARK 465 ALA 0 212 REMARK 465 ASP 0 213 REMARK 465 ASN 0 214 REMARK 465 ASN 0 215 REMARK 465 GLU 0 216 REMARK 465 GLY 0 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU 0 563 OH TYR 0 613 2.05 REMARK 500 ND2 ASN 0 446 OG SER 0 464 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS 0 229 -63.92 -96.32 REMARK 500 CYS 0 230 -155.35 47.33 REMARK 500 ASP 0 231 177.32 67.60 REMARK 500 GLN 0 263 169.93 177.65 REMARK 500 PHE 0 284 33.09 -141.64 REMARK 500 ASN 0 285 53.16 -91.01 REMARK 500 ASP 0 327 -165.46 -162.27 REMARK 500 LEU 0 362 108.34 -57.15 REMARK 500 PRO 0 363 151.31 -47.45 REMARK 500 SER 0 423 54.33 -92.20 REMARK 500 ARG 0 460 115.73 -161.79 REMARK 500 TRP 0 503 -7.66 74.46 REMARK 500 GLU 0 531 -64.60 -93.63 REMARK 500 GLU 0 532 9.22 55.08 REMARK 500 PRO 0 631 6.86 -69.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15286 RELATED DB: EMDB REMARK 900 FULL AAV3B-VP1KO VIRION DBREF 8A9U 0 138 736 UNP O56139 O56139_9VIRU 138 736 SEQRES 1 0 599 THR ALA PRO GLY LYS LYS ARG PRO VAL ASP GLN SER PRO SEQRES 2 0 599 GLN GLU PRO ASP SER SER SER GLY VAL GLY LYS SER GLY SEQRES 3 0 599 LYS GLN PRO ALA ARG LYS ARG LEU ASN PHE GLY GLN THR SEQRES 4 0 599 GLY ASP SER GLU SER VAL PRO ASP PRO GLN PRO LEU GLY SEQRES 5 0 599 GLU PRO PRO ALA ALA PRO THR SER LEU GLY SER ASN THR SEQRES 6 0 599 MET ALA SER GLY GLY GLY ALA PRO MET ALA ASP ASN ASN SEQRES 7 0 599 GLU GLY ALA ASP GLY VAL GLY ASN SER SER GLY ASN TRP SEQRES 8 0 599 HIS CYS ASP SER GLN TRP LEU GLY ASP ARG VAL ILE THR SEQRES 9 0 599 THR SER THR ARG THR TRP ALA LEU PRO THR TYR ASN ASN SEQRES 10 0 599 HIS LEU TYR LYS GLN ILE SER SER GLN SER GLY ALA SER SEQRES 11 0 599 ASN ASP ASN HIS TYR PHE GLY TYR SER THR PRO TRP GLY SEQRES 12 0 599 TYR PHE ASP PHE ASN ARG PHE HIS CYS HIS PHE SER PRO SEQRES 13 0 599 ARG ASP TRP GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE SEQRES 14 0 599 ARG PRO LYS LYS LEU SER PHE LYS LEU PHE ASN ILE GLN SEQRES 15 0 599 VAL LYS GLU VAL THR GLN ASN ASP GLY THR THR THR ILE SEQRES 16 0 599 ALA ASN ASN LEU THR SER THR VAL GLN VAL PHE THR ASP SEQRES 17 0 599 SER GLU TYR GLN LEU PRO TYR VAL LEU GLY SER ALA HIS SEQRES 18 0 599 GLN GLY CYS LEU PRO PRO PHE PRO ALA ASP VAL PHE MET SEQRES 19 0 599 VAL PRO GLN TYR GLY TYR LEU THR LEU ASN ASN GLY SER SEQRES 20 0 599 GLN ALA VAL GLY ARG SER SER PHE TYR CYS LEU GLU TYR SEQRES 21 0 599 PHE PRO SER GLN MET LEU ARG THR GLY ASN ASN PHE GLN SEQRES 22 0 599 PHE SER TYR THR PHE GLU ASP VAL PRO PHE HIS SER SER SEQRES 23 0 599 TYR ALA HIS SER GLN SER LEU ASP ARG LEU MET ASN PRO SEQRES 24 0 599 LEU ILE ASP GLN TYR LEU TYR TYR LEU ASN ARG THR GLN SEQRES 25 0 599 GLY THR THR SER GLY THR THR ASN GLN SER ARG LEU LEU SEQRES 26 0 599 PHE SER GLN ALA GLY PRO GLN SER MET SER LEU GLN ALA SEQRES 27 0 599 ARG ASN TRP LEU PRO GLY PRO CYS TYR ARG GLN GLN ARG SEQRES 28 0 599 LEU SER LYS THR ALA ASN ASP ASN ASN ASN SER ASN PHE SEQRES 29 0 599 PRO TRP THR ALA ALA SER LYS TYR HIS LEU ASN GLY ARG SEQRES 30 0 599 ASP SER LEU VAL ASN PRO GLY PRO ALA MET ALA SER HIS SEQRES 31 0 599 LYS ASP ASP GLU GLU LYS PHE PHE PRO MET HIS GLY ASN SEQRES 32 0 599 LEU ILE PHE GLY LYS GLU GLY THR THR ALA SER ASN ALA SEQRES 33 0 599 GLU LEU ASP ASN VAL MET ILE THR ASP GLU GLU GLU ILE SEQRES 34 0 599 ARG THR THR ASN PRO VAL ALA THR GLU GLN TYR GLY THR SEQRES 35 0 599 VAL ALA ASN ASN LEU GLN SER SER ASN THR ALA PRO THR SEQRES 36 0 599 THR ARG THR VAL ASN ASP GLN GLY ALA LEU PRO GLY MET SEQRES 37 0 599 VAL TRP GLN ASP ARG ASP VAL TYR LEU GLN GLY PRO ILE SEQRES 38 0 599 TRP ALA LYS ILE PRO HIS THR ASP GLY HIS PHE HIS PRO SEQRES 39 0 599 SER PRO LEU MET GLY GLY PHE GLY LEU LYS HIS PRO PRO SEQRES 40 0 599 PRO GLN ILE MET ILE LYS ASN THR PRO VAL PRO ALA ASN SEQRES 41 0 599 PRO PRO THR THR PHE SER PRO ALA LYS PHE ALA SER PHE SEQRES 42 0 599 ILE THR GLN TYR SER THR GLY GLN VAL SER VAL GLU ILE SEQRES 43 0 599 GLU TRP GLU LEU GLN LYS GLU ASN SER LYS ARG TRP ASN SEQRES 44 0 599 PRO GLU ILE GLN TYR THR SER ASN TYR ASN LYS SER VAL SEQRES 45 0 599 ASN VAL ASP PHE THR VAL ASP THR ASN GLY VAL TYR SER SEQRES 46 0 599 GLU PRO ARG PRO ILE GLY THR ARG TYR LEU THR ARG ASN SEQRES 47 0 599 LEU HELIX 1 AA1 ARG 0 286 HIS 0 290 5 5 HELIX 2 AA2 SER 0 292 ASN 0 301 1 10 HELIX 3 AA3 CYS 0 394 PHE 0 398 5 5 HELIX 4 AA4 THR 0 492 ASN 0 496 5 5 HELIX 5 AA5 GLU 0 554 ASP 0 556 5 3 HELIX 6 AA6 GLU 0 563 ARG 0 567 5 5 SHEET 1 AA1 5 SER 0 232 TRP 0 234 0 SHEET 2 AA1 5 ARG 0 238 LEU 0 249 -1 O ILE 0 240 N GLN 0 233 SHEET 3 AA1 5 GLN 0 673 LYS 0 689 -1 O TRP 0 685 N VAL 0 239 SHEET 4 AA1 5 ASN 0 303 GLN 0 325 -1 N LYS 0 309 O GLU 0 684 SHEET 5 AA1 5 VAL 0 369 MET 0 371 0 SHEET 1 AA2 5 THR 0 330 ASN 0 334 0 SHEET 2 AA2 5 ASN 0 303 GLN 0 325 -1 N THR 0 324 O THR 0 331 SHEET 3 AA2 5 GLN 0 673 LYS 0 689 -1 O GLU 0 684 N LYS 0 309 SHEET 4 AA2 5 ARG 0 238 LEU 0 249 -1 N VAL 0 239 O TRP 0 685 SHEET 5 AA2 5 PHE 0 409 THR 0 414 0 SHEET 1 AA3 3 LYS 0 258 SER 0 261 0 SHEET 2 AA3 3 PHE 0 273 TYR 0 281 -1 O GLY 0 274 N ILE 0 260 SHEET 3 AA3 3 GLN 0 374 THR 0 379 -1 O TYR 0 375 N TRP 0 279 SHEET 1 AA4 5 LYS 0 258 SER 0 261 0 SHEET 2 AA4 5 PHE 0 273 TYR 0 281 -1 O GLY 0 274 N ILE 0 260 SHEET 3 AA4 5 ILE 0 647 ASN 0 651 -1 O ILE 0 649 N GLY 0 280 SHEET 4 AA4 5 VAL 0 340 THR 0 344 -1 N PHE 0 343 O MET 0 648 SHEET 5 AA4 5 GLN 0 401 LEU 0 403 -1 O GLN 0 401 N VAL 0 342 SHEET 1 AA5 2 ASN 0 381 ASN 0 382 0 SHEET 2 AA5 2 GLN 0 385 ALA 0 386 -1 O GLN 0 385 N ASN 0 382 SHEET 1 AA6 2 TYR 0 424 HIS 0 426 0 SHEET 2 AA6 2 LEU 0 732 ARG 0 734 1 O LEU 0 732 N ALA 0 425 SHEET 1 AA7 2 TYR 0 443 ARG 0 447 0 SHEET 2 AA7 2 LEU 0 462 GLN 0 465 -1 O SER 0 464 N TYR 0 444 SHEET 1 AA8 2 LEU 0 479 PRO 0 480 0 SHEET 2 AA8 2 MET 0 605 VAL 0 606 1 O VAL 0 606 N LEU 0 479 SHEET 1 AA9 2 CYS 0 483 TYR 0 484 0 SHEET 2 AA9 2 ASP 0 598 GLN 0 599 -1 O GLN 0 599 N CYS 0 483 SHEET 1 AB1 2 ARG 0 488 SER 0 490 0 SHEET 2 AB1 2 PHE 0 534 PRO 0 536 -1 O PHE 0 535 N LEU 0 489 SHEET 1 AB2 2 LYS 0 508 LEU 0 511 0 SHEET 2 AB2 2 ARG 0 514 LEU 0 517 -1 O ARG 0 514 N LEU 0 511 SHEET 1 AB3 2 ILE 0 542 GLY 0 544 0 SHEET 2 AB3 2 VAL 0 558 ILE 0 560 -1 O MET 0 559 N PHE 0 543 SHEET 1 AB4 2 GLY 0 578 ALA 0 581 0 SHEET 2 AB4 2 THR 0 593 VAL 0 596 -1 O VAL 0 596 N GLY 0 578 SHEET 1 AB5 2 TRP 0 619 LYS 0 621 0 SHEET 2 AB5 2 PHE 0 638 LEU 0 640 1 O LEU 0 640 N ALA 0 620 SSBOND 1 CYS 0 289 CYS 0 361 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000