HEADER STRUCTURAL PROTEIN 04-JUL-22 8AB1 TITLE CRYSTAL STRUCTURE OF THE PULL-PULM C-TERMINAL DOMAIN HETEROCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II SECRETION SYSTEM PROTEIN M; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: T2SS PROTEIN M,GENERAL SECRETION PATHWAY PROTEIN M; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TYPE II SECRETION SYSTEM PROTEIN M; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: T2SS PROTEIN M,GENERAL SECRETION PATHWAY PROTEIN M; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TYPE II SECRETION SYSTEM PROTEIN L; COMPND 13 CHAIN: E; COMPND 14 SYNONYM: T2SS PROTEIN L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 3 ORGANISM_TAXID: 571; SOURCE 4 GENE: DVB85_16620; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 9 ORGANISM_TAXID: 571; SOURCE 10 GENE: DVB85_16620; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: KLEBSIELLA OXYTOCA; SOURCE 15 ORGANISM_TAXID: 571; SOURCE 16 GENE: GSPL, DVB85_16625; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE II SECRETION SYSTEM, ASSEMBLY PLATFORM, KLEBSIELLA OXYTOCA, KEYWDS 2 FERREDOXIN-LIKE DOMAIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.DAZZONI,Y.LI,A.LOPEZ-CASTILLA,S.BRIER,A.MECHALY,F.CORDIER,A.HAOUZ, AUTHOR 2 M.NILGES,O.FRANCETIC,B.BARDIAUX,N.IZADI-PRUNEYRE REVDAT 3 01-MAY-24 8AB1 1 REMARK REVDAT 2 15-FEB-23 8AB1 1 JRNL REVDAT 1 11-JAN-23 8AB1 0 JRNL AUTH R.DAZZONI,Y.LI,A.LOPEZ-CASTILLA,S.BRIER,A.MECHALY,F.CORDIER, JRNL AUTH 2 A.HAOUZ,M.NILGES,O.FRANCETIC,B.BARDIAUX,N.IZADI-PRUNEYRE JRNL TITL STRUCTURE AND DYNAMIC ASSOCIATION OF AN ASSEMBLY PLATFORM JRNL TITL 2 SUBCOMPLEX OF THE BACTERIAL TYPE II SECRETION SYSTEM. JRNL REF STRUCTURE V. 31 152 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 36586404 JRNL DOI 10.1016/J.STR.2022.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.827 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.332 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.359 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2357 ; 0.009 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 2362 ; 0.002 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3208 ; 1.426 ; 1.876 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5377 ; 1.148 ; 2.695 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 7.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;32.539 ;20.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;18.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2670 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1228 ; 0.985 ; 5.833 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1227 ; 0.985 ; 5.834 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 1.708 ; 8.747 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1529 ; 1.708 ; 8.747 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 0.861 ; 5.956 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1128 ; 0.861 ; 5.956 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1680 ; 1.469 ; 8.872 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2552 ; 4.906 ;70.314 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2550 ; 4.861 ;70.224 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1150 -52.8000 -21.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.1860 REMARK 3 T33: 0.2124 T12: -0.0284 REMARK 3 T13: 0.0662 T23: -0.1161 REMARK 3 L TENSOR REMARK 3 L11: 10.0268 L22: 9.9011 REMARK 3 L33: 7.7729 L12: -3.4103 REMARK 3 L13: 0.4048 L23: 2.7427 REMARK 3 S TENSOR REMARK 3 S11: -0.1555 S12: -1.0186 S13: 0.4207 REMARK 3 S21: 0.8379 S22: -0.0608 S23: 0.4402 REMARK 3 S31: 0.1653 S32: -0.2991 S33: 0.2163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 79 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8980 -26.9120 -3.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.7202 T22: 1.3474 REMARK 3 T33: 1.6209 T12: 0.5087 REMARK 3 T13: 0.7914 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 9.6769 L22: 13.9682 REMARK 3 L33: 8.8731 L12: -7.0437 REMARK 3 L13: 5.6673 L23: 0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.7901 S12: -0.5818 S13: -0.7442 REMARK 3 S21: 0.9267 S22: 0.1177 S23: 2.3821 REMARK 3 S31: -0.6591 S32: -2.0715 S33: 0.6723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 79 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0800 -49.1570 -15.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.1039 REMARK 3 T33: 0.1548 T12: -0.0082 REMARK 3 T13: 0.0928 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 8.0121 L22: 8.8443 REMARK 3 L33: 4.9128 L12: -1.1089 REMARK 3 L13: -3.6284 L23: 1.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.4185 S12: -0.4145 S13: -0.7201 REMARK 3 S21: 0.5469 S22: 0.1993 S23: 0.5258 REMARK 3 S31: 0.5589 S32: -0.0775 S33: 0.2191 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 7 E 86 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9130 -38.5500 -12.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.2418 T22: 0.7013 REMARK 3 T33: 0.9952 T12: 0.0771 REMARK 3 T13: 0.2814 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 11.0044 L22: 9.7544 REMARK 3 L33: 10.3662 L12: -3.3091 REMARK 3 L13: -1.2175 L23: 0.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.1758 S12: 0.1906 S13: -0.4439 REMARK 3 S21: 0.3635 S22: -0.0225 S23: 2.1862 REMARK 3 S31: 0.0706 S32: -1.7623 S33: 0.1983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.50 REMARK 3 ION PROBE RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 8AB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : AUTOPROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 102.104 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.80 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 41.10 REMARK 200 R MERGE FOR SHELL (I) : 1.98200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NMR MODELS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0%W/V PEG 3350, 0.2M KCL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.00100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.00100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.00100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.00100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 55.00100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.00100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 79 C ARG C 79 O 0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER E 49 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 25 44.31 -145.33 REMARK 500 SER B 27 -2.17 58.54 REMARK 500 GLN B 65 72.00 -117.32 REMARK 500 LEU C 17 173.43 95.76 REMARK 500 GLN C 25 38.97 -144.41 REMARK 500 SER C 27 -2.49 57.54 REMARK 500 ALA C 51 7.39 87.28 REMARK 500 MET C 53 90.62 61.95 REMARK 500 VAL C 63 126.34 -38.33 REMARK 500 PRO C 67 63.08 -69.65 REMARK 500 SER D 27 0.87 -58.00 REMARK 500 LEU E 9 -72.65 -74.77 REMARK 500 PRO E 24 105.63 -54.23 REMARK 500 ASN E 38 77.05 18.42 REMARK 500 SER E 48 -133.88 -156.44 REMARK 500 SER E 49 -10.95 -140.47 REMARK 500 GLN E 50 31.16 -159.81 REMARK 500 SER E 56 -51.39 -153.22 REMARK 500 VAL E 65 40.46 -149.42 REMARK 500 GLN E 66 -51.11 -163.89 REMARK 500 THR E 67 79.67 146.09 REMARK 500 GLU E 69 11.23 -149.39 REMARK 500 LYS E 71 -105.88 -104.08 REMARK 500 ILE E 77 56.89 21.97 REMARK 500 GLU E 78 51.58 -115.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU C 17 THR C 18 -143.26 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8AB1 B 3 79 UNP A0A8B2TA77_KLEOX DBREF2 8AB1 B A0A8B2TA77 81 157 DBREF1 8AB1 C 6 79 UNP A0A8B2TA77_KLEOX DBREF2 8AB1 C A0A8B2TA77 84 157 DBREF1 8AB1 D 3 79 UNP A0A8B2TA77_KLEOX DBREF2 8AB1 D A0A8B2TA77 81 157 DBREF1 8AB1 E 7 86 UNP A0A8B2T914_KLEOX DBREF2 8AB1 E A0A8B2T914 317 396 SEQADV 8AB1 ALA E 86 UNP A0A8B2T91 ASN 396 CONFLICT SEQRES 1 B 77 GLU PRO SER THR VAL ILE MET ARG GLU ALA ALA ARG HIS SEQRES 2 B 77 GLY LEU THR ILE VAL ARG LEU GLN PRO GLN GLY SER ARG SEQRES 3 B 77 LEU SER LEU THR VAL GLN PRO ALA ASP PHE GLN ALA LEU SEQRES 4 B 77 MET ALA TRP LEU ASP ALA LEU GLY GLN ALA GLY MET THR SEQRES 5 B 77 THR ALA THR LEU ALA VAL THR ALA VAL ALA GLN GLN PRO SEQRES 6 B 77 GLY TRP VAL THR VAL ASN THR LEU VAL LEU GLU ARG SEQRES 1 C 74 THR VAL ILE MET ARG GLU ALA ALA ARG HIS GLY LEU THR SEQRES 2 C 74 ILE VAL ARG LEU GLN PRO GLN GLY SER ARG LEU SER LEU SEQRES 3 C 74 THR VAL GLN PRO ALA ASP PHE GLN ALA LEU MET ALA TRP SEQRES 4 C 74 LEU ASP ALA LEU GLY GLN ALA GLY MET THR THR ALA THR SEQRES 5 C 74 LEU ALA VAL THR ALA VAL ALA GLN GLN PRO GLY TRP VAL SEQRES 6 C 74 THR VAL ASN THR LEU VAL LEU GLU ARG SEQRES 1 D 77 GLU PRO SER THR VAL ILE MET ARG GLU ALA ALA ARG HIS SEQRES 2 D 77 GLY LEU THR ILE VAL ARG LEU GLN PRO GLN GLY SER ARG SEQRES 3 D 77 LEU SER LEU THR VAL GLN PRO ALA ASP PHE GLN ALA LEU SEQRES 4 D 77 MET ALA TRP LEU ASP ALA LEU GLY GLN ALA GLY MET THR SEQRES 5 D 77 THR ALA THR LEU ALA VAL THR ALA VAL ALA GLN GLN PRO SEQRES 6 D 77 GLY TRP VAL THR VAL ASN THR LEU VAL LEU GLU ARG SEQRES 1 E 80 PRO ALA LEU ILE SER ARG LEU GLY ALA LEU GLN GLN ILE SEQRES 2 E 80 ILE ASP ASP THR PRO GLY ILE ARG LEU ARG THR LEU SER SEQRES 3 E 80 PHE ASP ALA ALA ARG ASN ALA LEU GLN LEU GLU ILE SER SEQRES 4 E 80 ALA VAL SER SER GLN ALA LEU GLU GLN PHE SER GLN ARG SEQRES 5 E 80 ALA ARG ALA ARG PHE ARG VAL GLN THR GLY GLU MET LYS SEQRES 6 E 80 PRO ARG ALA ASP GLY ILE GLU GLY ARG LEU THR LEU GLU SEQRES 7 E 80 GLY ALA FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 GLU B 3 HIS B 15 1 13 HELIX 2 AA2 PHE B 38 ALA B 51 1 14 HELIX 3 AA3 VAL C 7 HIS C 15 1 9 HELIX 4 AA4 PHE C 38 GLN C 50 1 13 HELIX 5 AA5 PRO D 4 HIS D 15 1 12 HELIX 6 AA6 PHE D 38 ALA D 51 1 14 HELIX 7 AA7 LEU E 9 LEU E 13 5 5 HELIX 8 AA8 GLY E 14 THR E 23 1 10 HELIX 9 AA9 GLN E 50 PHE E 55 1 6 HELIX 10 AB1 ARG E 58 PHE E 63 1 6 SHEET 1 AA1 4 ILE B 19 PRO B 24 0 SHEET 2 AA1 4 ARG B 28 VAL B 33 -1 O THR B 32 N VAL B 20 SHEET 3 AA1 4 TRP B 69 GLU B 78 -1 O LEU B 75 N LEU B 31 SHEET 4 AA1 4 ALA B 36 ASP B 37 -1 N ALA B 36 O VAL B 70 SHEET 1 AA2 4 ILE B 19 PRO B 24 0 SHEET 2 AA2 4 ARG B 28 VAL B 33 -1 O THR B 32 N VAL B 20 SHEET 3 AA2 4 TRP B 69 GLU B 78 -1 O LEU B 75 N LEU B 31 SHEET 4 AA2 4 THR B 54 ALA B 62 -1 N THR B 61 O THR B 71 SHEET 1 AA312 ILE C 19 PRO C 24 0 SHEET 2 AA312 ARG C 28 VAL C 33 -1 O SER C 30 N GLN C 23 SHEET 3 AA312 TRP C 69 GLU C 78 -1 O LEU C 75 N LEU C 31 SHEET 4 AA312 THR C 54 THR C 61 -1 N THR C 61 O THR C 71 SHEET 5 AA312 MET E 70 ASP E 75 -1 O ASP E 75 N LEU C 58 SHEET 6 AA312 LEU E 81 GLY E 85 -1 O THR E 82 N ALA E 74 SHEET 7 AA312 ALA E 39 ALA E 46 -1 N LEU E 40 O GLY E 85 SHEET 8 AA312 ILE E 26 ASP E 34 -1 N ARG E 27 O SER E 45 SHEET 9 AA312 THR D 54 ALA D 62 -1 N ALA D 62 O ARG E 29 SHEET 10 AA312 TRP D 69 GLU D 78 -1 O THR D 71 N THR D 61 SHEET 11 AA312 ARG D 28 VAL D 33 -1 N LEU D 31 O LEU D 75 SHEET 12 AA312 ILE D 19 PRO D 24 -1 N VAL D 20 O THR D 32 SHEET 1 AA410 ALA C 36 ASP C 37 0 SHEET 2 AA410 TRP C 69 GLU C 78 -1 O VAL C 70 N ALA C 36 SHEET 3 AA410 THR C 54 THR C 61 -1 N THR C 61 O THR C 71 SHEET 4 AA410 MET E 70 ASP E 75 -1 O ASP E 75 N LEU C 58 SHEET 5 AA410 LEU E 81 GLY E 85 -1 O THR E 82 N ALA E 74 SHEET 6 AA410 ALA E 39 ALA E 46 -1 N LEU E 40 O GLY E 85 SHEET 7 AA410 ILE E 26 ASP E 34 -1 N ARG E 27 O SER E 45 SHEET 8 AA410 THR D 54 ALA D 62 -1 N ALA D 62 O ARG E 29 SHEET 9 AA410 TRP D 69 GLU D 78 -1 O THR D 71 N THR D 61 SHEET 10 AA410 ALA D 36 ASP D 37 -1 N ALA D 36 O VAL D 70 CISPEP 1 ALA B 64 GLN B 65 0 2.88 CRYST1 117.899 117.899 110.002 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008482 0.004897 0.000000 0.00000 SCALE2 0.000000 0.009794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009091 0.00000